FvH4_7g21730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001936
Physical Location & Seq
Forward (+)
17307443 .. 17309181
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21730.t1

Sequence Viewer

Length: 1062 bp
ATGATAACCACAACGAGGGACAGACCCTTACACATTAGGGTTCGCGAGGGCAAATCGTCGATATGGTTTGTAATCGAGGATAAACGCCAGGAACAACAGCAAGAAGATGATGATGAGATAGTCTTCCGTCAACTTGATTTTCCCGAGTTAGGTTACCAGCGTTTTTTAGCCAGCCTTGTGGTCCTCAACTCCAAATTATACCTCATCGGTGGTACTAAAATCAATTTGAATAAACCTACCTGTCCGGTACCTGTTGGGGAACCCGTCAGGGAATACGAGTACTTGAACTTGCAAGAGAGGAGGCCGCGGTGGCGCCGCCAGCCCTTCCGTCGGTTTCTTTGCAATCAGCATCTTGCTTCCAGCAAAGACGGTTTGATCTATGGCTTGGGACCTCAGTCTCACGTTATCGATCCTGCTCTCCGCTTTGGTGTCATCCACACTGACCTGCCTAAAATCATTGATGAATATAGCCATTCCCCACAGCCGCTTGCTATTTCTAAGAACAAGATTTATGCCTATTCCCGCGGAGGCTACCCTAATTTCCAGCATTATTTGTTTAGTTATGATATGGAAGACAAAAAGTGGGATTGCATCTTCAAAAATTTCTGGGGTGACTGGGCCACTGGAGTAGTGCTTTCCGGAGACTCCTACTTAATAGCGTATGGCTCGAGACATCCCATTGAATGGAAGAGGGACAAGCCTGGTGTGTGGGTTTTTGATATTTGCCGGCGTCAATGGCTCGATGAACCAGTTAAGGGCCTTGATGAGGCACTTCCGGTTATCCCAGACTGGGCTTATGGGGATTGGGAGCGCGGTTATATATACTACCTACCACGCATGTTCGAAATTGGAACGCAAAGGTTTGCTTTGCTTTGGGAGGAATCAGATGATGAGAGTTATAAGCTTCATTGCCACAAATTCATATTGCAAGCTCCTACCTCTGCTGATGAACCGTTTGTTGCTCAACCACTCTCAAATAAAGTCATTACCCTTAATGGCGGCAACAACAAAATACTTGGTTGCACTGTTGGATTGGAAACTGAACATGGAAGAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

41.26

Weight (kDa)

6.1

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 453
Acc65I GGTACC 1 cut(s) 247
AccB1I GGYRCC 2 cut(s) 247, 312
AccB7I CCANNNNNTGG 1 cut(s) 684
AccII CGCG 4 cut(s) 45, 307, 525, 813
AccIII TCCGGA 1 cut(s) 638
AciI CCGC 9 cut(s) 305, 307, 316, 421, 485, 523, 525, 813, 999
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 2 cut(s) 601, 917
AcyI GRCGYC 2 cut(s) 313, 730
AfaI GTAC 3 cut(s) 214, 249, 281
AfiI CCNNNNNNNGG 7 cut(s) 15, 149, 330, 684, 755, 766, 790
AgsI TTSAA 4 cut(s) 229, 286, 598, 683
AjnI CCWGG 2 cut(s) 87, 700
AluBI AGCT 2 cut(s) 904, 932
AluI AGCT 2 cut(s) 904, 932
Alw26I GTCTC 3 cut(s) 402, 636, 664
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 2 cut(s) 143, 667
Aor13HI TCCGGA 1 cut(s) 638
AoxI GGCC 3 cut(s) 302, 618, 757
ApoI RAATTY 2 cut(s) 601, 917
Asp718I GGTACC 1 cut(s) 247
AspLEI GCGC 2 cut(s) 315, 813
AspS9I GGNCC 4 cut(s) 181, 389, 618, 757
AsuHPI GGTGA 1 cut(s) 623
AsuII TTCGAA 1 cut(s) 843
AvaI CYCGRG 2 cut(s) 143, 667
AvaII GGWCC 2 cut(s) 181, 389
BanI GGYRCC 2 cut(s) 247, 312
BbsI GAAGAC 2 cut(s) 115, 579
BciT130I CCWGG 2 cut(s) 89, 702
BcoDI GTCTC 3 cut(s) 402, 636, 664
BfoI RGCGCY 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 453
BglI GCCNNNNNGGC 1 cut(s) 310
BisI GCNGC 4 cut(s) 305, 316, 485, 1000
BlsI GCNGC 4 cut(s) 306, 317, 486, 1001
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 2 cut(s) 89, 702
Bme18I GGWCC 2 cut(s) 181, 389
BmeT110I CYCGRG 2 cut(s) 143, 667
BmgT120I GGNCC 4 cut(s) 181, 389, 618, 757
