FvH4_7g21671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001936
Physical Location & Seq
Forward (+)
17263208 .. 17264632
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21671.t1

Sequence Viewer

Length: 1086 bp
ATGACAACCAAAACGAGGGACAGTCCCTTGTACGTTCAGGTCCGTGAGGGCGAATCATCGTTATGGTTCGTAATCGAGGATGGAAGCCAGAACCAAGAAGAAGAAGAAGAAGATGATGATGATATTATCTTCCGTCCTCTTGATCTTCCGCAGTTCAGTTACCAGCGCTGCCCACGGAACATTTTGGTCATCAACTCCCAATTATACCTCCTCGGTGGTGTTAAAATTAATTACCGTCCGGTACCAGAAGGGGAAATTCAGTTCTTTCACCCGGAACCCGCCAGGGAATATGAGTTCTTGGACTTGCAAGAACCGAGGTTCCATTGGCGTCGCCAGTCCTTTGGTCAATATCACAATTACACTCAACATATGGCTTCCTCTAAAGATGGTTTGATCTATGGCTTCGGACCTCAATCTTACATAATGAATCTTTCTAGCCTCTCTGATGATGTTGTCACTACCGAACCGCTGCCTAGAATGATTGGAGAATATGCTCACGTCCCACAGCCTCTTGCTATTTCTAACAACAAGATTTACGCCTATGGCCGCGCAGGTATCTCGCCGCACTATTTGTTTTCTTATGATATAGAAGAGAAAAGGTGGGACTGCCTCTTTAAACATTTCTGGGGTGACTGGACCCCTGGAGTGGTGCTTTCTGGAGACTCCTACTTAATAGCCTACGGGTCAAGGCACCCCATAATGGGGGATACGGAGAGGCCCGGTTTGTGGGTGTTTGATATTAACCTGCGGCAATGGCTGCATGAACCAGTTGAGGGCCTTGATGAGGCGCTTCTGGTTATCCCAGACTGGGTCCATGACCAAGTGGGATACGTTTACGTGTACTACTTACCGTGCTTGTTCCAAATCGGAAAGCACAGGTTTGCTCTGATTTGGGAGGAATCGGGTGATGAGAGTTATAAGCTTCATTGCCACAAATTCACATTGCAGGCTCCTGCCTCTGCTGATCAACCCTTTGTTGCTCGACAACTCTCAAGTAAGGTCAAGACTCTCAATGGCGGCAACAACAAAATATTCGGTTGCACTGTAGGACTGGAAACTGAACAAGGACGAGAAGATGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

41.77

Weight (kDa)

5.01

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
Acc36I ACCTGC 2 cut(s) 542, 753
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 2 cut(s) 241, 690
AccII CGCG 1 cut(s) 549
AciI CCGC 7 cut(s) 149, 279, 467, 547, 563, 748, 1017
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 2 cut(s) 255, 935
AcyI GRCGYC 1 cut(s) 328
AfaI GTAC 3 cut(s) 32, 243, 842
AfeI AGCGCT 1 cut(s) 167
AfiI CCNNNNNNNGG 9 cut(s) 15, 646, 700, 701, 702, 726, 773, 784, 808
AflIII ACRYGT 1 cut(s) 837
AjiI CACGTC 1 cut(s) 499
AjnI CCWGG 2 cut(s) 281, 640
AloI GAACNNNNNNTCC 6 cut(s) 245, 277, 278, 303, 310, 335
AluBI AGCT 1 cut(s) 922
AluI AGCT 1 cut(s) 922
Alw26I GTCTC 1 cut(s) 654
Aor51HI AGCGCT 1 cut(s) 167
AoxI GGCC 3 cut(s) 544, 716, 775
ApeKI GCWGC 3 cut(s) 168, 469, 757
ApoI RAATTY 2 cut(s) 255, 935
AseI ATTAAT 1 cut(s) 228
Asp718I GGTACC 1 cut(s) 241
AspLEI GCGC 3 cut(s) 168, 551, 790
AspS9I GGNCC 6 cut(s) 40, 407, 636, 717, 775, 811
AsuC2I CCSGG 2 cut(s) 272, 720
AsuHPI GGTGA 3 cut(s) 260, 641, 917
AvaII GGWCC 4 cut(s) 40, 407, 636, 811
BanI GGYRCC 2 cut(s) 241, 690
BbvI GCAGC 3 cut(s) 155, 456, 744
BccI CCATC 2 cut(s) 74, 380
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 2 cut(s) 283, 642
BciVI GTATCC 2 cut(s) 700, 821
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 2 cut(s) 272, 720
