Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

55266773 .. 55267749

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATCCTGCTCGCCGCGTCACTACTGAGCTGCCTCAAATTGTTGAAGAATATGGTCACGTCCCACAGCCGCTTGCTATATCTGAGAACAAGATTTATGCCTATTCCCGCGGAGGTATAGGGAAGAATCTCCAGCATTATTTGTTTAGTTATGATATAGAGGAGAAAAAGTGGGACTGCCTCTTTAGAAATTTCTGGGGTGACTGGGCCACTGGAGTGGTGCTTGTGCTTTCCGAAGACTCCTACTTAATAGCGTATGGGTCGAGGCATCCCATTGAATGGAAGAGGGAGAAGCCCGGTGTGTGGGTTTTTGATATTCGCCGGCGTCAATGGCTGGATGAACCAGTTGAGGGCCTTGATGAGGCGCTTCCGGTTATCCCAGACTGGGCCTATGATTGGGATCGTGGTTACACATACGACTTACCACGCTTGTTCCAAGTTGGAACGCACAGGTTTGCTTTGGTTTGGGAGGAATCAGATGAGAGTTATAAGCTTCATTGCCACAAATTCACATTGCAGGCTCCCACCTCTGCTGATCAACCATTCGTTGCTCGACAACTCTCAAATAAAGTCATTACTCTTAATGGCGGCAACAACAAAAAACTCGGTTGCACCGCAGGATTGGAAACCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.54

Weight (kDa)

