Rroxscaffold_1G00032750

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
47028838 .. 47031086
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032750.1

Sequence Viewer

Length: 1134 bp
ATGCCGACCCCCCACAGAGGAGTCATGTTGAAAACAATGAAGAAATTAGTCTCTAGATTGGAACGAAGCCGATCAAAGATGCACAACAATGCATCAACCAAAGCAACGGAAGTCAAGGCAGACGACAACTCGGGGTCGAGTTTATGGTTCGTCATTGAAGATGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGGTGATGATGATGATAATAAGGTAATCTTCCGTCCCCTAGATCTTCCCGAATTTGATGATGATAACATGCGCGTTCCTCACAGCGTTGTGGTCCTGGACTCCCGATTATTCATGATTAGTGGATATCAATGTAGAAAGCGAGATTCCTCTGGTGTGAAATTCTATATTGGGTATGATTACTTGGACCTGAAACCCTCCTACGAAGGCAAGGAATGGCGTTCTGAACAAGGGGTTTCATTCCCTTTGCAAGAGTCGTTGGCCTGCTGCAAAGACGGGCTCATCTATACCTTGGGACAGGAATGTTGTCACCGTCTCGATCCTCGCTCTGGTGTCTGTTCGGAGTTTCCCGCCACATGCGGGTTTCGAACACAGCTTGGAATATCGAACAAGTATATTTACACCTATTCCCTCGGTATTTATAACCTCCTGTTTCGTTATGATTTGGAGAAAAACGAGTGGGACTGCATCTCTAGCCGTTTCTGGGGTATCTGGGGCCCTGGTGTGGTGATTTCCGACGACTCCTACTTATTATGCTTTGGCACTATGAAACCCACCGACAAATTGTCCGAGCAGCTTGGTGTTTACGTTTTTGATATTCGCCAGCGTCAGTGGCTAGATGAACCGGTCGAGGGCCTTGATGATGCTCTTCCCGTTATCCCAGACACGTACGAGCCCTGGGAAAGGCACCTTTACCTCAACGATTTACCGCGCTTGTTCCAAATCGGAACCAAAAAATTTGCTTTCATTTGGGAGGAACGTTTTGTTGAGGGTCAGGGTCTGCTTCATTGCCACAAGTTCACTATCAACCACATCCCCTGCAGCAGCTCTCATCGAACCAACAACCAACCCACCTCCTTTGTTGCCCGAATAGTCTCAAGTGGATTCCTTAATCTGCCACGCACTGGATTACTTGGTTGCGCTGTAGGAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

43.21

Weight (kDa)

6.03

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
AccB1I GGYRCC 1 cut(s) 885
AccB7I CCANNNNNTGG 1 cut(s) 1103
AccII CGCG 2 cut(s) 273, 910
AciI CCGC 4 cut(s) 169, 549, 558, 908
AclI AACGTT 1 cut(s) 958
AclWI GGATC 2 cut(s) 196, 512
AcoI YGGCCR 1 cut(s) 170
AcsI RAATTY 3 cut(s) 251, 359, 935
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 869
AfiI CCNNNNNNNGG 8 cut(s) 17, 527, 558, 682, 703, 830, 882, 1103
AflIII ACRYGT 1 cut(s) 864
AgeI ACCGGT 1 cut(s) 823
AgsI TTSAA 2 cut(s) 31, 158
AhdI GACNNNNNGTC 1 cut(s) 763
AjnI CCWGG 3 cut(s) 294, 697, 875
AluBI AGCT 3 cut(s) 574, 775, 1026
AluI AGCT 3 cut(s) 574, 775, 1026
Alw26I GTCTC 3 cut(s) 55, 518, 1078
AlwI GGATC 2 cut(s) 196, 512
AlwNI CAGNNNCTG 1 cut(s) 979
Ama87I CYCGRG 1 cut(s) 130
AoxI GGCC 4 cut(s) 170, 459, 694, 832
ApaI GGGCCC 1 cut(s) 698
ApeKI GCWGC 4 cut(s) 465, 772, 1020, 1023
ApoI RAATTY 3 cut(s) 251, 359, 935
AsiGI ACCGGT 1 cut(s) 823
AspLEI GCGC 3 cut(s) 273, 912, 1121
