Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

38841736 .. 38842401

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGGAAGAAAAACAAAACAAGGGACAAGAAGAAGAAGGTTGCTTGGGACAGGCCCATCTACCTGTACCTACAGGTCAAGGCAGACGGCAACTCGGTGTCGTGTTTATGGTTCGTCATTGAAGATGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGATGATGATGATGAGGTAATCTTCCGTCCCATAAATCTTCCCGAATTTGATGATGCTTACCTACGCCTTCTGCGCAGCGTTGTGGTCCTGGACTCTGGATTGTACATGATTGGTGGATCTCAATGTAGAACGCGAGATTCCTCTGGTGTGGAACCCTACATTGGCAATGTTGTCACCGTCTCGATCCTCGCTTTGGTGTCTGTTTGGAGTTTCCCGCCACATGCGGGTTTCGAACACAGCTTGGAATATCGAACAAGTGTATTTACACCTATTCCCTTGGTATTTACAATCTCCTATTTCGTTATGATTTGGAGAAAAACGAGTGGGACTGCATCTCGAGCAGGTTCTGGGGTCTCTGGGGCCCTGGAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.26

Weight (kDa)

6.74

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	500
AccII	CGCG	1 cut(s)	301
AciI	CCGC	3 cut(s)	133, 383, 392
AclWI	GGATC	3 cut(s)	160, 292, 346
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	68, 272
AfiI	CCNNNNNNNGG	4 cut(s)	329, 361, 392, 537
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	2 cut(s)	255, 531
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	1 cut(s)	408
AluI	AGCT	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	352, 526
AlwI	GGATC	3 cut(s)	160, 292, 346
AlwNI	CAGNNNCTG	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	3 cut(s)	53, 134, 528
ApaI	GGGCCC	1 cut(s)	532
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	4 cut(s)	54, 253, 528, 529
AsuHPI	GGTGA	1 cut(s)	334
AsuII	TTCGAA	1 cut(s)	399
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	532
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	2 cut(s)	65, 119
BceAI	ACGGC	2 cut(s)	103, 146
BciT130I	CCWGG	2 cut(s)	257, 533
BcoDI	GTCTC	2 cut(s)	352, 526
BfmI	CTRYAG	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	500
BisI	GCNGC	2 cut(s)	134, 244
BlsI	GCNGC	2 cut(s)	135, 245
Bme1390I	CCNGG	2 cut(s)	257, 533
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	4 cut(s)	54, 253, 528, 529
BmiI	GGNNCC	3 cut(s)	321, 529, 530
BmrFI	CCNGG	2 cut(s)	257, 533
BmsI	GCATC	2 cut(s)	211, 509
Bpu14I	TTCGAA	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	137, 444, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 361, 392, 537
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	257, 533
BseDI	CCNNGG	3 cut(s)	137, 444, 531
BseLI	CCNNNNNNNGG	4 cut(s)	329, 361, 392, 537
BseMI	GCAATG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	532
BseX3I	CGGCCG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	55, 136, 530
BsiEI	CGRYCG	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	504
BslFI	GGGAC	4 cut(s)	38, 62, 180, 508
BslI	CCNNNNNNNGG	4 cut(s)	329, 361, 392, 537
BsmAI	GTCTC	2 cut(s)	352, 526
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	4 cut(s)	38, 62, 180, 508
BsnI	GGCC	3 cut(s)	55, 136, 530
Bso31I	GGTCTC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	504
Bsp119I	TTCGAA	1 cut(s)	399
Bsp120I	GGGCCC	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	152, 284, 351
BspACI	CCGC	3 cut(s)	133, 383, 392
BspANI	GGCC	3 cut(s)	55, 136, 530
BspFNI	CGCG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	321, 529, 530
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	3 cut(s)	160, 292, 346
BspT104I	TTCGAA	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	340
BsrGI	TGTACA	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	137, 444, 531
BssMI	GATC	3 cut(s)	152, 284, 351
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	2 cut(s)	257, 533
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	270
BstBI	TTCGAA	1 cut(s)	399
BstFNI	CGCG	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	3 cut(s)	155, 287, 354
