Rh1CG233300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
49025790 .. 49033745
7956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG233300.1

Sequence Viewer

Length: 1164 bp
ATGGGAAAGAAAAACAAAACGAGGGACAAGAAGAAGAAGAAGGAGGTTGCTTGGGATAGGCCCATCTACCTGTACCTACTGGTCAAGGCAGACGACAACTCGGGGTCGTGTTTATGGTTCGTCATTGAAGATGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGATAATGATGATGATAAGGTAATCTTCCGTCCCCTAGATCTTCCCGAATTTGATGATGATGACATGCGCCTTCCTCACGGCGTTGTGGTCCTGGACTCCCGATTATTCATGATTAGTGGATATCAATGTAGAAAGCGAGATTCCTCTGGTGTGAAATCCTATATTGGGTATGATTACTTGGACCTGAAGCCCTCCTACGAAGGCAAGGAATGGCGTTCTGAACAAGGGGTTTCATTCCCTTCGCAAGAGTCGTTGGCCTGCTGCAAAGACGGTCTCATCTATACCTTGGGACAGGAATGTTGTCACCGTCTCGATCCTCGCTCTGGTGTCTGTTCGGAGTTTCCCGCCACATGCGGGTTTCGAACACAGCTTGGAATATCGAACAAGTATATTTACACCTATTCCCTCGGTATTTATAATCTCCTGTTTCGTTATGATTTGGAGAAAAACGAGTGGGACTGCATCTCTAGCCGTTTCTGGGGTCTCTGGGGCGCTGGTGTGGTGATTTCCGACGACTCCTACTTATTATGCTTTGGCACTATGAAACCCACCGACAAATTCTCCGAGCGGCTTGGTGTTTACGTTTTTGATATTCGCCAGCGTCAGTGGCTAGATGAACCGGTCGAGGGCCTCGATGATGCTCTTCCCGTTATCCCAGACACGTACGAGCCCTGGGAAAGGCACCTTTACCTCAACAAATTACCGCGCTTGTTCCAAATCGGAACCAAAAAATTTGCTTTCATTTGGGAGGAGCGTTTTGTTGAGGGTCAGGGTCTGCTTCATTGCCACAAGTTCACTATCAACCACATCCCCTGCAGCAGCAGCAGCAGCTCTCATCGAACCAACAACCAACCCACCTCCTTTGTTGCCCGAATAGTCTCAAGTGGATTCCTTACTCTGCAACGCACTGGATTACTTGGTTGCGCTGTAGGAATTGAATCTTATTCACGAGGCAAAGGAACAGTGGATCGTCTGCACCTGAGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

44.54

Weight (kDa)

6.47

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 855
AccBSI CCGCTC 1 cut(s) 742
AccII CGCG 1 cut(s) 880
AciI CCGC 5 cut(s) 139, 519, 528, 742, 878
AclWI GGATC 3 cut(s) 166, 482, 1149
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 3 cut(s) 221, 731, 905
AcuI CTGAAG 2 cut(s) 183, 380
AfaI GTAC 2 cut(s) 74, 839
AfiI CCNNNNNNNGG 6 cut(s) 339, 497, 528, 652, 800, 852
AflIII ACRYGT 1 cut(s) 834
AgeI ACCGGT 1 cut(s) 793
AgsI TTSAA 2 cut(s) 128, 1112
AjnI CCWGG 2 cut(s) 264, 845
AluBI AGCT 3 cut(s) 544, 1005, 1161
AluI AGCT 3 cut(s) 544, 1005, 1161
Alw26I GTCTC 4 cut(s) 452, 488, 662, 1057
AlwI GGATC 3 cut(s) 166, 482, 1149
AlwNI CAGNNNCTG 1 cut(s) 949
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 4 cut(s) 59, 140, 429, 802
ApeKI GCWGC 6 cut(s) 435, 990, 993, 996, 999, 1002
ApoI RAATTY 3 cut(s) 221, 731, 905
AsiGI ACCGGT 1 cut(s) 793
AspLEI GCGC 4 cut(s) 243, 668, 882, 1100
AspS9I GGNCC 4 cut(s) 60, 262, 355, 802
AsuHPI GGTGA 2 cut(s) 470, 688
