Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Reverse (-)

60825239 .. 60826518

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG333100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGAAAGAAAAACAAAACAAGGGACAAGAAGAAGAAGGTTGCGCGGGACAGGCCCATCTACCTGTACCTAGAGGTCAAGGCAGACGACAACTCGGTGTCGTGTTTATGGTTCGTCATTGAAGACGGACGGCGGCCGAGGCAAATCAATGGATCTGACGAGATTGATGACGATGATAAGGTAATCTTCCGTCGCCTAGATCTTCCCGAATTTGATGATTATTACCTGCGCCTTCCTCGCAGCGTTGTGGTCTTGGACTCCCGATTATTCATGATTGGTGGATCTCAATGTAGAAAGCGAGATTGCTCTGGTGTGGAACCCTACATTGGGTATGATTACTTGGACCTGAAACCCTCCTATGTAGCCAAGGAATGGCGTTCTGAACAAGGGGTTTCATTCCCTTCGCAACAGTCGGTGGCCTGCTACAAAGACGGTCTCATCTACACCTTGGGACATGGAGGATGTCACCGTCTCGATCCTCGCACTGGTGTCCGTTCGGAGTTTCCCGCCACATGCGGGTTTCGAGTACAGCTTGGAATGTCGAACAAGTATATTTACACCTATTCCCTTGGTATTTATAATCACCTGTCTCGTTATGATTTGGAGAAAAACGAGTTTGACTGCATCTCTAGCAGTTTCTGGGGTCTCTGGGGCCCCGGAGTGGTAATTTCCGGTGACTCCTACTTATTATGCTTTGGCACTATGAAACCCACCGAAAGATTCTCCGGGCCGCCTGGTGTTTACGTTTTTGATATTCGCCAGCGTCAGTGGCTAGATGAACCAGTTAAGGGCCTTGATGATGCTCTCCCCGTTATCCCAGACACGTACGAGCCCTTGGAAAGGCACCTTTACCTCTGTGATTTACCGCGCGTGTTCCAAATCGGAACCAAAAGATTTGCTCTGGTTTGGGAGGAACTTTCTGTGAAAGATGATGATTGTCGGCTTCATTGCCACAAGTTCACTATCGACCACATCCCCTGCAGCAGTAGCTCTCATCAAACCAACAATCAACCCACCTCCTTTGTTGCTCGAATAGTCTCTAATGGAGTCCTTACTCTGAAAGACGCCGGATTACTTGGTTGCACTGTAGGAATTGAATCTTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

42.19

Weight (kDa)

6.46

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	843
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccII	CGCG	3 cut(s)	46, 868, 870
AciI	CCGC	6 cut(s)	46, 133, 507, 516, 731, 866
AclWI	GGATC	3 cut(s)	160, 289, 470
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	209
AcyI	GRCGYC	1 cut(s)	1065
AfaI	GTAC	3 cut(s)	68, 528, 827
AfiI	CCNNNNNNNGG	8 cut(s)	326, 327, 372, 485, 516, 661, 788, 840
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	2 cut(s)	122, 1097
AjnI	CCWGG	1 cut(s)	733
AjuI	GAANNNNNNNTTGG	2 cut(s)	309, 341
AluBI	AGCT	2 cut(s)	532, 990
AluI	AGCT	2 cut(s)	532, 990
Alw26I	GTCTC	5 cut(s)	440, 476, 594, 650, 1042
AlwI	GGATC	3 cut(s)	160, 289, 470
AlwNI	CAGNNNCTG	1 cut(s)	639
AoxI	GGCC	6 cut(s)	53, 134, 417, 652, 728, 790
ApaI	GGGCCC	1 cut(s)	656
ApeKI	GCWGC	2 cut(s)	240, 981
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	46, 231, 870
AspS9I	GGNCC	6 cut(s)	54, 343, 652, 653, 728, 790
AsuC2I	CCSGG	2 cut(s)	657, 727
AsuHPI	GGTGA	3 cut(s)	458, 575, 686
AvaII	GGWCC	1 cut(s)	343
BaeGI	GKGCMC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	843
BanII	GRGCYC	2 cut(s)	656, 834
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	252, 993
BccI	CCATC	1 cut(s)	65
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	735
BcnI	CCSGG	2 cut(s)	657, 727
BcoDI	GTCTC	5 cut(s)	440, 476, 594, 650, 1042
BfaI	CTAG	4 cut(s)	71, 197, 630, 773
BfmI	CTRYAG	2 cut(s)	979, 1086
BfuAI	ACCTGC	1 cut(s)	234
