FvH4_6g42220

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
32989915 .. 32994404
4490 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42220.t10

Sequence Viewer

Length: 1185 bp
ATGGGAATCGAAAGGAAAACAAGAACGATGGAGATGATGGGAACAAGAGAGAAGAAGAAGGTTGAGTGGGACAGACCGATCTACCTACAGGTCAGGGCCGAAGACAAGTCGTGCTTATGGTTCGTAATTGAGGACGGACGGCGGCCAAGGGAACAAGGATCTGAAGAGAATGACGACGACGATGATAAGGTAATCTTCCATGGACTAGATCTTCCCCAGCTTGATTACCTTCCCCTTCCTAACAGCCTTGTGGTGTTGAACTCCCGATTATACATGATTGGTGGACGTAAATATACTGGTAGACGTGGTTCAGTGCAATACTCTTTTGGGTATGATCACGTGGACTTATCGGAACAAGCAAGCAAGCAACAATGGCGTTTCGAAAAAGATGAATGGACTTTATATTCGACCGGCTCGGTGGCCTGCTCCGATGACGGTCTCGTCTATACCTTGGCACCTCGACGCTGCTACCGTTTCCGTTTCGATCCTCGCAGCGGCGGTGACGTCCGTTCAGAGTTCCCTTCCGAATTCCCAATCGAATTAGGAGTTGCACCGCATCTTGTCAGTATTTCTAACAAGTATATTTACGCCTATAGCAAAGGCGCCAGATCTAATACCTTGGTTCGGTTTGATTTGGAGAAAAAGGAGTGGGAGTGCCTCTATAGGAATTTCTGGGGTCGCTTGGCTCCCGGAGTGGTGCTCTACGGTGACTCCTACTTAGTATGCTTTGGGACCAAGAAACCAACATGCAGTTCCTTGTTCTCCCAGCAGCCTGGTTTGTACATGTTTGATATTCGCCAGAGTCAGTGGCTCGATCAACCTGTCAAGGGCCTTGATGATGCTCTTCCGGTTATCCCAGAAGGGTTTGAGGAGGACCGCGTTTACAACTACTTTTTACCGCTCTTGTTCCAAATTGGAACCCAAAGGTTTGCTTTGGTTTGGGGCGATTATTTGGAAAATGTCGGTTGCGAGATTCATTGCCACAAATTCACATTCGACTACACTCCCAGCGGCGGCAGCGATGGCACTACCGAAAAGAATCATCCACCAACCTCATTTGTTGCTCGGAGGCTCTCAAATGGAGTCCTTATTCAGCAAGACGGCACATTACTTGGTTGCACTGTAGGAATTGAATCTTCTGCACAAGAGAAAGGAAAAATACATGGATCATCTACACTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

45.1

Weight (kDa)