AsuII TTCGAA 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 2 cut(s) 262, 355
BanI GGYRCC 1 cut(s) 855
BanII GRGCYC 1 cut(s) 846
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BauI CACGAG 1 cut(s) 1122
BbvI GCAGC 6 cut(s) 422, 1002, 1005, 1008, 1011, 1014
BccI CCATC 2 cut(s) 71, 125
BceAI ACGGC 3 cut(s) 152, 268, 630
BciT130I CCWGG 2 cut(s) 266, 847
BcoDI GTCTC 4 cut(s) 452, 488, 662, 1057
BfaI CTAG 4 cut(s) 209, 642, 785, 1162
BfmI CTRYAG 2 cut(s) 988, 1101
BfoI RGCGCY 1 cut(s) 669
BglII AGATCT 1 cut(s) 211
BisI GCNGC 8 cut(s) 140, 436, 743, 991, 994, 997, 1000, 1003
BlsI GCNGC 8 cut(s) 141, 437, 744, 992, 995, 998, 1001, 1004
Bme1390I CCNGG 2 cut(s) 266, 847
Bme18I GGWCC 2 cut(s) 262, 355
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 4 cut(s) 60, 262, 355, 802
BmiI GGNNCC 2 cut(s) 857, 898
BmrFI CCNGG 2 cut(s) 266, 847
BmsI GCATC 2 cut(s) 645, 802
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 1039
BsaAI YACGTR 1 cut(s) 837
BsaI GGTCTC 2 cut(s) 452, 662
BsaJI CCNNGG 5 cut(s) 143, 459, 580, 845, 846
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 2 cut(s) 719, 749
Bsc4I CCNNNNNNNGG 6 cut(s) 339, 497, 528, 652, 800, 852
Bse118I RCCGGY 1 cut(s) 793
Bse1I ACTGG 2 cut(s) 84, 1087
Bse3DI GCAATG 1 cut(s) 955
BseBI CCWGG 2 cut(s) 266, 847
BseDI CCNNGG 5 cut(s) 143, 459, 580, 845, 846
BseGI GGATG 1 cut(s) 981
BseLI CCNNNNNNNGG 6 cut(s) 339, 497, 528, 652, 800, 852
BseMI GCAATG 1 cut(s) 955
BseMII CTCAG 1 cut(s) 1145
BseNI ACTGG 2 cut(s) 84, 1087
BseRI GAGGAG 1 cut(s) 938
BseX3I CGGCCG 1 cut(s) 140
BseXI GCAGC 6 cut(s) 422, 1002, 1005, 1008, 1011, 1014
BsgI GTGCAG 1 cut(s) 1133
Bsh1236I CGCG 1 cut(s) 880
Bsh1285I CGRYCG 2 cut(s) 143, 798
BshFI GGCC 4 cut(s) 61, 142, 431, 804
BshNI GGYRCC 1 cut(s) 855
BshTI ACCGGT 1 cut(s) 793
BsiEI CGRYCG 2 cut(s) 143, 798
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 1 cut(s) 794
BsiWI CGTACG 1 cut(s) 837
BslFI GGGAC 4 cut(s) 38, 189, 477, 644
BslI CCNNNNNNNGG 6 cut(s) 339, 497, 528, 652, 800, 852
BsmAI GTCTC 4 cut(s) 452, 488, 662, 1057
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 4 cut(s) 38, 189, 477, 644
BsnI GGCC 4 cut(s) 61, 142, 431, 804
Bso31I GGTCTC 2 cut(s) 452, 662
BsoBI CYCGRG 1 cut(s) 100
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 846
Bsp143I GATC 4 cut(s) 158, 211, 487, 1141
BspACI CCGC 5 cut(s) 139, 519, 528, 742, 878
BspANI GGCC 4 cut(s) 61, 142, 431, 804
BspCNI CTCAG 1 cut(s) 1146