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	4 cut(s)	134, 241, 731, 982
BlsI	GCNGC	4 cut(s)	135, 242, 732, 983
Bme1390I	CCNGG	3 cut(s)	657, 727, 735
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	6 cut(s)	54, 343, 652, 653, 728, 790
BmiI	GGNNCC	6 cut(s)	318, 653, 654, 655, 845, 886
BmrFI	CCNGG	3 cut(s)	657, 727, 735
BmsI	GCATC	2 cut(s)	633, 790
BpiI	GAAGAC	1 cut(s)	129
BpuMI	CCSGG	2 cut(s)	657, 727
BsaAI	YACGTR	1 cut(s)	825
BsaHI	GRCGYC	1 cut(s)	1065
BsaI	GGTCTC	2 cut(s)	440, 650
BsaJI	CCNNGG	6 cut(s)	137, 366, 447, 568, 655, 834
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	8 cut(s)	326, 327, 372, 485, 516, 661, 788, 840
Bse1I	ACTGG	2 cut(s)	490, 782
Bse3DI	GCAATG	1 cut(s)	946
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	6 cut(s)	137, 366, 447, 568, 655, 834
BseGI	GGATG	2 cut(s)	467, 972
BseLI	CCNNNNNNNGG	8 cut(s)	326, 327, 372, 485, 516, 661, 788, 840
BseMI	GCAATG	1 cut(s)	946
BseNI	ACTGG	2 cut(s)	490, 782
BseSI	GKGCMC	1 cut(s)	656
BseX3I	CGGCCG	1 cut(s)	134
BseXI	GCAGC	2 cut(s)	252, 993
Bsh1236I	CGCG	3 cut(s)	46, 868, 870
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	6 cut(s)	55, 136, 419, 654, 730, 792
BshNI	GGYRCC	1 cut(s)	843
BsiEI	CGRYCG	1 cut(s)	137
BsiSI	CCGG	4 cut(s)	657, 672, 726, 1068
BsiWI	CGTACG	1 cut(s)	825
BslFI	GGGAC	3 cut(s)	38, 62, 465
BslI	CCNNNNNNNGG	8 cut(s)	326, 327, 372, 485, 516, 661, 788, 840
BsmAI	GTCTC	5 cut(s)	440, 476, 594, 650, 1042
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	3 cut(s)	38, 62, 465
BsnI	GGCC	6 cut(s)	55, 136, 419, 654, 730, 792
Bso31I	GGTCTC	2 cut(s)	440, 650
Bsp120I	GGGCCC	1 cut(s)	652
Bsp1286I	GDGCHC	2 cut(s)	656, 834
Bsp143I	GATC	4 cut(s)	152, 199, 281, 475
BspACI	CCGC	6 cut(s)	46, 133, 507, 516, 731, 866
BspANI	GGCC	6 cut(s)	55, 136, 419, 654, 730, 792
BspFNI	CGCG	3 cut(s)	46, 868, 870
BspHI	TCATGA	2 cut(s)	270, 1106
BspLI	GGNNCC	6 cut(s)	318, 653, 654, 655, 845, 886
BspMAI	CTGCAG	1 cut(s)	983
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	3 cut(s)	160, 289, 470
BspT107I	GGYRCC	1 cut(s)	843
BspTNI	GGTCTC	2 cut(s)	440, 650
BsrDI	GCAATG	1 cut(s)	946
BsrI	ACTGG	2 cut(s)	490, 782
BssECI	CCNNGG	6 cut(s)	137, 366, 447, 568, 655, 834
BssMI	GATC	4 cut(s)	152, 199, 281, 475
BssNI	GRCGYC	1 cut(s)	1065
BssT1I	CCWWGG	4 cut(s)	366, 447, 568, 834
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	4 cut(s)	411, 434, 470, 1087
BstACI	GRCGYC	1 cut(s)	1065
BstBAI	YACGTR	1 cut(s)	825
BstC8I	GCNNGC	2 cut(s)	421, 761
BstENI	CCTNNNNNAGG	1 cut(s)	838
BstF5I	GGATG	2 cut(s)	467, 972
BstFNI	CGCG	3 cut(s)	46, 868, 870
BstHHI	GCGC	3 cut(s)	46, 231, 870
BstKTI	GATC	4 cut(s)	155, 202, 284, 478
BstMAI	GTCTC	5 cut(s)	440, 476, 594, 650, 1042
BstMBI	GATC	4 cut(s)	152, 199, 281, 475
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 139, 237, 630, 769, 987
BstNI	CCWGG	1 cut(s)	735
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	3 cut(s)	655, 725, 733