BstMAI	GTCTC	2 cut(s)	352, 526
BstMBI	GATC	3 cut(s)	152, 284, 351
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 240, 506
BstNI	CCWGG	2 cut(s)	257, 533
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	255, 531
BstSFI	CTRYAG	1 cut(s)	71
BstSLI	GKGCMC	1 cut(s)	532
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	152, 284
BstYI	RGATCY	2 cut(s)	152, 284
BstZI	CGGCCG	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	55, 136, 530
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	500
CaiI	CAGNNNCTG	1 cut(s)	515
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	4 cut(s)	54, 253, 528, 529
Csp6I	GTAC	2 cut(s)	67, 271
CviAII	CATG	2 cut(s)	274, 389
CviJI	RGCY	4 cut(s)	55, 136, 408, 530
CviKI_1	RGCY	4 cut(s)	55, 136, 408, 530
CviQI	GTAC	2 cut(s)	67, 271
DpnI	GATC	3 cut(s)	154, 286, 353
DpnII	GATC	3 cut(s)	152, 284, 351
EaeI	YGGCCR	1 cut(s)	134
EagI	CGGCCG	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	504
EcoO109I	RGGNCCY	2 cut(s)	528, 529
EcoRII	CCWGG	2 cut(s)	255, 531
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	2 cut(s)	277, 392
FaiI	YATR	5 cut(s)	109, 200, 275, 390, 473
FaqI	GGGAC	4 cut(s)	38, 62, 180, 508
FatI	CATG	2 cut(s)	273, 388
FauI	CCCGC	2 cut(s)	385, 390
Fnu4HI	GCNGC	2 cut(s)	134, 244
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	2 cut(s)	134, 244
FspI	TGCGCA	1 cut(s)	242
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	2 cut(s)	134, 244
HaeIII	GGCC	3 cut(s)	55, 136, 530
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	277, 392
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	260, 305
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	209, 264, 349, 504
HpyAV	CCTTC	2 cut(s)	31, 245
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 240, 506
Hsp92II	CATG	2 cut(s)	277, 392
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	152, 284, 351
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	2 cut(s)	211, 509
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	3 cut(s)	154, 286, 353
MboI	GATC	3 cut(s)	152, 284, 351
MboII	GAAGA	7 cut(s)	19, 43, 46, 134, 170, 181, 197
MflI	RGATCY	2 cut(s)	152, 284
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	4 cut(s)	132, 175, 319, 365
MspR9I	CCNGG	2 cut(s)	257, 533
MvaI	CCWGG	2 cut(s)	257, 533
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	139, 240, 506
NdeII	GATC	3 cut(s)	152, 284, 351
NlaIII	CATG	2 cut(s)	277, 392
NlaIV	GGNNCC	3 cut(s)	321, 529, 530
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	340
NsbI	TGCGCA	1 cut(s)	242
NspI	RCATGY	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	135, 245
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	255, 531
PspGI	CCWGG	2 cut(s)	255, 531
PspN4I	GGNNCC	3 cut(s)	321, 529, 530
PspOMI	GGGCCC	1 cut(s)	528
PspPI	GGNCC	4 cut(s)	54, 253, 528, 529
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	2 cut(s)	152, 284
RsaI	GTAC	2 cut(s)	68, 272
RsaNI	GTAC	2 cut(s)	67, 271
SatI	GCNGC	2 cut(s)	134, 244
Sau3AI	GATC	3 cut(s)	152, 284, 351
Sau96I	GGNCC	4 cut(s)	54, 253, 528, 529
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	257, 533
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	9 cut(s)	42, 66, 72, 78, 186, 231, 410, 439, 514
SfaNI	GCATC	2 cut(s)	211, 509
SfcI	CTRYAG	1 cut(s)	71
Sfr274I	CTCGAG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	399
SinI	GGWCC	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	3 cut(s)	133, 383, 392
StyD4I	CCNGG	2 cut(s)	255, 531
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	4 cut(s)	350, 399, 418, 505
TasI	AATT	1 cut(s)	212
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	340
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.