AspS9I GGNCC 5 cut(s) 292, 385, 694, 695, 832
AsuHPI GGTGA 3 cut(s) 215, 500, 718
AsuII TTCGAA 1 cut(s) 565
AvaI CYCGRG 1 cut(s) 130
AvaII GGWCC 2 cut(s) 292, 385
BaeGI GKGCMC 1 cut(s) 698
BanI GGYRCC 1 cut(s) 885
BanII GRGCYC 3 cut(s) 480, 698, 876
BbvI GCAGC 4 cut(s) 452, 784, 1032, 1035
BccI CCATC 1 cut(s) 155
BceAI ACGGC 2 cut(s) 182, 660
BciT130I CCWGG 3 cut(s) 296, 699, 877
BcoDI GTCTC 3 cut(s) 55, 518, 1078
BfaI CTAG 4 cut(s) 54, 239, 672, 815
BfmI CTRYAG 2 cut(s) 1018, 1122
BglII AGATCT 1 cut(s) 241
BisI GCNGC 5 cut(s) 170, 466, 773, 1021, 1024
BlsI GCNGC 5 cut(s) 171, 467, 774, 1022, 1025
Bme1390I CCNGG 3 cut(s) 296, 699, 877
Bme18I GGWCC 2 cut(s) 292, 385
BmeRI GACNNNNNGTC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 5 cut(s) 292, 385, 694, 695, 832
BmiI GGNNCC 4 cut(s) 695, 696, 887, 928
BmrFI CCNGG 3 cut(s) 296, 699, 877
BmsI GCATC 4 cut(s) 69, 101, 675, 832
Bpu14I TTCGAA 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 1060
BsaAI YACGTR 1 cut(s) 867
BsaJI CCNNGG 6 cut(s) 173, 489, 610, 697, 875, 876
BsaWI WCCGGW 1 cut(s) 823
Bsc4I CCNNNNNNNGG 8 cut(s) 17, 527, 558, 682, 703, 830, 882, 1103
Bse118I RCCGGY 1 cut(s) 823
Bse1I ACTGG 1 cut(s) 1108
Bse3DI GCAATG 1 cut(s) 985
BseBI CCWGG 3 cut(s) 296, 699, 877
BseDI CCNNGG 6 cut(s) 173, 489, 610, 697, 875, 876
BseGI GGATG 1 cut(s) 1011
BseLI CCNNNNNNNGG 8 cut(s) 17, 527, 558, 682, 703, 830, 882, 1103
BseMI GCAATG 1 cut(s) 985
BseNI ACTGG 1 cut(s) 1108
BseRI GAGGAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 698
BseX3I CGGCCG 1 cut(s) 170
BseXI GCAGC 4 cut(s) 452, 784, 1032, 1035
Bsh1236I CGCG 2 cut(s) 273, 910
Bsh1285I CGRYCG 2 cut(s) 173, 828
BshFI GGCC 4 cut(s) 172, 461, 696, 834
BshNI GGYRCC 1 cut(s) 885
BshTI ACCGGT 1 cut(s) 823
BsiEI CGRYCG 2 cut(s) 173, 828
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 1 cut(s) 824
BsiWI CGTACG 1 cut(s) 867
BslFI GGGAC 3 cut(s) 219, 507, 674
BslI CCNNNNNNNGG 8 cut(s) 17, 527, 558, 682, 703, 830, 882, 1103
BsmAI GTCTC 3 cut(s) 55, 518, 1078
BsmBI CGTCTC 1 cut(s) 518
BsmFI GGGAC 3 cut(s) 219, 507, 674
BsnI GGCC 4 cut(s) 172, 461, 696, 834
BsoBI CYCGRG 1 cut(s) 130
Bsp119I TTCGAA 1 cut(s) 565
Bsp120I GGGCCC 1 cut(s) 694
Bsp1286I GDGCHC 3 cut(s) 480, 698, 876
Bsp143I GATC 4 cut(s) 71, 188, 241, 517
BspACI CCGC 4 cut(s) 169, 549, 558, 908
BspANI GGCC 4 cut(s) 172, 461, 696, 834
BspFNI CGCG 2 cut(s) 273, 910
