Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006326.1

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

160257 .. 161570

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006326.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgggaaagaaaaacaaaacgagggacaagaagaagaagaaggttgcttgggataggcccatctacctgtacctactggtcaaggcagacgacaactcggggtcgtgtttatggttcgtcattgaagatggacggcggccgaggcaaatcagtggatctgaagagattgatgatgataaggtaatcttccgtcccctagatcttcccgaatttgatgatgatgacctgcgccttcctcacagcgttgtggtcctggactcccgattattcatgattagtggatatcaatgtagaaagcgagattcctctggtgcgaaatcctatattgggtatgattacttggacctgaaaccctcctacgaaggcaaggaatggcgttctgaacaaggggtttcattcccttcgcaagagtcgttggcctgctgcaaagacggtctcatctataccttgggacaggaatgttgtcaccgtctcggtcctcgctctggcgtctgttcggagtttcccgccacatgcgggtttcgaacacagcttggaatatcgaacaagtatatttacacctattccctcggtatttataatctcctgtttcgttatgatttggagaaaaacgagtgggactgcatctctagccgtttctggggtctctggggcgctggtgtggtgatttccgacgactcctacttattatgctttggcactatgaaacccaccgacaaattctccgagcggcttggtgtttacgtttttgatattcgccagcgtcagtggctagatgaaccggtcgagggcctcgatgatgctcttcccgttatcccagacacgtacgagccctgggaaaggcacctttacctcaacaaattaccgcgcttgttccaaatcggaaccaaaaaatttgctttcatttgggaggaacgttttgttgagggtcagggtctgcttcattgccacaagttcactatcaaccacatcccctgcagcagcagctctcatcgaaccaacaaccaacccacctcctttgttgcccgaatagtctcaagtggattccttactctgcaacgcgctggattacttggttgcgctgtaggaattgaatcttattcacgaggcaaaggaacagtggatcgcctgcacctgagaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

43.78

Weight (kDa)