5.77

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 440
AatII GACGTC 1 cut(s) 507
AccB1I GGYRCC 2 cut(s) 454, 602
AccBSI CCGCTC 1 cut(s) 901
AccI GTMKAC 1 cut(s) 301
AccII CGCG 1 cut(s) 879
AciI CCGC 8 cut(s) 142, 495, 498, 554, 877, 899, 1011, 1014
AclWI GGATC 3 cut(s) 166, 479, 1174
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 3 cut(s) 527, 667, 986
AcuI CTGAAG 1 cut(s) 183
AcvI CACGTG 1 cut(s) 340
AcyI GRCGYC 2 cut(s) 504, 603
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 4 cut(s) 494, 624, 827, 1013
AflIII ACRYGT 1 cut(s) 783
AgsI TTSAA 2 cut(s) 259, 1133
AjiI CACGTC 1 cut(s) 305
AjnI CCWGG 1 cut(s) 772
AjuI GAANNNNNNNTTGG 2 cut(s) 736, 768
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 443
AlwI GGATC 3 cut(s) 166, 479, 1174
AoxI GGCC 4 cut(s) 96, 143, 420, 829
ApeKI GCWGC 4 cut(s) 465, 492, 769, 1017
ApoI RAATTY 3 cut(s) 527, 667, 986
ArsI GACNNNNNNTTYG 2 cut(s) 388, 420
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 4 cut(s) 96, 732, 829, 874
AsuC2I CCSGG 1 cut(s) 690
AsuHPI GGTGA 2 cut(s) 512, 719
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 2 cut(s) 732, 874
BanI GGYRCC 2 cut(s) 454, 602
BbrPI CACGTG 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 4 cut(s) 452, 504, 781, 1029
BccI CCATC 3 cut(s) 22, 31, 1016
BceAI ACGGC 2 cut(s) 155, 1117
BciT130I CCWGG 1 cut(s) 774
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 1 cut(s) 443
BfaI CTAG 1 cut(s) 206
BfmI CTRYAG 4 cut(s) 86, 592, 661, 1122
BfoI RGCGCY 1 cut(s) 606
BglII AGATCT 2 cut(s) 208, 608
BisI GCNGC 8 cut(s) 143, 466, 493, 496, 770, 1012, 1015, 1018
BlsI GCNGC 8 cut(s) 144, 467, 494, 497, 771, 1013, 1016, 1019
Bme1390I CCNGG 2 cut(s) 690, 774
Bme18I GGWCC 2 cut(s) 732, 874
BmgBI CACGTC 1 cut(s) 305
BmgT120I GGNCC 4 cut(s) 96, 732, 829, 874
BmiI GGNNCC 5 cut(s) 456, 604, 687, 733, 919
BmrFI CCNGG 2 cut(s) 690, 774
BmsI GCATC 2 cut(s) 565, 829
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 684, 716
Bpu14I TTCGAA 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 690
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 2 cut(s) 504, 603
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 4 cut(s) 146, 199, 450, 618
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 4 cut(s) 638, 668, 695, 725
Bsc4I CCNNNNNNNGG 4 cut(s) 494, 624, 827, 1013
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 976
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 4 cut(s) 146, 199, 450, 618
BseGI GGATG 1 cut(s) 1042
BseLI CCNNNNNNNGG 4 cut(s) 494, 624, 827, 1013
BseMI GCAATG 1 cut(s) 976
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 884
BseXI GCAGC 4 cut(s) 452, 504, 781, 1029
BseYI CCCAGC 3 cut(s) 216, 765, 1007
BsgI GTGCAG 1 cut(s) 1125
Bsh1236I CGCG 1 cut(s) 879
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 4 cut(s) 98, 145, 422, 831
BshNI GGYRCC 2 cut(s) 454, 602
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 3 cut(s) 411, 690, 848
BslFI GGGAC 2 cut(s) 83, 745
BslI CCNNNNNNNGG 4 cut(s) 494, 624, 827, 1013
BsmAI GTCTC 1 cut(s) 443
BsmFI GGGAC 2 cut(s) 83, 745
BsnI GGCC 4 cut(s) 98, 145, 422, 831
Bso31I GGTCTC 1 cut(s) 443
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 702
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 8 cut(s) 142, 495, 498, 554, 877, 899, 1011, 1014
BspANI GGCC 4 cut(s) 98, 145, 422, 831
BspFNI CGCG 1 cut(s) 879
BspLI GGNNCC 5 cut(s) 456, 604, 687, 733, 919
BspPI GGATC 3 cut(s) 166, 479, 1174
BspQI GCTCTTC 1 cut(s) 849
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 2 cut(s) 454, 602
BspTNI GGTCTC 1 cut(s) 443
BsrBI CCGCTC 1 cut(s) 901
BsrDI GCAATG 1 cut(s) 976
BsrFI RCCGGY 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 4 cut(s) 146, 199, 450, 618
