Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

11087315 .. 11088401

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027379

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATTGCCTCCAAACCGAAGCAGCGACGTCGTCAACAAGAGACAAGAATGCAGGGGACAGGCCCTTGTACGTACCTTCAGGCCTATTCCCGCGGAGGTATAGGGAAGAATCTCCAGCATTATTTGTTTAGTTATGATATGGAAGAGAAAAAGTGGGACTACTTCTTTAGAAATTTCTGGGGTGACTGGGCCACCGGAGTGGTGCTTGTGCTTTCCGAAGACTCCCACTTACTAGCGTATGGGTTTTTGATGGTGCTTGTGCATCCCATTGAATGGAAAAGGGAGAAGCGCGGTGTGTGGGTTTTTCATATTCGCCAGCGTCAATGGCTTGGCTTGATGAACCAGTTGATGAGGCGCTTCGGGTTATCCCAGACTGGGCCTTCCTATGAGGAATTGGATAGTGGTTCCATATACTACTTACCGCGCTTGTTCCAAGTTGGAATGCACAGATTTGCTTTGGTTTGGGAGGAATCAGATGAGAGTCATAAGCTTCATTGCCACAAATTCACATTGCAGGCTCCCACCTCTGCTGATCAACCACTCGTTGCTCGACAACTCTCAAATAAAGTCATTACTCTCAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

23.12

Weight (kDa)