7.88

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	843
AccBSI	CCGCTC	1 cut(s)	730
AccII	CGCG	2 cut(s)	868, 1062
AciI	CCGC	5 cut(s)	136, 507, 516, 730, 866
AclI	AACGTT	1 cut(s)	916
AclWI	GGATC	2 cut(s)	163, 1131
AcoI	YGGCCR	1 cut(s)	137
AcsI	RAATTY	3 cut(s)	209, 719, 893
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	489
AfaI	GTAC	2 cut(s)	71, 827
AfiI	CCNNNNNNNGG	6 cut(s)	327, 485, 516, 640, 788, 840
AflIII	ACRYGT	1 cut(s)	822
AgeI	ACCGGT	1 cut(s)	781
AgsI	TTSAA	2 cut(s)	125, 1094
AjnI	CCWGG	2 cut(s)	252, 833
AluBI	AGCT	3 cut(s)	532, 987, 1143
AluI	AGCT	3 cut(s)	532, 987, 1143
Alw26I	GTCTC	4 cut(s)	440, 476, 650, 1039
AlwI	GGATC	2 cut(s)	163, 1131
AlwNI	CAGNNNCTG	1 cut(s)	937
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	4 cut(s)	56, 137, 417, 790
ApeKI	GCWGC	4 cut(s)	423, 978, 981, 984
ApoI	RAATTY	3 cut(s)	209, 719, 893
AsiGI	ACCGGT	1 cut(s)	781
AspLEI	GCGC	5 cut(s)	231, 656, 870, 1064, 1082
AspS9I	GGNCC	5 cut(s)	57, 250, 343, 476, 790
AsuHPI	GGTGA	2 cut(s)	458, 676
AsuII	TTCGAA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	3 cut(s)	250, 343, 476
BanI	GGYRCC	1 cut(s)	843
BanII	GRGCYC	1 cut(s)	834
BauI	CACGAG	1 cut(s)	1104
BbvI	GCAGC	4 cut(s)	410, 990, 993, 996
BccI	CCATC	2 cut(s)	68, 122
BceAI	ACGGC	2 cut(s)	149, 618
BciT130I	CCWGG	2 cut(s)	254, 835
BcoDI	GTCTC	4 cut(s)	440, 476, 650, 1039
BfaI	CTAG	4 cut(s)	197, 630, 773, 1144
BfmI	CTRYAG	2 cut(s)	976, 1083
BfoI	RGCGCY	1 cut(s)	657
BfuAI	ACCTGC	1 cut(s)	234
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	6 cut(s)	137, 424, 731, 979, 982, 985
BlsI	GCNGC	6 cut(s)	138, 425, 732, 980, 983, 986
Bme1390I	CCNGG	2 cut(s)	254, 835
Bme18I	GGWCC	3 cut(s)	250, 343, 476
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	5 cut(s)	57, 250, 343, 476, 790
BmiI	GGNNCC	2 cut(s)	845, 886
BmrFI	CCNGG	2 cut(s)	254, 835
BmsI	GCATC	2 cut(s)	633, 790
Bpu14I	TTCGAA	1 cut(s)	523
BpuEI	CTTGAG	1 cut(s)	1021
BsaAI	YACGTR	1 cut(s)	825
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	2 cut(s)	440, 650
BsaJI	CCNNGG	5 cut(s)	140, 447, 568, 833, 834
BsaWI	WCCGGW	1 cut(s)	781
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	6 cut(s)	327, 485, 516, 640, 788, 840
Bse118I	RCCGGY	1 cut(s)	781
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	943
BseBI	CCWGG	2 cut(s)	254, 835
BseDI	CCNNGG	5 cut(s)	140, 447, 568, 833, 834
BseGI	GGATG	1 cut(s)	969
BseLI	CCNNNNNNNGG	6 cut(s)	327, 485, 516, 640, 788, 840
BseMI	GCAATG	1 cut(s)	943
BseMII	CTCAG	1 cut(s)	1127
BseNI	ACTGG	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	137
BseXI	GCAGC	4 cut(s)	410, 990, 993, 996
BsgI	GTGCAG	1 cut(s)	1115
Bsh1236I	CGCG	2 cut(s)	868, 1062
Bsh1285I	CGRYCG	2 cut(s)	140, 786
BshFI	GGCC	4 cut(s)	58, 139, 419, 792
BshNI	GGYRCC	1 cut(s)	843
BshTI	ACCGGT	1 cut(s)	781
BsiEI	CGRYCG	2 cut(s)	140, 786
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	782
BsiWI	CGTACG	1 cut(s)	825
BslFI	GGGAC	4 cut(s)	38, 177, 465, 632
BslI	CCNNNNNNNGG	6 cut(s)	327, 485, 516, 640, 788, 840
BsmAI	GTCTC	4 cut(s)	440, 476, 650, 1039
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	4 cut(s)	38, 177, 465, 632
BsnI	GGCC	4 cut(s)	58, 139, 419, 792
Bso31I	GGTCTC	2 cut(s)	440, 650
BsoBI	CYCGRG	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	834
Bsp143I	GATC	3 cut(s)	155, 199, 1123
BspACI	CCGC	5 cut(s)	136, 507, 516, 730, 866
BspANI	GGCC	4 cut(s)	58, 139, 419, 792
BspCNI	CTCAG	1 cut(s)	1128
BspFNI	CGCG	2 cut(s)	868, 1062
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	845, 886
BspMAI	CTGCAG	1 cut(s)	980
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	163, 1131