5.43

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccII	CGCG	2 cut(s)	18, 111
AciI	CCGC	6 cut(s)	16, 71, 109, 111, 588, 615
AclWI	GGATC	2 cut(s)	12, 408
AcsI	RAATTY	2 cut(s)	190, 506
AcyI	GRCGYC	1 cut(s)	325
AfiI	CCNNNNNNNGG	6 cut(s)	279, 303, 350, 361, 385, 396
AgsI	TTSAA	2 cut(s)	47, 278
AjiI	CACGTC	1 cut(s)	61
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	2 cut(s)	31, 493
AluI	AGCT	2 cut(s)	31, 493
AlwI	GGATC	2 cut(s)	12, 408
AoxI	GGCC	3 cut(s)	207, 352, 387
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	2 cut(s)	190, 506
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	3 cut(s)	207, 352, 387
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	18
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	368
BisI	GCNGC	4 cut(s)	16, 32, 71, 589
BlsI	GCNGC	4 cut(s)	17, 33, 72, 590
Bme1390I	CCNGG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	3 cut(s)	207, 352, 387
BmiI	GGNNCC	2 cut(s)	6, 522
BmrFI	CCNGG	1 cut(s)	297
BmrI	ACTGGG	2 cut(s)	214, 394
BmsI	GCATC	1 cut(s)	277
BmuI	ACTGGG	2 cut(s)	214, 394
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	2 cut(s)	116, 234
BpuMI	CCSGG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	6 cut(s)	279, 303, 350, 361, 385, 396
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	4 cut(s)	209, 217, 344, 389
Bse3DI	GCAATG	2 cut(s)	496, 512
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	268, 343
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	6 cut(s)	279, 303, 350, 361, 385, 396
BseMI	GCAATG	2 cut(s)	496, 512
BseMII	CTCAG	2 cut(s)	18, 75
BseNI	ACTGG	4 cut(s)	209, 217, 344, 389
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	18
Bsh1236I	CGCG	2 cut(s)	18, 111
BshFI	GGCC	3 cut(s)	209, 354, 389
BsiSI	CCGG	3 cut(s)	297, 322, 371
BslFI	GGGAC	2 cut(s)	47, 188
BslI	CCNNNNNNNGG	6 cut(s)	279, 303, 350, 361, 385, 396
BsmFI	GGGAC	2 cut(s)	47, 188
BsnI	GGCC	3 cut(s)	209, 354, 389
Bsp143I	GATC	3 cut(s)	4, 400, 535
BspACI	CCGC	6 cut(s)	16, 71, 109, 111, 588, 615
BspANI	GGCC	3 cut(s)	209, 354, 389
BspCNI	CTCAG	2 cut(s)	19, 76
BspFNI	CGCG	2 cut(s)	18, 111
BspLI	GGNNCC	2 cut(s)	6, 522
BspPI	GGATC	2 cut(s)	12, 408
BsrDI	GCAATG	2 cut(s)	496, 512
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	4 cut(s)	209, 217, 344, 389
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	4, 400, 535
BssNI	GRCGYC	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	325
BstC8I	GCNNGC	4 cut(s)	13, 75, 323, 519
BstDEI	CTNAG	2 cut(s)	27, 84
BstDSI	CCRYGG	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	268, 343
BstFNI	CGCG	2 cut(s)	18, 111
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	3 cut(s)	7, 403, 538
BstMBI	GATC	3 cut(s)	4, 400, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	2 cut(s)	18, 111
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	209, 354, 389
BtgI	CCRYGG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	268, 343
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	13, 75, 323, 519
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	3 cut(s)	207, 352, 387
Cfr42I	CCGCGG	1 cut(s)	112
CseI	GACGC	2 cut(s)	7, 314
CviJI	RGCY	9 cut(s)	31, 70, 209, 295, 334, 354, 389, 493, 521
CviKI_1	RGCY	9 cut(s)	31, 70, 209, 295, 334, 354, 389, 493, 521
DdeI	CTNAG	2 cut(s)	27, 84
DpnI	GATC	3 cut(s)	6, 402, 537
DpnII	GATC	3 cut(s)	4, 400, 535
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	352
FaqI	GGGAC	2 cut(s)	47, 188
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	4 cut(s)	16, 32, 71, 589
FokI	GGATG	2 cut(s)	255, 350
Fsp4HI	GCNGC	4 cut(s)	16, 32, 71, 589
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	4 cut(s)	16, 32, 71, 589
GsuI	CTGGAG	2 cut(s)	116, 234
HaeII	RGCGCY	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	209, 354, 389
HapII	CCGG	3 cut(s)	297, 322, 371
HgaI	GACGC	2 cut(s)	7, 314
HhaI	GCGC	1 cut(s)	367
Hin1I	GRCGYC	1 cut(s)	325
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	3 cut(s)	127, 239, 473
HpaII	CCGG	3 cut(s)	297, 322, 371
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	85, 235, 478
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	517, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	2 cut(s)	27, 84
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	325
HspAI	GCGC	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	321
KroNI	GCCGGC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	535
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	4, 400, 535
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	4 cut(s)	19, 56, 200, 407
MalI	GATC	3 cut(s)	6, 402, 537
MboI	GATC	3 cut(s)	4, 400, 535
MboII	GAAGA	4 cut(s)	59, 136, 248, 295
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	39, 190, 506
MlyI	GAGTC	1 cut(s)	233
MmeI	TCCRAC	1 cut(s)	421
MreI	CGCCGGCG	1 cut(s)	321
MroNI	GCCGGC	1 cut(s)	321
MseI	TTAA	2 cut(s)	248, 582
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	3 cut(s)	297, 322, 371
MspR9I	CCNGG	1 cut(s)	297
MvnI	CGCG	2 cut(s)	18, 111
MwoI	GCNNNNNNNGC	1 cut(s)	331
NaeI	GCCGGC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	3 cut(s)	4, 400, 535
NgoMIV	GCCGGC	1 cut(s)	321
NlaIV	GGNNCC	2 cut(s)	6, 522
NmuCI	GTSAC	3 cut(s)	19, 56, 200
OliI	CACNNNNGTG	1 cut(s)	215
PdiI	GCCGGC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	127, 473
PflMI	CCANNNNNTGG	1 cut(s)	279
PkrI	GCNGC	4 cut(s)	17, 33, 72, 590
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PsiI	TTATAA	1 cut(s)	489
PspN4I	GGNNCC	2 cut(s)	6, 522
PspPI	GGNCC	3 cut(s)	207, 352, 387
PsuI	RGATCY	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	215
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	248, 582
SatI	GCNGC	4 cut(s)	16, 32, 71, 589
Sau3AI	GATC	3 cut(s)	4, 400, 535
Sau96I	GGNCC	3 cut(s)	207, 352, 387
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	33, 63, 118, 455, 495, 530
SfaNI	GCATC	1 cut(s)	277
Sfr303I	CCGCGG	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	321
SgrBI	CCGCGG	1 cut(s)	112
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	39, 190, 506
SsiI	CCGC	6 cut(s)	16, 71, 109, 111, 588, 615
StyD4I	CCNGG	1 cut(s)	295
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	263, 553
TasI	AATT	3 cut(s)	39, 190, 506
TauI	GCSGC	3 cut(s)	18, 73, 591
TfiI	GAWTC	2 cut(s)	127, 473
Tru1I	TTAA	2 cut(s)	248, 582
Tru9I	TTAA	2 cut(s)	248, 582
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	3 cut(s)	19, 56, 200
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	3 cut(s)	19, 56, 200
TspDTI	ATGAA	2 cut(s)	354, 485
TspRI	CASTG	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	190, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.