BcoDI GTCTC 1 cut(s) 654
BfaI CTAG 2 cut(s) 435, 474
BfmI CTRYAG 1 cut(s) 1044
BfoI RGCGCY 2 cut(s) 169, 791
BfuAI ACCTGC 2 cut(s) 542, 753
BfuI GTATCC 2 cut(s) 700, 821
BisI GCNGC 7 cut(s) 169, 470, 547, 563, 749, 758, 1018
BlsI GCNGC 7 cut(s) 170, 471, 548, 564, 750, 759, 1019
Bme1390I CCNGG 4 cut(s) 272, 283, 642, 720
Bme18I GGWCC 4 cut(s) 40, 407, 636, 811
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 6 cut(s) 40, 407, 636, 717, 775, 811
BmiI GGNNCC 7 cut(s) 243, 276, 320, 638, 692, 812, 951
BmrFI CCNGG 4 cut(s) 272, 283, 642, 720
BmrI ACTGGG 1 cut(s) 817
BmuI ACTGGG 1 cut(s) 817
BpmI CTGGAG 2 cut(s) 663, 678
BpuEI CTTGAG 1 cut(s) 976
BpuMI CCSGG 2 cut(s) 272, 720
BsaAI YACGTR 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 328
BsaJI CCNNGG 5 cut(s) 173, 211, 282, 314, 640
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 9 cut(s) 15, 646, 700, 701, 702, 726, 773, 784, 808
Bse1I ACTGG 5 cut(s) 334, 638, 767, 812, 1056
Bse3DI GCAATG 3 cut(s) 758, 925, 941
BseBI CCWGG 2 cut(s) 283, 642
BseDI CCNNGG 5 cut(s) 173, 211, 282, 314, 640
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 9 cut(s) 15, 646, 700, 701, 702, 726, 773, 784, 808
BseMI GCAATG 3 cut(s) 758, 925, 941
BseNI ACTGG 5 cut(s) 334, 638, 767, 812, 1056
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 155, 456, 744
Bsh1236I CGCG 1 cut(s) 549
BshFI GGCC 3 cut(s) 546, 718, 777
BshNI GGYRCC 2 cut(s) 241, 690
BsiSI CCGG 3 cut(s) 239, 272, 720
BslFI GGGAC 4 cut(s) 9, 32, 485, 617
BslI CCNNNNNNNGG 9 cut(s) 15, 646, 700, 701, 702, 726, 773, 784, 808
BsmAI GTCTC 1 cut(s) 654
BsmFI GGGAC 4 cut(s) 9, 32, 485, 617
BsnI GGCC 3 cut(s) 546, 718, 777
Bsp143I GATC 3 cut(s) 142, 393, 964
BspACI CCGC 7 cut(s) 149, 279, 467, 547, 563, 748, 1017
BspANI GGCC 3 cut(s) 546, 718, 777
BspFNI CGCG 1 cut(s) 549
BspLI GGNNCC 7 cut(s) 243, 276, 320, 638, 692, 812, 951
BspMI ACCTGC 2 cut(s) 542, 753
BspT107I GGYRCC 2 cut(s) 241, 690
BsrDI GCAATG 3 cut(s) 758, 925, 941
BsrI ACTGG 5 cut(s) 334, 638, 767, 812, 1056
BssECI CCNNGG 5 cut(s) 173, 211, 282, 314, 640
BssMI GATC 3 cut(s) 142, 393, 964
BssNI GRCGYC 1 cut(s) 328
Bst2UI CCWGG 2 cut(s) 283, 642
Bst4CI ACNGT 4 cut(s) 23, 236, 852, 1045
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 1 cut(s) 948
BstDSI CCRYGG 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 782
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 549
BstH2I RGCGCY 2 cut(s) 169, 791
BstHHI GCGC 3 cut(s) 168, 551, 790
BstKTI GATC 3 cut(s) 145, 396, 967
BstMAI GTCTC 1 cut(s) 654
BstMBI GATC 3 cut(s) 142, 393, 964
BstMWI GCNNNNNNNGC 2 cut(s) 754, 757
BstNI CCWGG 2 cut(s) 283, 642
BstSCI CCNGG 4 cut(s) 270, 281, 640, 718