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	523
BspT107I	GGYRCC	1 cut(s)	843
BspTNI	GGTCTC	2 cut(s)	440, 650
BsrBI	CCGCTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	943
BsrFI	RCCGGY	1 cut(s)	781
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	781
BssECI	CCNNGG	5 cut(s)	140, 447, 568, 833, 834
BssMI	GATC	3 cut(s)	155, 199, 1123
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	1104
BssT1I	CCWWGG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	1104
Bst2UI	CCWGG	2 cut(s)	254, 835
Bst4CI	ACNGT	3 cut(s)	434, 470, 1120
Bst6I	CTCTTC	2 cut(s)	156, 810
BstACI	GRCGYC	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	825
BstBI	TTCGAA	1 cut(s)	523
BstC8I	GCNNGC	3 cut(s)	421, 761, 1130
BstDEI	CTNAG	1 cut(s)	1136
BstENI	CCTNNNNNAGG	1 cut(s)	838
BstF5I	GGATG	1 cut(s)	969
BstFNI	CGCG	2 cut(s)	868, 1062
BstH2I	RGCGCY	1 cut(s)	657
BstHHI	GCGC	5 cut(s)	231, 656, 870, 1064, 1082
BstKTI	GATC	3 cut(s)	158, 202, 1126
BstMAI	GTCTC	4 cut(s)	440, 476, 650, 1039
BstMBI	GATC	3 cut(s)	155, 199, 1123
BstMCI	CGRYCG	2 cut(s)	140, 786
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 630, 769, 984
BstNI	CCWGG	2 cut(s)	254, 835
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	2 cut(s)	252, 833
BstSFI	CTRYAG	2 cut(s)	976, 1083
BstUI	CGCG	2 cut(s)	868, 1062
BstV1I	GCAGC	4 cut(s)	410, 990, 993, 996
BstX2I	RGATCY	2 cut(s)	155, 199
BstYI	RGATCY	2 cut(s)	155, 199
BstZI	CGGCCG	1 cut(s)	137
BsuRI	GGCC	4 cut(s)	58, 139, 419, 792
BtsCI	GGATG	1 cut(s)	969
BtsIMutI	CAGTG	3 cut(s)	157, 773, 1125
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	3 cut(s)	421, 761, 1130
CaiI	CAGNNNCTG	1 cut(s)	937
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	5 cut(s)	231, 656, 870, 1064, 1082
Cfr10I	RCCGGY	1 cut(s)	781
Cfr13I	GGNCC	5 cut(s)	57, 250, 343, 476, 790
CseI	GACGC	2 cut(s)	478, 752
Csp6I	GTAC	2 cut(s)	70, 826
CspAI	ACCGGT	1 cut(s)	781
CspCI	CAANNNNNGTGG	2 cut(s)	1000, 1035
CviAII	CATG	2 cut(s)	271, 513
CviQI	GTAC	2 cut(s)	70, 826
DdeI	CTNAG	1 cut(s)	1136
DpnI	GATC	3 cut(s)	157, 201, 1125
DpnII	GATC	3 cut(s)	155, 199, 1123
EaeI	YGGCCR	1 cut(s)	137
EagI	CGGCCG	1 cut(s)	137
Eam1104I	CTCTTC	2 cut(s)	156, 810
EarI	CTCTTC	2 cut(s)	156, 810
EclXI	CGGCCG	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	834
Eco31I	GGTCTC	2 cut(s)	440, 650
Eco32I	GATATC	1 cut(s)	284
Eco47I	GGWCC	3 cut(s)	250, 343, 476
Eco52I	CGGCCG	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	1 cut(s)	838
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	252, 833
EcoRV	GATATC	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	834
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	2 cut(s)	274, 516
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	4 cut(s)	38, 177, 465, 632
FatI	CATG	2 cut(s)	270, 512
FauI	CCCGC	2 cut(s)	509, 514
Fnu4HI	GCNGC	6 cut(s)	137, 424, 731, 979, 982, 985
FokI	GGATG	1 cut(s)	956
FriOI	GRGCYC	1 cut(s)	834
Fsp4HI	GCNGC	6 cut(s)	137, 424, 731, 979, 982, 985
FspBI	CTAG	4 cut(s)	197, 630, 773, 1144
GlaI	GCGC	5 cut(s)	230, 655, 869, 1063, 1081
GluI	GCNGC	6 cut(s)	137, 424, 731, 979, 982, 985
HaeII	RGCGCY	1 cut(s)	657
HaeIII	GGCC	4 cut(s)	58, 139, 419, 792
HapII	CCGG	1 cut(s)	782
HgaI	GACGC	2 cut(s)	478, 752
HhaI	GCGC	5 cut(s)	231, 656, 870, 1064, 1082
Hin1I	GRCGYC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	274, 516
Hin6I	GCGC	5 cut(s)	229, 654, 868, 1062, 1080
HinP1I	GCGC	5 cut(s)	229, 654, 868, 1062, 1080
HinfI	GANTC	6 cut(s)	257, 302, 410, 677, 1044, 1094
HpaII	CCGG	1 cut(s)	782
HphI	GGTGA	2 cut(s)	458, 676
Hpy166II	GTNNAC	2 cut(s)	742, 957
Hpy188I	TCNGA	6 cut(s)	160, 382, 499, 673, 727, 884