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 4 cut(s) 695, 696, 887, 928
BspMAI CTGCAG 1 cut(s) 1022
BspPI GGATC 2 cut(s) 196, 512
BspQI GCTCTTC 1 cut(s) 852
BspT104I TTCGAA 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 885
BsrDI GCAATG 1 cut(s) 985
BsrFI RCCGGY 1 cut(s) 823
BsrI ACTGG 1 cut(s) 1108
BssAI RCCGGY 1 cut(s) 823
BssECI CCNNGG 6 cut(s) 173, 489, 610, 697, 875, 876
BssMI GATC 4 cut(s) 71, 188, 241, 517
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 3 cut(s) 296, 699, 877
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 2 cut(s) 189, 852
BstBAI YACGTR 1 cut(s) 867
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 463, 803
BstENI CCTNNNNNAGG 1 cut(s) 880
BstF5I GGATG 1 cut(s) 1011
BstFNI CGCG 2 cut(s) 273, 910
BstHHI GCGC 3 cut(s) 273, 912, 1121
BstKTI GATC 4 cut(s) 74, 191, 244, 520
BstMAI GTCTC 3 cut(s) 55, 518, 1078
BstMBI GATC 4 cut(s) 71, 188, 241, 517
BstMCI CGRYCG 2 cut(s) 173, 828
BstMWI GCNNNNNNNGC 3 cut(s) 175, 672, 811
BstNI CCWGG 3 cut(s) 296, 699, 877
BstNSI RCATGY 2 cut(s) 271, 558
BstSCI CCNGG 3 cut(s) 294, 697, 875
BstSFI CTRYAG 2 cut(s) 1018, 1122
BstSLI GKGCMC 1 cut(s) 698
BstUI CGCG 2 cut(s) 273, 910
BstV1I GCAGC 4 cut(s) 452, 784, 1032, 1035
BstX2I RGATCY 2 cut(s) 188, 241
BstYI RGATCY 2 cut(s) 188, 241
BstZI CGGCCG 1 cut(s) 170
BsuRI GGCC 4 cut(s) 172, 461, 696, 834
BtsCI GGATG 1 cut(s) 1011
BtsIMutI CAGTG 3 cut(s) 190, 815, 1101
Cac8I GCNNGC 2 cut(s) 463, 803
CaiI CAGNNNCTG 1 cut(s) 979
CciI TCATGA 1 cut(s) 312
CfoI GCGC 3 cut(s) 273, 912, 1121
Cfr10I RCCGGY 1 cut(s) 823
Cfr13I GGNCC 5 cut(s) 292, 385, 694, 695, 832
CseI GACGC 1 cut(s) 794
Csp6I GTAC 1 cut(s) 868
CspAI ACCGGT 1 cut(s) 823
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviAII CATG 4 cut(s) 25, 268, 313, 555
CviQI GTAC 1 cut(s) 868
DpnI GATC 4 cut(s) 73, 190, 243, 519
DpnII GATC 4 cut(s) 71, 188, 241, 517
DriI GACNNNNNGTC 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 170
EagI CGGCCG 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 189, 852
Eam1105I GACNNNNNGTC 1 cut(s) 763
EarI CTCTTC 2 cut(s) 189, 852
EclXI CGGCCG 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 3 cut(s) 480, 698, 876
Eco32I GATATC 1 cut(s) 326
Eco47I GGWCC 2 cut(s) 292, 385
Eco52I CGGCCG 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 880
EcoO109I RGGNCCY 3 cut(s) 694, 695, 832
EcoRII CCWGG 3 cut(s) 294, 697, 875