BmiI GGNNCC 4 cut(s) 249, 261, 314, 390
BmrFI CCNGG 2 cut(s) 89, 702
BmrI ACTGGG 2 cut(s) 625, 799
BmsI GCATC 2 cut(s) 358, 600
BmuI ACTGGG 2 cut(s) 625, 799
BoxI GACNNNNGTC 1 cut(s) 394
BpiI GAAGAC 2 cut(s) 115, 579
BpmI CTGGAG 1 cut(s) 645
Bpu14I TTCGAA 1 cut(s) 843
Bsa29I ATCGAT 1 cut(s) 408
BsaHI GRCGYC 2 cut(s) 313, 730
BsaJI CCNNGG 2 cut(s) 305, 523
BsaWI WCCGGW 3 cut(s) 244, 638, 775
Bsc4I CCNNNNNNNGG 7 cut(s) 15, 149, 330, 684, 755, 766, 790
Bse118I RCCGGY 1 cut(s) 726
Bse1I ACTGG 4 cut(s) 620, 628, 749, 794
Bse3DI GCAATG 1 cut(s) 907
BseAI TCCGGA 1 cut(s) 638
BseBI CCWGG 2 cut(s) 89, 702
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 305, 523
BseGI GGATG 2 cut(s) 432, 673
BseLI CCNNNNNNNGG 7 cut(s) 15, 149, 330, 684, 755, 766, 790
BseMI GCAATG 1 cut(s) 907
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 4 cut(s) 620, 628, 749, 794
BseRI GAGGAG 1 cut(s) 313
Bsh1236I CGCG 4 cut(s) 45, 307, 525, 813
BshFI GGCC 3 cut(s) 304, 620, 759
BshNI GGYRCC 2 cut(s) 247, 312
BshVI ATCGAT 1 cut(s) 408
BsiHKCI CYCGRG 2 cut(s) 143, 667
BsiSI CCGG 4 cut(s) 245, 639, 727, 776
BslFI GGGAC 3 cut(s) 32, 402, 707
BslI CCNNNNNNNGG 7 cut(s) 15, 149, 330, 684, 755, 766, 790
BsmAI GTCTC 3 cut(s) 402, 636, 664
BsmFI GGGAC 3 cut(s) 32, 402, 707
BsnI GGCC 3 cut(s) 304, 620, 759
BsoBI CYCGRG 2 cut(s) 143, 667
Bsp119I TTCGAA 1 cut(s) 843
Bsp13I TCCGGA 1 cut(s) 638
Bsp143I GATC 2 cut(s) 375, 409
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 9 cut(s) 305, 307, 316, 421, 485, 523, 525, 813, 999
BspANI GGCC 3 cut(s) 304, 620, 759
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 408
BspEI TCCGGA 1 cut(s) 638
BspFNI CGCG 4 cut(s) 45, 307, 525, 813
BspLI GGNNCC 4 cut(s) 249, 261, 314, 390
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 843
BspT107I GGYRCC 2 cut(s) 247, 312
BsrDI GCAATG 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 726
BsrI ACTGG 4 cut(s) 620, 628, 749, 794
BssAI RCCGGY 1 cut(s) 726
BssECI CCNNGG 2 cut(s) 305, 523
BssMI GATC 2 cut(s) 375, 409
BssNI GRCGYC 2 cut(s) 313, 730
Bst2UI CCWGG 2 cut(s) 89, 702
Bst4CI ACNGT 3 cut(s) 371, 954, 1027
Bst6I CTCTTC 2 cut(s) 683, 1045
BstACI GRCGYC 2 cut(s) 313, 730
BstBI TTCGAA 1 cut(s) 843
BstC8I GCNNGC 5 cut(s) 172, 320, 489, 728, 930
BstDEI CTNAG 2 cut(s) 393, 498
BstDSI CCRYGG 2 cut(s) 305, 523
BstEII GGTNACC 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 764
BstF5I GGATG 2 cut(s) 432, 673
BstFNI CGCG 4 cut(s) 45, 307, 525, 813
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 2 cut(s) 315, 813
BstKTI GATC 2 cut(s) 378, 412
BstMAI GTCTC 3 cut(s) 402, 636, 664
BstMBI GATC 2 cut(s) 375, 409
BstMWI GCNNNNNNNGC 3 cut(s) 310, 319, 736
BstNI CCWGG 2 cut(s) 89, 702
BstNSI RCATGY 1 cut(s) 841
BstPAI GACNNNNGTC 1 cut(s) 394
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 87, 700
