Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Reverse (-)

45264356 .. 45264978

Gene Structure 623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG318500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAACCCATCGACGAACTCTCCGACCAGCTTGGTGTTTACATCTTTGATATTGTCCAGCGTCAGTGGCTAGATGAACCAGTCAAGGGCCTTAATGATGCTCTTCCCGTTATCCCAGACACGTACGAGTCCTGGGAAAGGCACCTTTACCTCGACCATTTACCGCGCTTGTTCCAAATAGGAACCAAAAGATTTGCTTTGGTTTGGGAGGAACTTTTTGTTGGCGGTCGGGGTCGGCTTCATTGCCACAAGTTCACTATAGACCATATCCCCTGCAGCAGCAGCAGCAGCTCCTCTCATCGAACCAACAACCAACCCACCTCCTTTGTTGCGCGAATAGTCTCAAGTGGATTCCTTACTCTGCAACGCGCCGGATTACTTGGTTGCGCTGTAGGATTTGAATCTTATTCACGAGGCAAAGGAATAGTGGATCATCTGCACCTGAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

17.03

Weight (kDa)

7.09

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccII	CGCG	3 cut(s)	166, 334, 369
AciI	CCGC	2 cut(s)	164, 225
AclWI	GGATC	1 cut(s)	438
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	86, 138
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	131
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	31, 291, 450
AluI	AGCT	3 cut(s)	31, 291, 450
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	5 cut(s)	276, 279, 282, 285, 288
AspLEI	GCGC	4 cut(s)	168, 334, 371, 389
AspS9I	GGNCC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	411
BbvI	GCAGC	5 cut(s)	288, 291, 294, 297, 300
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	71, 451
BfmI	CTRYAG	3 cut(s)	258, 274, 390
BisI	GCNGC	5 cut(s)	277, 280, 283, 286, 289
BlsI	GCNGC	5 cut(s)	278, 281, 284, 287, 290
Bme1390I	CCNGG	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	143, 184
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 138
Bse1I	ACTGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	241
Bse8I	GATNNNNATC	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	400
BseLI	CCNNNNNNNGG	2 cut(s)	86, 138
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	283
BseXI	GCAGC	5 cut(s)	288, 291, 294, 297, 300
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	3 cut(s)	166, 334, 369
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	372
BsiWI	CGTACG	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	86, 138
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	2 cut(s)	164, 225
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	3 cut(s)	166, 334, 369
BspLI	GGNNCC	2 cut(s)	143, 184
BspMAI	CTGCAG	1 cut(s)	278
BspPI	GGATC	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	430
BssSI	CACGAG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	108
BstBAI	YACGTR	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	443
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstFNI	CGCG	3 cut(s)	166, 334, 369
BstHHI	GCGC	4 cut(s)	168, 334, 371, 389
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	430
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 282, 285, 288
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	3 cut(s)	258, 274, 390
BstUI	CGCG	3 cut(s)	166, 334, 369
BstV1I	GCAGC	5 cut(s)	288, 291, 294, 297, 300
BsuRI	GGCC	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	71
CfoI	GCGC	4 cut(s)	168, 334, 371, 389
Cfr13I	GGNCC	1 cut(s)	88
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviJI	RGCY	6 cut(s)	31, 70, 90, 238, 291, 450
CviKI_1	RGCY	6 cut(s)	31, 70, 90, 238, 291, 450
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	131
FaiI	YATR	2 cut(s)	260, 267
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
Fnu4HI	GCNGC	5 cut(s)	277, 280, 283, 286, 289
Fsp4HI	GCNGC	5 cut(s)	277, 280, 283, 286, 289
FspBI	CTAG	2 cut(s)	71, 451
GlaI	GCGC	4 cut(s)	167, 333, 370, 388
GluI	GCNGC	5 cut(s)	277, 280, 283, 286, 289
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	4 cut(s)	168, 334, 371, 389
Hin6I	GCGC	4 cut(s)	166, 332, 369, 387
HinP1I	GCGC	4 cut(s)	166, 332, 369, 387
HinfI	GANTC	3 cut(s)	128, 351, 401
HpaII	CCGG	1 cut(s)	372
Hpy166II	GTNNAC	2 cut(s)	40, 255
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	411
Hpy8I	GTNNAC	2 cut(s)	40, 255
Hpy99I	CGWCG	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	276, 364, 439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 282, 285, 288
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	1 cut(s)	122
HspAI	GCGC	4 cut(s)	166, 332, 369, 387
Kzo9I	GATC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	41, 71, 93, 118, 129, 145, 286, 385
Lsp1109I	GCAGC	5 cut(s)	288, 291, 294, 297, 300
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	71, 451
MaeII	ACGT	1 cut(s)	122
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	5 cut(s)	161, 202, 304, 331, 407
MseI	TTAA	1 cut(s)	93
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	3 cut(s)	166, 334, 369
MwoI	GCNNNNNNNGC	4 cut(s)	67, 282, 285, 288
NdeII	GATC	1 cut(s)	430
NlaIV	GGNNCC	2 cut(s)	143, 184
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	351, 401
Pfl23II	CGTACG	1 cut(s)	123
PkrI	GCNGC	5 cut(s)	278, 281, 284, 287, 290
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspLI	CGTACG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	143, 184
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	5 cut(s)	277, 280, 283, 286, 289
Sau3AI	GATC	1 cut(s)	430
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	8 cut(s)	33, 125, 147, 153, 293, 323, 444, 452
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	3 cut(s)	258, 274, 390
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
SsiI	CCGC	2 cut(s)	164, 225
SspMI	CTAG	2 cut(s)	71, 451
StyD4I	CCNGG	1 cut(s)	131
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	12, 153, 301
TfiI	GAWTC	2 cut(s)	351, 401
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	5 cut(s)	276, 279, 282, 285, 288
TspDTI	ATGAA	3 cut(s)	17, 90, 230
TspRI	CASTG	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	71, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.