BstSFI	CTRYAG	2 cut(s)	979, 1086
BstSLI	GKGCMC	1 cut(s)	656
BstUI	CGCG	3 cut(s)	46, 868, 870
BstV1I	GCAGC	2 cut(s)	252, 993
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	3 cut(s)	152, 199, 281
BstYI	RGATCY	3 cut(s)	152, 199, 281
BstZI	CGGCCG	1 cut(s)	134
BsuRI	GGCC	6 cut(s)	55, 136, 419, 654, 730, 792
BtsCI	GGATG	2 cut(s)	467, 972
BtsIMutI	CAGTG	3 cut(s)	483, 773, 1083
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	421, 761
CaiI	CAGNNNCTG	1 cut(s)	639
CciI	TCATGA	2 cut(s)	270, 1106
CfoI	GCGC	3 cut(s)	46, 231, 870
Cfr13I	GGNCC	6 cut(s)	54, 343, 652, 653, 728, 790
CseI	GACGC	2 cut(s)	752, 1073
Csp6I	GTAC	3 cut(s)	67, 527, 826
CspCI	CAANNNNNGTGG	2 cut(s)	1003, 1038
CviAII	CATG	4 cut(s)	271, 455, 513, 1107
CviQI	GTAC	3 cut(s)	67, 527, 826
DpnI	GATC	4 cut(s)	154, 201, 283, 477
DpnII	GATC	4 cut(s)	152, 199, 281, 475
EaeI	YGGCCR	1 cut(s)	134
EagI	CGGCCG	1 cut(s)	134
EclXI	CGGCCG	1 cut(s)	134
Eco130I	CCWWGG	4 cut(s)	366, 447, 568, 834
Eco24I	GRGCYC	2 cut(s)	656, 834
Eco31I	GGTCTC	2 cut(s)	440, 650
Eco47I	GGWCC	1 cut(s)	343
Eco52I	CGGCCG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	838
EcoO109I	RGGNCCY	3 cut(s)	652, 653, 790
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	4 cut(s)	366, 447, 568, 834
EcoT38I	GRGCYC	2 cut(s)	656, 834
ErhI	CCWWGG	4 cut(s)	366, 447, 568, 834
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	4 cut(s)	274, 458, 516, 1110
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	3 cut(s)	38, 62, 465
FatI	CATG	4 cut(s)	270, 454, 512, 1106
FauI	CCCGC	3 cut(s)	39, 509, 514
Fnu4HI	GCNGC	4 cut(s)	134, 241, 731, 982
FokI	GGATG	2 cut(s)	474, 959
FriOI	GRGCYC	2 cut(s)	656, 834
Fsp4HI	GCNGC	4 cut(s)	134, 241, 731, 982
FspBI	CTAG	4 cut(s)	71, 197, 630, 773
GlaI	GCGC	3 cut(s)	45, 230, 869
GluI	GCNGC	4 cut(s)	134, 241, 731, 982
HaeIII	GGCC	6 cut(s)	55, 136, 419, 654, 730, 792
HapII	CCGG	4 cut(s)	657, 672, 726, 1068
HgaI	GACGC	2 cut(s)	752, 1073
HhaI	GCGC	3 cut(s)	46, 231, 870
Hin1I	GRCGYC	1 cut(s)	1065
Hin1II	CATG	4 cut(s)	274, 458, 516, 1110
Hin6I	GCGC	3 cut(s)	44, 229, 868
HinP1I	GCGC	3 cut(s)	44, 229, 868
HinfI	GANTC	5 cut(s)	257, 677, 720, 1047, 1097
HpaII	CCGG	4 cut(s)	657, 672, 726, 1068
HphI	GGTGA	3 cut(s)	458, 575, 686
Hpy166II	GTNNAC	2 cut(s)	742, 960
Hpy188I	TCNGA	5 cut(s)	157, 382, 499, 884, 1059
Hpy188III	TCNNGA	5 cut(s)	206, 261, 271, 473, 1107
Hpy8I	GTNNAC	2 cut(s)	742, 960
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	31, 242, 411
HpyCH4III	ACNGT	4 cut(s)	411, 434, 470, 1087
HpyCH4IV	ACGT	2 cut(s)	744, 824
HpyCH4V	TGCA	3 cut(s)	624, 981, 1083
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 139, 237, 630, 769, 987
HpySE526I	ACGT	2 cut(s)	744, 824
Hsp92I	GRCGYC	1 cut(s)	1065
Hsp92II	CATG	4 cut(s)	274, 458, 516, 1110
HspAI	GCGC	3 cut(s)	44, 229, 868
Kzo9I	GATC	4 cut(s)	152, 199, 281, 475
Lsp1109I	GCAGC	2 cut(s)	252, 993
LweI	GCATC	2 cut(s)	633, 790