BstSFI CTRYAG 1 cut(s) 1044
BstUI CGCG 1 cut(s) 549
BstV1I GCAGC 3 cut(s) 155, 456, 744
BstXI CCANNNNNNTGG 1 cut(s) 341
BsuI GTATCC 2 cut(s) 700, 821
BsuRI GGCC 3 cut(s) 546, 718, 777
BtgI CCRYGG 1 cut(s) 173
BtrI CACGTC 1 cut(s) 499
BtsCI GGATG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 1041
BveI ACCTGC 2 cut(s) 542, 753
Cac8I GCNNGC 1 cut(s) 948
CfoI GCGC 3 cut(s) 168, 551, 790
Cfr13I GGNCC 6 cut(s) 40, 407, 636, 717, 775, 811
CseI GACGC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 31, 242, 841
CviAII CATG 2 cut(s) 761, 815
CviQI GTAC 3 cut(s) 31, 242, 841
DpnI GATC 3 cut(s) 144, 395, 966
DpnII GATC 3 cut(s) 142, 393, 964
DraI TTTAAA 1 cut(s) 616
EaeI YGGCCR 1 cut(s) 544
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco47I GGWCC 4 cut(s) 40, 407, 636, 811
Eco47III AGCGCT 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 782
EcoO109I RGGNCCY 1 cut(s) 775
EcoRII CCWGG 2 cut(s) 281, 640
FaeI CATG 2 cut(s) 764, 818
FaqI GGGAC 4 cut(s) 9, 32, 485, 617
FatI CATG 2 cut(s) 760, 814
FauI CCCGC 1 cut(s) 286
FauNDI CATATG 1 cut(s) 369
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 7 cut(s) 169, 470, 547, 563, 749, 758, 1018
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 7 cut(s) 169, 470, 547, 563, 749, 758, 1018
FspBI CTAG 2 cut(s) 435, 474
GlaI GCGC 3 cut(s) 167, 550, 789
GluI GCNGC 7 cut(s) 169, 470, 547, 563, 749, 758, 1018
GsuI CTGGAG 2 cut(s) 663, 678
HaeII RGCGCY 2 cut(s) 169, 791
HaeIII GGCC 3 cut(s) 546, 718, 777
HapII CCGG 3 cut(s) 239, 272, 720
HgaI GACGC 1 cut(s) 317
HhaI GCGC 3 cut(s) 168, 551, 790
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 2 cut(s) 764, 818
Hin6I GCGC 3 cut(s) 166, 549, 788
HinP1I GCGC 3 cut(s) 166, 549, 788
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 5 cut(s) 53, 427, 662, 899, 1006
HpaII CCGG 3 cut(s) 239, 272, 720
HphI GGTGA 3 cut(s) 260, 641, 917
Hpy166II GTNNAC 2 cut(s) 835, 841
Hpy188I TCNGA 4 cut(s) 407, 445, 869, 888
Hpy188III TCNNGA 3 cut(s) 140, 657, 1003
Hpy8I GTNNAC 2 cut(s) 835, 841
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 4 cut(s) 23, 236, 852, 1045
HpyCH4IV ACGT 4 cut(s) 33, 498, 831, 837
HpyCH4V TGCA 4 cut(s) 307, 760, 946, 1041
HpyF10VI GCNNNNNNNGC 2 cut(s) 754, 757
HpySE526I ACGT 4 cut(s) 33, 498, 831, 837
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 2 cut(s) 764, 818
HspAI GCGC 3 cut(s) 166, 549, 788
KpnI GGTACC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 3 cut(s) 142, 393, 964
LmnI GCTCC 1 cut(s) 955
Lsp1109I GCAGC 3 cut(s) 155, 456, 744
MaeI CTAG 2 cut(s) 435, 474
MaeII ACGT 4 cut(s) 33, 498, 831, 837
MaeIII GTNAC 3 cut(s) 158, 454, 629
MalI GATC 3 cut(s) 144, 395, 966