BspFNI CGCG 1 cut(s) 880
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 857, 898
BspMAI CTGCAG 1 cut(s) 992
BspPI GGATC 3 cut(s) 166, 482, 1149
BspQI GCTCTTC 1 cut(s) 822
BspT104I TTCGAA 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 855
BspTNI GGTCTC 2 cut(s) 452, 662
BsrBI CCGCTC 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 955
BsrFI RCCGGY 1 cut(s) 793
BsrI ACTGG 2 cut(s) 84, 1087
BssAI RCCGGY 1 cut(s) 793
BssECI CCNNGG 5 cut(s) 143, 459, 580, 845, 846
BssMI GATC 4 cut(s) 158, 211, 487, 1141
BssSI CACGAG 1 cut(s) 1122
BssT1I CCWWGG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 2 cut(s) 266, 847
Bst4CI ACNGT 3 cut(s) 446, 482, 1138
Bst6I CTCTTC 2 cut(s) 159, 822
BstBAI YACGTR 1 cut(s) 837
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 433, 773
BstDEI CTNAG 1 cut(s) 1154
BstENI CCTNNNNNAGG 1 cut(s) 850
BstF5I GGATG 1 cut(s) 981
BstFNI CGCG 1 cut(s) 880
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 4 cut(s) 243, 668, 882, 1100
BstKTI GATC 4 cut(s) 161, 214, 490, 1144
BstMAI GTCTC 4 cut(s) 452, 488, 662, 1057
BstMBI GATC 4 cut(s) 158, 211, 487, 1141
BstMCI CGRYCG 2 cut(s) 143, 798
BstMWI GCNNNNNNNGC 6 cut(s) 145, 642, 781, 996, 999, 1002
BstNI CCWGG 2 cut(s) 266, 847
BstNSI RCATGY 2 cut(s) 241, 528
BstSCI CCNGG 2 cut(s) 264, 845
BstSFI CTRYAG 2 cut(s) 988, 1101
BstUI CGCG 1 cut(s) 880
BstV1I GCAGC 6 cut(s) 422, 1002, 1005, 1008, 1011, 1014
BstX2I RGATCY 2 cut(s) 158, 211
BstYI RGATCY 2 cut(s) 158, 211
BstZI CGGCCG 1 cut(s) 140
BsuRI GGCC 4 cut(s) 61, 142, 431, 804
BtsCI GGATG 1 cut(s) 981
BtsIMutI CAGTG 4 cut(s) 160, 785, 1080, 1143
Cac8I GCNNGC 2 cut(s) 433, 773
CaiI CAGNNNCTG 1 cut(s) 949
CciI TCATGA 1 cut(s) 282
CfoI GCGC 4 cut(s) 243, 668, 882, 1100
Cfr10I RCCGGY 1 cut(s) 793
Cfr13I GGNCC 4 cut(s) 60, 262, 355, 802
CseI GACGC 1 cut(s) 764
Csp6I GTAC 2 cut(s) 73, 838
CspAI ACCGGT 1 cut(s) 793
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviAII CATG 3 cut(s) 238, 283, 525
CviQI GTAC 2 cut(s) 73, 838
DdeI CTNAG 1 cut(s) 1154
DpnI GATC 4 cut(s) 160, 213, 489, 1143
DpnII GATC 4 cut(s) 158, 211, 487, 1141
EaeI YGGCCR 1 cut(s) 140
EagI CGGCCG 1 cut(s) 140
Eam1104I CTCTTC 2 cut(s) 159, 822
EarI CTCTTC 2 cut(s) 159, 822
EclXI CGGCCG 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 846
Eco31I GGTCTC 2 cut(s) 452, 662
Eco32I GATATC 1 cut(s) 296
Eco47I GGWCC 2 cut(s) 262, 355
Eco52I CGGCCG 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 183, 380