BssMI GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
BssNI GRCGYC 2 cut(s) 504, 603
BssT1I CCWWGG 4 cut(s) 146, 199, 450, 618
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 4 cut(s) 437, 473, 707, 1123
Bst6I CTCTTC 2 cut(s) 159, 849
BstACI GRCGYC 2 cut(s) 504, 603
BstAUI TGTACA 1 cut(s) 780
BstBAI YACGTR 1 cut(s) 340
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 361, 365, 424
BstDEI CTNAG 1 cut(s) 718
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 1042
BstFNI CGCG 1 cut(s) 879
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 8 cut(s) 81, 161, 211, 337, 487, 611, 817, 1169
BstMAI GTCTC 1 cut(s) 443
BstMBI GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 3 cut(s) 373, 1017, 1023
BstNI CCWGG 1 cut(s) 774
BstNSI RCATGY 2 cut(s) 750, 787
BstSCI CCNGG 2 cut(s) 688, 772
BstSFI CTRYAG 4 cut(s) 86, 592, 661, 1122
BstUI CGCG 1 cut(s) 879
BstV1I GCAGC 4 cut(s) 452, 504, 781, 1029
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 3 cut(s) 158, 208, 608
BstXI CCANNNNNNTGG 1 cut(s) 773
BstYI RGATCY 3 cut(s) 158, 208, 608
BsuRI GGCC 4 cut(s) 98, 145, 422, 831
BtgI CCRYGG 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 1035
BtrI CACGTC 1 cut(s) 305
BtsCI GGATG 1 cut(s) 1042
BtsIMutI CAGTG 3 cut(s) 318, 812, 1119
Cac8I GCNNGC 3 cut(s) 361, 365, 424
CfoI GCGC 1 cut(s) 605
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 4 cut(s) 96, 732, 829, 874
CseI GACGC 1 cut(s) 471
Csp6I GTAC 1 cut(s) 781
CviAII CATG 5 cut(s) 200, 274, 747, 784, 1163
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 1 cut(s) 718
DinI GGCGCC 1 cut(s) 604
DpnI GATC 8 cut(s) 80, 160, 210, 336, 486, 610, 816, 1168
DpnII GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
DrdI GACNNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 159, 849
EarI CTCTTC 2 cut(s) 159, 849
Eco130I CCWWGG 4 cut(s) 146, 199, 450, 618
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 2 cut(s) 732, 874
Eco57I CTGAAG 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 829
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 772
EcoT14I CCWWGG 4 cut(s) 146, 199, 450, 618
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
ErhI CCWWGG 4 cut(s) 146, 199, 450, 618
FaeI CATG 5 cut(s) 203, 277, 750, 787, 1166
FalI AAGNNNNNCTT 6 cut(s) 98, 130, 179, 211, 916, 948
FaqI GGGAC 2 cut(s) 83, 745
FatI CATG 5 cut(s) 199, 273, 746, 783, 1162
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 8 cut(s) 143, 466, 493, 496, 770, 1012, 1015, 1018
FokI GGATG 1 cut(s) 1029
Fsp4HI GCNGC 8 cut(s) 143, 466, 493, 496, 770, 1012, 1015, 1018
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 604
GluI GCNGC 8 cut(s) 143, 466, 493, 496, 770, 1012, 1015, 1018
GsaI CCCAGC 3 cut(s) 220, 769, 1011
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 4 cut(s) 98, 145, 422, 831
HapII CCGG 3 cut(s) 411, 690, 848
HgaI GACGC 1 cut(s) 471
HhaI GCGC 1 cut(s) 605
Hin1I GRCGYC 2 cut(s) 504, 603
Hin1II CATG 5 cut(s) 203, 277, 750, 787, 1166
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HinfI GANTC 7 cut(s) 6, 710, 802, 973, 1039, 1083, 1133
HpaII CCGG 3 cut(s) 411, 690, 848
HphI GGTGA 2 cut(s) 512, 719
Hpy166II GTNNAC 4 cut(s) 284, 302, 343, 883
Hpy188I TCNGA 6 cut(s) 163, 352, 430, 514, 526, 1068
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 4 cut(s) 284, 302, 343, 883
Hpy99I CGWCG 3 cut(s) 179, 182, 465
HpyAV CCTTC 5 cut(s) 52, 239, 245, 531, 854
HpyCH4III ACNGT 4 cut(s) 437, 473, 707, 1123
HpyCH4IV ACGT 4 cut(s) 286, 304, 339, 504
HpyCH4V TGCA 5 cut(s) 316, 551, 750, 1119, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 373, 1017, 1023
HpyF3I CTNAG 1 cut(s) 718