9.54

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	273
AccII	CGCG	3 cut(s)	93, 291, 424
AciI	CCGC	4 cut(s)	91, 93, 291, 422
AcsI	RAATTY	2 cut(s)	172, 503
AcuI	CTGAAG	1 cut(s)	62
AcyI	GRCGYC	1 cut(s)	28
AfaI	GTAC	2 cut(s)	70, 74
AfiI	CCNNNNNNNGG	2 cut(s)	273, 375
AgsI	TTSAA	1 cut(s)	272
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
Alw26I	GTCTC	1 cut(s)	35
AoxI	GGCC	4 cut(s)	61, 81, 189, 377
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	172, 503
AspLEI	GCGC	3 cut(s)	291, 357, 426
AspS9I	GGNCC	3 cut(s)	62, 189, 377
AsuHPI	GGTGA	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BclI	TGATCA	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	62, 189, 377
BmiI	GGNNCC	2 cut(s)	406, 519
BmrI	ACTGGG	2 cut(s)	196, 384
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	2 cut(s)	196, 384
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 375
Bse1I	ACTGG	3 cut(s)	191, 343, 379
Bse3DI	GCAATG	2 cut(s)	493, 509
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	273, 375
BseMI	GCAATG	2 cut(s)	493, 509
BseNI	ACTGG	3 cut(s)	191, 343, 379
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	3 cut(s)	93, 291, 424
BshFI	GGCC	4 cut(s)	63, 83, 191, 379
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	70, 170
BslI	CCNNNNNNNGG	2 cut(s)	273, 375
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	70, 170
BsmI	GAATGC	2 cut(s)	54, 447
BsnI	GGCC	4 cut(s)	63, 83, 191, 379
Bsp143I	GATC	1 cut(s)	532
BspACI	CCGC	4 cut(s)	91, 93, 291, 422
BspANI	GGCC	4 cut(s)	63, 83, 191, 379
BspFNI	CGCG	3 cut(s)	93, 291, 424
BspLI	GGNNCC	2 cut(s)	406, 519
BsrDI	GCAATG	2 cut(s)	493, 509
BsrI	ACTGG	3 cut(s)	191, 343, 379
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	532
BssNI	GRCGYC	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	317, 516
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	3 cut(s)	93, 291, 424
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	3 cut(s)	291, 357, 426
BstKTI	GATC	1 cut(s)	535
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstSNI	TACGTA	1 cut(s)	72
BstUI	CGCG	3 cut(s)	93, 291, 424
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	4 cut(s)	63, 83, 191, 379
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	317, 516
CfoI	GCGC	3 cut(s)	291, 357, 426
Cfr13I	GGNCC	3 cut(s)	62, 189, 377
Cfr42I	CCGCGG	1 cut(s)	94
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	69, 73
CviJI	RGCY	8 cut(s)	63, 83, 191, 328, 333, 379, 490, 518
CviKI_1	RGCY	8 cut(s)	63, 83, 191, 328, 333, 379, 490, 518
CviQI	GTAC	2 cut(s)	69, 73
DpnI	GATC	1 cut(s)	534
DpnII	GATC	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Eco105I	TACGTA	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	62
FaiI	YATR	9 cut(s)	101, 135, 140, 240, 309, 387, 410, 412, 486
FaqI	GGGAC	2 cut(s)	70, 170
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	3 cut(s)	290, 356, 425
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	4 cut(s)	63, 83, 191, 379
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	3 cut(s)	291, 357, 426
Hin1I	GRCGYC	1 cut(s)	28
Hin6I	GCGC	3 cut(s)	289, 355, 424
HinP1I	GCGC	3 cut(s)	289, 355, 424
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	109, 221, 470, 481
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	217, 475
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	2 cut(s)	30, 33
HpyAV	CCTTC	2 cut(s)	86, 390
HpyCH4IV	ACGT	2 cut(s)	28, 71
HpyCH4V	TGCA	4 cut(s)	52, 262, 445, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpySE526I	ACGT	2 cut(s)	28, 71
Hsp92I	GRCGYC	1 cut(s)	28
HspAI	GCGC	3 cut(s)	289, 355, 424
Ksp22I	TGATCA	1 cut(s)	532
KspI	CCGCGG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	532
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	2 cut(s)	28, 71
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	534
MboI	GATC	1 cut(s)	532
MboII	GAAGA	3 cut(s)	118, 155, 230
MluCI	AATT	3 cut(s)	172, 392, 503
MlyI	GAGTC	2 cut(s)	215, 490
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	6 cut(s)	19, 89, 345, 382, 460, 535
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	195
Mva1269I	GAATGC	2 cut(s)	54, 447
MvnI	CGCG	3 cut(s)	93, 291, 424
MwoI	GCNNNNNNNGC	1 cut(s)	325
NdeII	GATC	1 cut(s)	532
NlaIV	GGNNCC	2 cut(s)	406, 519
NmuCI	GTSAC	1 cut(s)	182
OliI	CACNNNNGTG	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	83
PctI	GAATGC	2 cut(s)	54, 447
PfeI	GAWTC	2 cut(s)	109, 470
PflFI	GACNNNGTC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	2 cut(s)	215, 489
PpsI	GAGTC	2 cut(s)	215, 489
Ppu21I	YACGTR	1 cut(s)	72
PspN4I	GGNNCC	2 cut(s)	406, 519
PspPI	GGNCC	3 cut(s)	62, 189, 377
PsyI	GACNNNGTC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	70, 74
RsaNI	GTAC	2 cut(s)	69, 73
RseI	CAYNNNNRTG	1 cut(s)	197
SacII	CCGCGG	1 cut(s)	94
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	532
Sau96I	GGNCC	3 cut(s)	62, 189, 377
SchI	GAGTC	2 cut(s)	215, 490
SetI	ASST	6 cut(s)	31, 74, 78, 100, 492, 527
SfaNI	GCATC	1 cut(s)	271
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SmiMI	CAYNNNNRTG	1 cut(s)	197
SnaBI	TACGTA	1 cut(s)	72
Sse9I	AATT	3 cut(s)	172, 392, 503
SseBI	AGGCCT	1 cut(s)	83
SsiI	CCGC	4 cut(s)	91, 93, 291, 422
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	1 cut(s)	233
StuI	AGGCCT	1 cut(s)	83
TaiI	ACGT	2 cut(s)	31, 74
TaqI	TCGA	1 cut(s)	550
TasI	AATT	3 cut(s)	172, 392, 503
TfiI	GAWTC	2 cut(s)	109, 470
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	296, 353, 482
Tth111I	GACNNNGTC	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	273
XapI	RAATTY	2 cut(s)	172, 503
XspI	CTAG	1 cut(s)	233
ZraI	GACGTC	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.