Eco88I CYCGRG 1 cut(s) 100
EcoNI CCTNNNNNAGG 1 cut(s) 850
EcoO109I RGGNCCY 1 cut(s) 802
EcoRII CCWGG 2 cut(s) 264, 845
EcoRV GATATC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 846
ErhI CCWWGG 1 cut(s) 459
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 3 cut(s) 241, 286, 528
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 4 cut(s) 38, 189, 477, 644
FatI CATG 3 cut(s) 237, 282, 524
FauI CCCGC 2 cut(s) 521, 526
Fnu4HI GCNGC 8 cut(s) 140, 436, 743, 991, 994, 997, 1000, 1003
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 1 cut(s) 846
Fsp4HI GCNGC 8 cut(s) 140, 436, 743, 991, 994, 997, 1000, 1003
FspBI CTAG 4 cut(s) 209, 642, 785, 1162
GlaI GCGC 4 cut(s) 242, 667, 881, 1099
GluI GCNGC 8 cut(s) 140, 436, 743, 991, 994, 997, 1000, 1003
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 4 cut(s) 61, 142, 431, 804
HapII CCGG 1 cut(s) 794
HgaI GACGC 1 cut(s) 764
HhaI GCGC 4 cut(s) 243, 668, 882, 1100
Hin1II CATG 3 cut(s) 241, 286, 528
Hin6I GCGC 4 cut(s) 241, 666, 880, 1098
HinP1I GCGC 4 cut(s) 241, 666, 880, 1098
HinfI GANTC 6 cut(s) 269, 314, 422, 689, 1062, 1112
HpaII CCGG 1 cut(s) 794
HphI GGTGA 2 cut(s) 470, 688
Hpy166II GTNNAC 2 cut(s) 754, 969
Hpy188I TCNGA 6 cut(s) 163, 394, 511, 685, 739, 896
Hpy188III TCNNGA 5 cut(s) 218, 273, 283, 485, 1122
Hpy8I GTNNAC 2 cut(s) 754, 969
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 4 cut(s) 34, 254, 368, 423
HpyCH4III ACNGT 3 cut(s) 446, 482, 1138
HpyCH4IV ACGT 2 cut(s) 756, 836
HpyCH4V TGCA 5 cut(s) 438, 636, 990, 1075, 1150
HpyF10VI GCNNNNNNNGC 6 cut(s) 145, 642, 781, 996, 999, 1002
HpyF3I CTNAG 1 cut(s) 1154
HpySE526I ACGT 2 cut(s) 756, 836
Hsp92II CATG 3 cut(s) 241, 286, 528
HspAI GCGC 4 cut(s) 241, 666, 880, 1098
Kzo9I GATC 4 cut(s) 158, 211, 487, 1141
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 1 cut(s) 925
Lsp1109I GCAGC 6 cut(s) 422, 1002, 1005, 1008, 1011, 1014
LweI GCATC 2 cut(s) 645, 802
MaeI CTAG 4 cut(s) 209, 642, 785, 1162
MaeII ACGT 2 cut(s) 756, 836
MaeIII GTNAC 1 cut(s) 476
MalI GATC 4 cut(s) 160, 213, 489, 1143
MbiI CCGCTC 1 cut(s) 742
MboI GATC 4 cut(s) 158, 211, 487, 1141
MboII GAAGA 8 cut(s) 43, 46, 49, 140, 176, 190, 206, 809
MflI RGATCY 2 cut(s) 158, 211
MhlI GDGCHC 1 cut(s) 846
MluCI AATT 5 cut(s) 221, 731, 872, 905, 1107
MlyI GAGTC 3 cut(s) 263, 431, 683
MmeI TCCRAC 1 cut(s) 708
MspI CCGG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 266, 847