BstUI CGCG 4 cut(s) 45, 307, 525, 813
BstV2I GAAGAC 2 cut(s) 115, 579
BstXI CCANNNNNNTGG 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 408
BsuRI GGCC 3 cut(s) 304, 620, 759
BsuTUI ATCGAT 1 cut(s) 408
BtgI CCRYGG 2 cut(s) 305, 523
BtsCI GGATG 2 cut(s) 432, 673
BtsIMutI CAGTG 3 cut(s) 438, 621, 1023
BtuMI TCGCGA 1 cut(s) 45
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 5 cut(s) 172, 320, 489, 728, 930
CfoI GCGC 2 cut(s) 315, 813
Cfr10I RCCGGY 1 cut(s) 726
Cfr13I GGNCC 4 cut(s) 181, 389, 618, 757
Cfr42I CCGCGG 2 cut(s) 308, 526
ClaI ATCGAT 1 cut(s) 408
CseI GACGC 1 cut(s) 719
Csp6I GTAC 3 cut(s) 213, 248, 280
CviAII CATG 2 cut(s) 838, 1046
CviQI GTAC 3 cut(s) 213, 248, 280
DdeI CTNAG 2 cut(s) 393, 498
DinI GGCGCC 1 cut(s) 314
DpnI GATC 2 cut(s) 377, 411
DpnII GATC 2 cut(s) 375, 409
Eam1104I CTCTTC 2 cut(s) 683, 1045
EarI CTCTTC 2 cut(s) 683, 1045
Eco47I GGWCC 2 cut(s) 181, 389
Eco88I CYCGRG 2 cut(s) 143, 667
Eco91I GGTNACC 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 764
EcoO109I RGGNCCY 2 cut(s) 389, 757
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 87, 700
EgeI GGCGCC 1 cut(s) 314
EheI GGCGCC 1 cut(s) 314
FaeI CATG 2 cut(s) 841, 1049
FalI AAGNNNNNCTT 2 cut(s) 850, 882
FaqI GGGAC 3 cut(s) 32, 402, 707
FatI CATG 2 cut(s) 837, 1045
FauI CCCGC 1 cut(s) 530
Fnu4HI GCNGC 4 cut(s) 305, 316, 485, 1000
FokI GGATG 2 cut(s) 419, 660
Fsp4HI GCNGC 4 cut(s) 305, 316, 485, 1000
GlaI GCGC 2 cut(s) 314, 812
GluI GCNGC 4 cut(s) 305, 316, 485, 1000
GsuI CTGGAG 1 cut(s) 645
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 3 cut(s) 304, 620, 759
HapII CCGG 4 cut(s) 245, 639, 727, 776
HgaI GACGC 1 cut(s) 719
HhaI GCGC 2 cut(s) 315, 813
Hin1I GRCGYC 2 cut(s) 313, 730
Hin1II CATG 2 cut(s) 841, 1049
Hin6I GCGC 2 cut(s) 313, 811
HinP1I GCGC 2 cut(s) 313, 811
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 902
HinfI GANTC 2 cut(s) 644, 881
HpaII CCGG 4 cut(s) 245, 639, 727, 776
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 886
Hpy188III TCNNGA 4 cut(s) 44, 143, 639, 669
Hpy8I GTNNAC 1 cut(s) 131
Hpy99I CGWCG 2 cut(s) 61, 333
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 3 cut(s) 371, 954, 1027
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 5 cut(s) 292, 342, 591, 928, 1023
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 319, 736
HpyF3I CTNAG 2 cut(s) 393, 498
HpySE526I ACGT 1 cut(s) 402
Hsp92I GRCGYC 2 cut(s) 313, 730
Hsp92II CATG 2 cut(s) 841, 1049
HspAI GCGC 2 cut(s) 313, 811
KasI GGCGCC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 638
KpnI GGTACC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 726
KroNI GCCGGC 1 cut(s) 728
KspI CCGCGG 2 cut(s) 308, 526
Kzo9I GATC 2 cut(s) 375, 409
LmnI GCTCC 2 cut(s) 808, 937
LweI GCATC 2 cut(s) 358, 600
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 152, 611
MalI GATC 2 cut(s) 377, 411
MboI GATC 2 cut(s) 375, 409