HpySE526I ACGT 4 cut(s) 286, 304, 339, 504
Hsp92I GRCGYC 2 cut(s) 504, 603
Hsp92II CATG 5 cut(s) 203, 277, 750, 787, 1166
HspAI GCGC 1 cut(s) 603
KasI GGCGCC 1 cut(s) 602
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 2 cut(s) 431, 691
Lsp1109I GCAGC 4 cut(s) 452, 504, 781, 1029
LweI GCATC 2 cut(s) 565, 829
MaeI CTAG 1 cut(s) 206
MaeII ACGT 4 cut(s) 286, 304, 339, 504
MaeIII GTNAC 2 cut(s) 500, 707
MalI GATC 8 cut(s) 80, 160, 210, 336, 486, 610, 816, 1168
MbiI CCGCTC 1 cut(s) 901
MboI GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
MboII GAAGA 8 cut(s) 64, 67, 113, 176, 187, 203, 836, 1128
MflI RGATCY 3 cut(s) 158, 208, 608
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 7 cut(s) 126, 527, 539, 667, 912, 986, 1128
Mly113I GGCGCC 1 cut(s) 603
MlyI GAGTC 3 cut(s) 704, 811, 1092
MnlI CCTC 8 cut(s) 124, 468, 498, 668, 862, 865, 1062, 1063
MspA1I CMGCKG 2 cut(s) 495, 1011
MspI CCGG 3 cut(s) 411, 690, 848
MspR9I CCNGG 2 cut(s) 690, 774
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 1 cut(s) 879
MwoI GCNNNNNNNGC 3 cut(s) 373, 1017, 1023
NarI GGCGCC 1 cut(s) 603
NciI CCSGG 1 cut(s) 690
NcoI CCATGG 1 cut(s) 199
NdeII GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
NlaIII CATG 5 cut(s) 203, 277, 750, 787, 1166
NlaIV GGNNCC 5 cut(s) 456, 604, 687, 733, 919
NmuCI GTSAC 2 cut(s) 500, 707
NspI RCATGY 2 cut(s) 750, 787
NspV TTCGAA 1 cut(s) 381
PciI ACATGT 1 cut(s) 783
PciSI GCTCTTC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 469
PfeI GAWTC 4 cut(s) 6, 973, 1039, 1133
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 8 cut(s) 144, 467, 494, 497, 771, 1013, 1016, 1019
PleI GAGTC 3 cut(s) 704, 810, 1091
PluTI GGCGCC 1 cut(s) 606
PmaCI CACGTG 1 cut(s) 340
PmlI CACGTG 1 cut(s) 340
PpsI GAGTC 3 cut(s) 704, 810, 1091
Ppu21I YACGTR 1 cut(s) 340
PscI ACATGT 1 cut(s) 783
Psp6I CCWGG 1 cut(s) 772
PspCI CACGTG 1 cut(s) 340
PspFI CCCAGC 3 cut(s) 216, 765, 1007
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 5 cut(s) 456, 604, 687, 733, 919
PspPI GGNCC 4 cut(s) 96, 732, 829, 874
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
PsuI RGATCY 3 cut(s) 158, 208, 608
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
SapI GCTCTTC 1 cut(s) 849
SatI GCNGC 8 cut(s) 143, 466, 493, 496, 770, 1012, 1015, 1018
Sau3AI GATC 8 cut(s) 78, 158, 208, 334, 484, 608, 814, 1166
Sau96I GGNCC 4 cut(s) 96, 732, 829, 874
SchI GAGTC 3 cut(s) 704, 811, 1092
ScrFI CCNGG 2 cut(s) 690, 774
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 2 cut(s) 565, 829
SfcI CTRYAG 4 cut(s) 86, 592, 661, 1122
SfoI GGCGCC 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 2 cut(s) 732, 874
Sse9I AATT 7 cut(s) 126, 527, 539, 667, 912, 986, 1128
SsiI CCGC 8 cut(s) 142, 495, 498, 554, 877, 899, 1011, 1014
SspDI GGCGCC 1 cut(s) 602
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 688, 772
StyI CCWWGG 4 cut(s) 146, 199, 450, 618
TaaI ACNGT 4 cut(s) 437, 473, 707, 1123
TaiI ACGT 4 cut(s) 289, 307, 342, 507
TaqI TCGA 8 cut(s) 9, 381, 407, 460, 483, 537, 813, 996
TaqII GACCGA 1 cut(s) 91
TasI AATT 7 cut(s) 126, 527, 539, 667, 912, 986, 1128
TatI WGTACW 1 cut(s) 780
TauI GCSGC 4 cut(s) 145, 498, 1014, 1017
TfiI GAWTC 4 cut(s) 6, 973, 1039, 1133
TscAI CASTG 3 cut(s) 318, 812, 1126
TseFI GTSAC 2 cut(s) 500, 707
TseI GCWGC 4 cut(s) 465, 492, 769, 1017
Tsp45I GTSAC 2 cut(s) 500, 707
TspDTI ATGAA 2 cut(s) 405, 965
TspGWI ACGGA 3 cut(s) 150, 467, 497
TspRI CASTG 3 cut(s) 318, 812, 1126
VpaK11BI GGWCC 2 cut(s) 732, 874
XapI RAATTY 3 cut(s) 527, 667, 986
XceI RCATGY 2 cut(s) 750, 787
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 1 cut(s) 206
ZraI GACGTC 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.