MvaI CCWGG 2 cut(s) 266, 847
MvnI CGCG 1 cut(s) 880
MwoI GCNNNNNNNGC 6 cut(s) 145, 642, 781, 996, 999, 1002
NdeII GATC 4 cut(s) 158, 211, 487, 1141
NlaIII CATG 3 cut(s) 241, 286, 528
NlaIV GGNNCC 2 cut(s) 857, 898
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 476
NspI RCATGY 2 cut(s) 241, 528
NspV TTCGAA 1 cut(s) 535
PagI TCATGA 1 cut(s) 282
PasI CCCWGGG 1 cut(s) 846
PciSI GCTCTTC 1 cut(s) 822
PcsI WCGNNNNNNNCGW 2 cut(s) 422, 804
PfeI GAWTC 3 cut(s) 314, 1062, 1112
Pfl23II CGTACG 1 cut(s) 837
PfoI TCCNGGA 1 cut(s) 264
PinAI ACCGGT 1 cut(s) 793
PkrI GCNGC 8 cut(s) 141, 437, 744, 992, 995, 998, 1001, 1004
PleI GAGTC 3 cut(s) 263, 430, 683
PpsI GAGTC 3 cut(s) 263, 430, 683
Ppu21I YACGTR 1 cut(s) 837
PsiI TTATAA 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 264, 845
PspGI CCWGG 2 cut(s) 264, 845
PspLI CGTACG 1 cut(s) 837
PspN4I GGNNCC 2 cut(s) 857, 898
PspPI GGNCC 4 cut(s) 60, 262, 355, 802
PstI CTGCAG 1 cut(s) 992
PstNI CAGNNNCTG 1 cut(s) 949
PsuI RGATCY 2 cut(s) 158, 211
RsaI GTAC 2 cut(s) 74, 839
RsaNI GTAC 2 cut(s) 73, 838
SapI GCTCTTC 1 cut(s) 822
SatI GCNGC 8 cut(s) 140, 436, 743, 991, 994, 997, 1000, 1003
Sau3AI GATC 4 cut(s) 158, 211, 487, 1141
Sau96I GGNCC 4 cut(s) 60, 262, 355, 802
SchI GAGTC 3 cut(s) 263, 431, 683
ScrFI CCNGG 2 cut(s) 266, 847
SduI GDGCHC 1 cut(s) 846
SfaNI GCATC 2 cut(s) 645, 802
SfcI CTRYAG 2 cut(s) 988, 1101
SfuI TTCGAA 1 cut(s) 535
SinI GGWCC 2 cut(s) 262, 355
SmlI CTYRAG 1 cut(s) 1054
SmoI CTYRAG 1 cut(s) 1054
Sse9I AATT 5 cut(s) 221, 731, 872, 905, 1107
SsiI CCGC 5 cut(s) 139, 519, 528, 742, 878
SspMI CTAG 4 cut(s) 209, 642, 785, 1162
StyD4I CCNGG 2 cut(s) 264, 845
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 3 cut(s) 446, 482, 1138
TaiI ACGT 2 cut(s) 759, 839
TaqI TCGA 6 cut(s) 486, 535, 554, 798, 807, 1012
TasI AATT 5 cut(s) 221, 731, 872, 905, 1107
TauI GCSGC 2 cut(s) 142, 745
TfiI GAWTC 3 cut(s) 314, 1062, 1112
TscAI CASTG 4 cut(s) 160, 785, 1087, 1143
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 6 cut(s) 435, 990, 993, 996, 999, 1002
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 6 cut(s) 271, 396, 731, 804, 904, 944
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 4 cut(s) 160, 785, 1087, 1143
VpaK11BI GGWCC 2 cut(s) 262, 355
XagI CCTNNNNNAGG 1 cut(s) 850
XapI RAATTY 3 cut(s) 221, 731, 905
XceI RCATGY 2 cut(s) 241, 528
XspI CTAG 4 cut(s) 209, 642, 785, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.