MboII GAAGA 6 cut(s) 115, 116, 584, 586, 700, 1062
MluCI AATT 6 cut(s) 194, 223, 538, 601, 846, 917
Mly113I GGCGCC 1 cut(s) 313
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 1 cut(s) 1009
MroI TCCGGA 1 cut(s) 638
MroNI GCCGGC 1 cut(s) 726
MseI TTAA 3 cut(s) 653, 753, 993
MspA1I CMGCKG 2 cut(s) 307, 525
MspI CCGG 4 cut(s) 245, 639, 727, 776
MspR9I CCNGG 2 cut(s) 89, 702
MvaI CCWGG 2 cut(s) 89, 702
MvnI CGCG 4 cut(s) 45, 307, 525, 813
MwoI GCNNNNNNNGC 3 cut(s) 310, 319, 736
NaeI GCCGGC 1 cut(s) 728
NarI GGCGCC 1 cut(s) 313
NdeII GATC 2 cut(s) 375, 409
NgoMIV GCCGGC 1 cut(s) 726
NlaIII CATG 2 cut(s) 841, 1049
NlaIV GGNNCC 4 cut(s) 249, 261, 314, 390
NmuCI GTSAC 1 cut(s) 611
NruI TCGCGA 1 cut(s) 45
NspI RCATGY 1 cut(s) 841
NspV TTCGAA 1 cut(s) 843
PaeR7I CTCGAG 1 cut(s) 667
PdiI GCCGGC 1 cut(s) 728
PfeI GAWTC 1 cut(s) 881
PflMI CCANNNNNTGG 1 cut(s) 684
PkrI GCNGC 4 cut(s) 306, 317, 486, 1001
PleI GAGTC 1 cut(s) 638
PluTI GGCGCC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 389
PshAI GACNNNNGTC 1 cut(s) 394
PsiI TTATAA 1 cut(s) 900
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 87, 700
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 87, 700
PspN4I GGNNCC 4 cut(s) 249, 261, 314, 390
PspPI GGNCC 4 cut(s) 181, 389, 618, 757
PspPPI RGGWCCY 1 cut(s) 389
RruI TCGCGA 1 cut(s) 45
RsaI GTAC 3 cut(s) 214, 249, 281
RsaNI GTAC 3 cut(s) 213, 248, 280
SacII CCGCGG 2 cut(s) 308, 526
SaqAI TTAA 3 cut(s) 653, 753, 993
SatI GCNGC 4 cut(s) 305, 316, 485, 1000
Sau3AI GATC 2 cut(s) 375, 409
Sau96I GGNCC 4 cut(s) 181, 389, 618, 757
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 2 cut(s) 89, 702
SfaNI GCATC 2 cut(s) 358, 600
SfoI GGCGCC 1 cut(s) 314
Sfr274I CTCGAG 1 cut(s) 667
Sfr303I CCGCGG 2 cut(s) 308, 526
SfuI TTCGAA 1 cut(s) 843
SgrBI CCGCGG 2 cut(s) 308, 526
SinI GGWCC 2 cut(s) 181, 389
SlaI CTCGAG 1 cut(s) 667
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 6 cut(s) 194, 223, 538, 601, 846, 917
SsiI CCGC 9 cut(s) 305, 307, 316, 421, 485, 523, 525, 813, 999
SspDI GGCGCC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 87, 700
TaaI ACNGT 3 cut(s) 371, 954, 1027
TaiI ACGT 1 cut(s) 405
TaqI TCGA 6 cut(s) 59, 75, 408, 668, 741, 843
TasI AATT 6 cut(s) 194, 223, 538, 601, 846, 917
TatI WGTACW 1 cut(s) 279
TauI GCSGC 4 cut(s) 307, 318, 487, 1002
TfiI GAWTC 1 cut(s) 881
Tru1I TTAA 3 cut(s) 653, 753, 993
Tru9I TTAA 3 cut(s) 653, 753, 993
TscAI CASTG 3 cut(s) 445, 628, 1030
TseFI GTSAC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 5 cut(s) 477, 759, 896, 910, 963
TspGWI ACGGA 2 cut(s) 116, 317
TspRI CASTG 3 cut(s) 445, 628, 1030
Van91I CCANNNNNTGG 1 cut(s) 684
VpaK11BI GGWCC 2 cut(s) 181, 389
XagI CCTNNNNNAGG 1 cut(s) 764
XapI RAATTY 2 cut(s) 601, 917
XceI RCATGY 1 cut(s) 841
XhoI CTCGAG 1 cut(s) 667
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.