EcoRV GATATC 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 3 cut(s) 480, 698, 876
ErhI CCWWGG 1 cut(s) 489
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 4 cut(s) 28, 271, 316, 558
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 3 cut(s) 219, 507, 674
FatI CATG 4 cut(s) 24, 267, 312, 554
FauI CCCGC 2 cut(s) 551, 556
Fnu4HI GCNGC 5 cut(s) 170, 466, 773, 1021, 1024
FokI GGATG 1 cut(s) 998
FriOI GRGCYC 3 cut(s) 480, 698, 876
Fsp4HI GCNGC 5 cut(s) 170, 466, 773, 1021, 1024
FspBI CTAG 4 cut(s) 54, 239, 672, 815
GlaI GCGC 3 cut(s) 272, 911, 1120
GluI GCNGC 5 cut(s) 170, 466, 773, 1021, 1024
HaeIII GGCC 4 cut(s) 172, 461, 696, 834
HapII CCGG 1 cut(s) 824
HgaI GACGC 1 cut(s) 794
HhaI GCGC 3 cut(s) 273, 912, 1121
Hin1II CATG 4 cut(s) 28, 271, 316, 558
Hin6I GCGC 3 cut(s) 271, 910, 1119
HinP1I GCGC 3 cut(s) 271, 910, 1119
HinfI GANTC 6 cut(s) 21, 299, 344, 452, 719, 1083
HpaII CCGG 1 cut(s) 824
HphI GGTGA 3 cut(s) 215, 500, 718
Hpy166II GTNNAC 2 cut(s) 784, 999
Hpy188I TCNGA 6 cut(s) 193, 424, 541, 715, 769, 926
Hpy188III TCNNGA 5 cut(s) 54, 248, 303, 313, 515
Hpy8I GTNNAC 2 cut(s) 784, 999
Hpy99I CGWCG 1 cut(s) 719
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 3 cut(s) 786, 866, 958
HpyCH4V TGCA 6 cut(s) 82, 92, 448, 468, 666, 1020
HpyF10VI GCNNNNNNNGC 3 cut(s) 175, 672, 811
HpySE526I ACGT 3 cut(s) 786, 866, 958
Hsp92II CATG 4 cut(s) 28, 271, 316, 558
HspAI GCGC 3 cut(s) 271, 910, 1119
Kzo9I GATC 4 cut(s) 71, 188, 241, 517
LguI GCTCTTC 1 cut(s) 852
Lsp1109I GCAGC 4 cut(s) 452, 784, 1032, 1035
LweI GCATC 4 cut(s) 69, 101, 675, 832
MaeI CTAG 4 cut(s) 54, 239, 672, 815
MaeII ACGT 3 cut(s) 786, 866, 958
MaeIII GTNAC 1 cut(s) 506
MalI GATC 4 cut(s) 73, 190, 243, 519
MboI GATC 4 cut(s) 71, 188, 241, 517
MboII GAAGA 6 cut(s) 52, 170, 206, 220, 236, 839
MflI RGATCY 2 cut(s) 188, 241
MhlI GDGCHC 3 cut(s) 480, 698, 876
MluCI AATT 5 cut(s) 44, 251, 359, 761, 935
MlyI GAGTC 4 cut(s) 30, 293, 461, 713
MmeI TCCRAC 1 cut(s) 738
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 1 cut(s) 1089
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 3 cut(s) 296, 699, 877
MvaI CCWGG 3 cut(s) 296, 699, 877
MvnI CGCG 2 cut(s) 273, 910
MwoI GCNNNNNNNGC 3 cut(s) 175, 672, 811
NdeII GATC 4 cut(s) 71, 188, 241, 517
NlaIII CATG 4 cut(s) 28, 271, 316, 558
NlaIV GGNNCC 4 cut(s) 695, 696, 887, 928
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 506