MaeI	CTAG	4 cut(s)	71, 197, 630, 773
MaeII	ACGT	2 cut(s)	744, 824
MaeIII	GTNAC	2 cut(s)	464, 674
MalI	GATC	4 cut(s)	154, 201, 283, 477
MboI	GATC	4 cut(s)	152, 199, 281, 475
MboII	GAAGA	5 cut(s)	43, 46, 134, 178, 194
MflI	RGATCY	3 cut(s)	152, 199, 281
MhlI	GDGCHC	2 cut(s)	656, 834
MluCI	AATT	3 cut(s)	209, 666, 1092
MlyI	GAGTC	3 cut(s)	251, 671, 1056
MnlI	CCTC	9 cut(s)	67, 132, 246, 364, 452, 489, 863, 904, 1027
MseI	TTAA	1 cut(s)	786
MspI	CCGG	4 cut(s)	657, 672, 726, 1068
MspR9I	CCNGG	3 cut(s)	657, 727, 735
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	3 cut(s)	46, 868, 870
MwoI	GCNNNNNNNGC	6 cut(s)	52, 139, 237, 630, 769, 987
NciI	CCSGG	2 cut(s)	657, 727
NdeII	GATC	4 cut(s)	152, 199, 281, 475
NlaIII	CATG	4 cut(s)	274, 458, 516, 1110
NlaIV	GGNNCC	6 cut(s)	318, 653, 654, 655, 845, 886
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	464, 674
NspI	RCATGY	1 cut(s)	516
PagI	TCATGA	2 cut(s)	270, 1106
PfeI	GAWTC	2 cut(s)	720, 1097
Pfl23II	CGTACG	1 cut(s)	825
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	135, 242, 732, 983
PleI	GAGTC	3 cut(s)	251, 671, 1055
PpsI	GAGTC	3 cut(s)	251, 671, 1055
Ppu21I	YACGTR	1 cut(s)	825
PsiI	TTATAA	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspLI	CGTACG	1 cut(s)	825
PspN4I	GGNNCC	6 cut(s)	318, 653, 654, 655, 845, 886
PspOMI	GGGCCC	1 cut(s)	652
PspPI	GGNCC	6 cut(s)	54, 343, 652, 653, 728, 790
PstI	CTGCAG	1 cut(s)	983
PstNI	CAGNNNCTG	1 cut(s)	639
PsuI	RGATCY	3 cut(s)	152, 199, 281
RsaI	GTAC	3 cut(s)	68, 528, 827
RsaNI	GTAC	3 cut(s)	67, 527, 826
SaqAI	TTAA	1 cut(s)	786
SatI	GCNGC	4 cut(s)	134, 241, 731, 982
Sau3AI	GATC	4 cut(s)	152, 199, 281, 475
Sau96I	GGNCC	6 cut(s)	54, 343, 652, 653, 728, 790
SchI	GAGTC	3 cut(s)	251, 671, 1056
ScrFI	CCNGG	3 cut(s)	657, 727, 735
SduI	GDGCHC	2 cut(s)	656, 834
SfaNI	GCATC	2 cut(s)	633, 790
SfcI	CTRYAG	2 cut(s)	979, 1086
SinI	GGWCC	1 cut(s)	343
Sse9I	AATT	3 cut(s)	209, 666, 1092
SsiI	CCGC	6 cut(s)	46, 133, 507, 516, 731, 866
SspMI	CTAG	4 cut(s)	71, 197, 630, 773
StyD4I	CCNGG	3 cut(s)	655, 725, 733
StyI	CCWWGG	4 cut(s)	366, 447, 568, 834
TaaI	ACNGT	4 cut(s)	411, 434, 470, 1087
TaiI	ACGT	2 cut(s)	747, 827
TaqI	TCGA	5 cut(s)	474, 523, 542, 966, 1030
TasI	AATT	3 cut(s)	209, 666, 1092
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	2 cut(s)	136, 733
TfiI	GAWTC	2 cut(s)	720, 1097
Tru1I	TTAA	1 cut(s)	786
Tru9I	TTAA	1 cut(s)	786
TscAI	CASTG	3 cut(s)	490, 773, 1090
TseFI	GTSAC	2 cut(s)	464, 674
TseI	GCWGC	2 cut(s)	240, 981
Tsp45I	GTSAC	2 cut(s)	464, 674
TspDTI	ATGAA	6 cut(s)	259, 384, 719, 792, 935, 1095
TspGWI	ACGGA	3 cut(s)	141, 179, 482
TspRI	CASTG	3 cut(s)	490, 773, 1090
Van91I	CCANNNNNTGG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	343
XagI	CCTNNNNNAGG	1 cut(s)	838
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	4 cut(s)	71, 197, 630, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.