MboI GATC 3 cut(s) 142, 393, 964
MboII GAAGA 9 cut(s) 110, 113, 116, 119, 121, 122, 137, 602, 1085
MluCI AATT 6 cut(s) 200, 225, 229, 255, 355, 935
MlyI GAGTC 2 cut(s) 656, 1000
MmeI TCCRAC 1 cut(s) 1060
MseI TTAA 5 cut(s) 222, 228, 615, 671, 741
MslI CAYNNNNRTG 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 469
MspI CCGG 3 cut(s) 239, 272, 720
MspR9I CCNGG 4 cut(s) 272, 283, 642, 720
MvaI CCWGG 2 cut(s) 283, 642
MvnI CGCG 1 cut(s) 549
MwoI GCNNNNNNNGC 2 cut(s) 754, 757
NciI CCSGG 2 cut(s) 272, 720
NdeI CATATG 1 cut(s) 369
NdeII GATC 3 cut(s) 142, 393, 964
NlaIII CATG 2 cut(s) 764, 818
NlaIV GGNNCC 7 cut(s) 243, 276, 320, 638, 692, 812, 951
NmuCI GTSAC 2 cut(s) 454, 629
PfeI GAWTC 3 cut(s) 53, 427, 899
PflFI GACNNNGTC 1 cut(s) 809
PkrI GCNGC 7 cut(s) 170, 471, 548, 564, 750, 759, 1019
PleI GAGTC 2 cut(s) 656, 1000
PpsI GAGTC 2 cut(s) 656, 1000
Ppu21I YACGTR 1 cut(s) 838
PshBI ATTAAT 1 cut(s) 228
PsiI TTATAA 1 cut(s) 918
Psp6I CCWGG 2 cut(s) 281, 640
PspGI CCWGG 2 cut(s) 281, 640
PspN4I GGNNCC 7 cut(s) 243, 276, 320, 638, 692, 812, 951
PspPI GGNCC 6 cut(s) 40, 407, 636, 717, 775, 811
PsyI GACNNNGTC 1 cut(s) 809
RsaI GTAC 3 cut(s) 32, 243, 842
RsaNI GTAC 3 cut(s) 31, 242, 841
RseI CAYNNNNRTG 1 cut(s) 61
SaqAI TTAA 5 cut(s) 222, 228, 615, 671, 741
SatI GCNGC 7 cut(s) 169, 470, 547, 563, 749, 758, 1018
Sau3AI GATC 3 cut(s) 142, 393, 964
Sau96I GGNCC 6 cut(s) 40, 407, 636, 717, 775, 811
SchI GAGTC 2 cut(s) 656, 1000
ScrFI CCNGG 4 cut(s) 272, 283, 642, 720
SfcI CTRYAG 1 cut(s) 1044
SinI GGWCC 4 cut(s) 40, 407, 636, 811
SmiMI CAYNNNNRTG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 991
SmoI CTYRAG 1 cut(s) 991
Sse9I AATT 6 cut(s) 200, 225, 229, 255, 355, 935
SsiI CCGC 7 cut(s) 149, 279, 467, 547, 563, 748, 1017
SspI AATATT 1 cut(s) 1032
SspMI CTAG 2 cut(s) 435, 474
StyD4I CCNGG 4 cut(s) 270, 281, 640, 718
TaaI ACNGT 4 cut(s) 23, 236, 852, 1045
TaiI ACGT 4 cut(s) 36, 501, 834, 840
TaqI TCGA 2 cut(s) 75, 982
TasI AATT 6 cut(s) 200, 225, 229, 255, 355, 935
TatI WGTACW 1 cut(s) 840
TauI GCSGC 4 cut(s) 549, 565, 751, 1020
TfiI GAWTC 3 cut(s) 53, 427, 899
Tru1I TTAA 5 cut(s) 222, 228, 615, 671, 741
Tru9I TTAA 5 cut(s) 222, 228, 615, 671, 741
TscAI CASTG 1 cut(s) 1048
TseFI GTSAC 2 cut(s) 454, 629
TseI GCWGC 3 cut(s) 168, 469, 757
Tsp45I GTSAC 2 cut(s) 454, 629
TspDTI ATGAA 3 cut(s) 440, 777, 914
TspGWI ACGGA 4 cut(s) 32, 122, 190, 725
TspRI CASTG 1 cut(s) 1048
Tth111I GACNNNGTC 1 cut(s) 809
VpaK11BI GGWCC 4 cut(s) 40, 407, 636, 811
VspI ATTAAT 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 782
XapI RAATTY 2 cut(s) 255, 935
XspI CTAG 2 cut(s) 435, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.