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 2 cut(s) 271, 558
NspV TTCGAA 1 cut(s) 565
PagI TCATGA 1 cut(s) 312
PasI CCCWGGG 1 cut(s) 876
PciSI GCTCTTC 1 cut(s) 852
PfeI GAWTC 2 cut(s) 344, 1083
Pfl23II CGTACG 1 cut(s) 867
PflMI CCANNNNNTGG 1 cut(s) 1103
PfoI TCCNGGA 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 823
PkrI GCNGC 5 cut(s) 171, 467, 774, 1022, 1025
PleI GAGTC 4 cut(s) 29, 293, 460, 713
PpsI GAGTC 4 cut(s) 29, 293, 460, 713
Ppu21I YACGTR 1 cut(s) 867
PsiI TTATAA 1 cut(s) 621
Psp1406I AACGTT 1 cut(s) 958
Psp6I CCWGG 3 cut(s) 294, 697, 875
PspGI CCWGG 3 cut(s) 294, 697, 875
PspLI CGTACG 1 cut(s) 867
PspN4I GGNNCC 4 cut(s) 695, 696, 887, 928
PspOMI GGGCCC 1 cut(s) 694
PspPI GGNCC 5 cut(s) 292, 385, 694, 695, 832
PstI CTGCAG 1 cut(s) 1022
PstNI CAGNNNCTG 1 cut(s) 979
PsuI RGATCY 2 cut(s) 188, 241
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 852
SaqAI TTAA 1 cut(s) 1089
SatI GCNGC 5 cut(s) 170, 466, 773, 1021, 1024
Sau3AI GATC 4 cut(s) 71, 188, 241, 517
Sau96I GGNCC 5 cut(s) 292, 385, 694, 695, 832
SchI GAGTC 4 cut(s) 30, 293, 461, 713
ScrFI CCNGG 3 cut(s) 296, 699, 877
SduI GDGCHC 3 cut(s) 480, 698, 876
SfaNI GCATC 4 cut(s) 69, 101, 675, 832
SfcI CTRYAG 2 cut(s) 1018, 1122
SfuI TTCGAA 1 cut(s) 565
SinI GGWCC 2 cut(s) 292, 385
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 1075
SmoI CTYRAG 1 cut(s) 1075
Sse9I AATT 5 cut(s) 44, 251, 359, 761, 935
SsiI CCGC 4 cut(s) 169, 549, 558, 908
SspMI CTAG 4 cut(s) 54, 239, 672, 815
StyD4I CCNGG 3 cut(s) 294, 697, 875
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 3 cut(s) 789, 869, 961
TaqI TCGA 6 cut(s) 137, 516, 565, 584, 828, 1033
TasI AATT 5 cut(s) 44, 251, 359, 761, 935
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 2 cut(s) 344, 1083
Tru1I TTAA 1 cut(s) 1089
Tru9I TTAA 1 cut(s) 1089
TscAI CASTG 3 cut(s) 190, 815, 1108
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 4 cut(s) 465, 772, 1020, 1023
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 7 cut(s) 53, 301, 426, 761, 834, 934, 974
TspGWI ACGGA 2 cut(s) 122, 221
TspRI CASTG 3 cut(s) 190, 815, 1108
Van91I CCANNNNNTGG 1 cut(s) 1103
VpaK11BI GGWCC 2 cut(s) 292, 385
XagI CCTNNNNNAGG 1 cut(s) 880
XapI RAATTY 3 cut(s) 251, 359, 935
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 2 cut(s) 271, 558
XspI CTAG 4 cut(s) 54, 239, 672, 815
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.