Hpy188III	TCNNGA	4 cut(s)	206, 261, 271, 1104
Hpy8I	GTNNAC	2 cut(s)	742, 957
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	4 cut(s)	34, 242, 356, 411
HpyCH4III	ACNGT	3 cut(s)	434, 470, 1120
HpyCH4IV	ACGT	3 cut(s)	744, 824, 916
HpyCH4V	TGCA	5 cut(s)	426, 624, 978, 1057, 1132
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 630, 769, 984
HpyF3I	CTNAG	1 cut(s)	1136
HpySE526I	ACGT	3 cut(s)	744, 824, 916
Hsp92I	GRCGYC	1 cut(s)	489
Hsp92II	CATG	2 cut(s)	274, 516
HspAI	GCGC	5 cut(s)	229, 654, 868, 1062, 1080
Kzo9I	GATC	3 cut(s)	155, 199, 1123
LguI	GCTCTTC	1 cut(s)	810
Lsp1109I	GCAGC	4 cut(s)	410, 990, 993, 996
LweI	GCATC	2 cut(s)	633, 790
MaeI	CTAG	4 cut(s)	197, 630, 773, 1144
MaeII	ACGT	3 cut(s)	744, 824, 916
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	3 cut(s)	157, 201, 1125
MbiI	CCGCTC	1 cut(s)	730
MboI	GATC	3 cut(s)	155, 199, 1123
MboII	GAAGA	8 cut(s)	43, 46, 49, 137, 173, 178, 194, 797
MflI	RGATCY	2 cut(s)	155, 199
MhlI	GDGCHC	1 cut(s)	834
MluCI	AATT	5 cut(s)	209, 719, 860, 893, 1089
MlyI	GAGTC	3 cut(s)	251, 419, 671
MmeI	TCCRAC	1 cut(s)	696
MspI	CCGG	1 cut(s)	782
MspR9I	CCNGG	2 cut(s)	254, 835
MvaI	CCWGG	2 cut(s)	254, 835
MvnI	CGCG	2 cut(s)	868, 1062
MwoI	GCNNNNNNNGC	4 cut(s)	142, 630, 769, 984
NdeII	GATC	3 cut(s)	155, 199, 1123
NlaIII	CATG	2 cut(s)	274, 516
NlaIV	GGNNCC	2 cut(s)	845, 886
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	516
NspV	TTCGAA	1 cut(s)	523
PagI	TCATGA	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	834
PciSI	GCTCTTC	1 cut(s)	810
PcsI	WCGNNNNNNNCGW	2 cut(s)	410, 792
PfeI	GAWTC	3 cut(s)	302, 1044, 1094
Pfl23II	CGTACG	1 cut(s)	825
PfoI	TCCNGGA	1 cut(s)	252
PinAI	ACCGGT	1 cut(s)	781
PkrI	GCNGC	6 cut(s)	138, 425, 732, 980, 983, 986
PleI	GAGTC	3 cut(s)	251, 418, 671
PpsI	GAGTC	3 cut(s)	251, 418, 671
Ppu21I	YACGTR	1 cut(s)	825
PsiI	TTATAA	1 cut(s)	579
Psp1406I	AACGTT	1 cut(s)	916
Psp6I	CCWGG	2 cut(s)	252, 833
PspGI	CCWGG	2 cut(s)	252, 833
PspLI	CGTACG	1 cut(s)	825
PspN4I	GGNNCC	2 cut(s)	845, 886
PspPI	GGNCC	5 cut(s)	57, 250, 343, 476, 790
PstI	CTGCAG	1 cut(s)	980
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	2 cut(s)	155, 199
RsaI	GTAC	2 cut(s)	71, 827
RsaNI	GTAC	2 cut(s)	70, 826
SapI	GCTCTTC	1 cut(s)	810
SatI	GCNGC	6 cut(s)	137, 424, 731, 979, 982, 985
Sau3AI	GATC	3 cut(s)	155, 199, 1123
Sau96I	GGNCC	5 cut(s)	57, 250, 343, 476, 790
SchI	GAGTC	3 cut(s)	251, 419, 671
ScrFI	CCNGG	2 cut(s)	254, 835
SduI	GDGCHC	1 cut(s)	834
SfaNI	GCATC	2 cut(s)	633, 790
SfcI	CTRYAG	2 cut(s)	976, 1083
SfuI	TTCGAA	1 cut(s)	523
SinI	GGWCC	3 cut(s)	250, 343, 476
SmlI	CTYRAG	1 cut(s)	1036
SmoI	CTYRAG	1 cut(s)	1036
Sse9I	AATT	5 cut(s)	209, 719, 860, 893, 1089
SsiI	CCGC	5 cut(s)	136, 507, 516, 730, 866
SspMI	CTAG	4 cut(s)	197, 630, 773, 1144
StyD4I	CCNGG	2 cut(s)	252, 833
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	434, 470, 1120
TaiI	ACGT	3 cut(s)	747, 827, 919
TaqI	TCGA	5 cut(s)	523, 542, 786, 795, 994
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	5 cut(s)	209, 719, 860, 893, 1089
TauI	GCSGC	2 cut(s)	139, 733
TfiI	GAWTC	3 cut(s)	302, 1044, 1094
TscAI	CASTG	3 cut(s)	157, 773, 1125
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	4 cut(s)	423, 978, 981, 984
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	6 cut(s)	259, 384, 719, 792, 892, 932
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	3 cut(s)	157, 773, 1125
VpaK11BI	GGWCC	3 cut(s)	250, 343, 476
XagI	CCTNNNNNAGG	1 cut(s)	838
XapI	RAATTY	3 cut(s)	209, 719, 893
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	4 cut(s)	197, 630, 773, 1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.