Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Reverse (-)

43104883 .. 43105257

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG295300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGTCAAGGCATCCCATTGAATGGAAGAGGGAGAAGCCCGGTGTGTGGGTTTTTGATATTCGCCGGCGTCAATGGCTTGATCGATGAACCAGTTGAGGGCCTTGAGCCCTTGATGAGGCGCTTCCGGTTATCCCAGACTGGGCCTATGAGGAATTGGATAGTGGTTACATATACTACTTACCGCGCTGGAATGCACAGATTTGCTTTGGTTTGGGAGGAATCAGATGAGAGTTATAAGCTTCATTGCCACAAATTCACATTGCAGGCTCCCACCTCTGCTGATCAACCATTCGTTGCTCGACAACTCTCAAATAAAGTCATTACTCTTAATGGCGGCAACAACAAATTACTTGGTTGCAACGCAGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.75

Weight (kDa)

9.25

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AccB7I	CCANNNNNTGG	1 cut(s)	23
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	184, 336
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	5 cut(s)	23, 47, 98, 117, 141
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
AoxI	GGCC	2 cut(s)	100, 143
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	123, 188
AspS9I	GGNCC	2 cut(s)	100, 143
AsuC2I	CCSGG	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	100, 143
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	41
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	5 cut(s)	23, 47, 98, 117, 141
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	92, 145
Bse3DI	GCAATG	2 cut(s)	244, 260
BseCI	ATCGAT	1 cut(s)	84
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	5 cut(s)	23, 47, 98, 117, 141
BseMI	GCAATG	2 cut(s)	244, 260
BseNI	ACTGG	2 cut(s)	92, 145
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	102, 145
BshVI	ATCGAT	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	41, 66, 127
BslI	CCNNNNNNNGG	5 cut(s)	23, 47, 98, 117, 141
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	102, 145
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	81, 283
BspACI	CCGC	2 cut(s)	184, 336
BspANI	GGCC	2 cut(s)	102, 145
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	244, 260
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	92, 145
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	2 cut(s)	81, 283
BssNI	GRCGYC	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	67, 267
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 188
BstKTI	GATC	2 cut(s)	84, 286
BstMBI	GATC	2 cut(s)	81, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	102, 145
BsuTUI	ATCGAT	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	67, 267
CfoI	GCGC	2 cut(s)	123, 188
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	100, 143
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	58
CviJI	RGCY	7 cut(s)	39, 78, 102, 109, 145, 241, 269
CviKI_1	RGCY	7 cut(s)	39, 78, 102, 109, 145, 241, 269
DpnI	GATC	2 cut(s)	83, 285
DpnII	GATC	2 cut(s)	81, 283
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	111
FaiI	YATR	4 cut(s)	149, 172, 174, 237
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	337
GlaI	GCGC	2 cut(s)	122, 187
GluI	GCNGC	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	102, 145
HapII	CCGG	3 cut(s)	41, 66, 127
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	2 cut(s)	123, 188
Hin1I	GRCGYC	1 cut(s)	69
Hin6I	GCGC	2 cut(s)	121, 186
HinP1I	GCGC	2 cut(s)	121, 186
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	3 cut(s)	41, 66, 127
Hpy188I	TCNGA	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	196, 265, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	69
HspAI	GCGC	2 cut(s)	121, 186
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	81, 283
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	9 cut(s)	54, 79, 105, 126, 140, 149, 174, 251, 351
LweI	GCATC	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	83, 285
MboI	GATC	2 cut(s)	81, 283
MboII	GAAGA	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	154, 254, 347
MnlI	CCTC	6 cut(s)	23, 91, 111, 144, 211, 286
MreI	CGCCGGCG	1 cut(s)	65
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	1 cut(s)	330
MspI	CCGG	3 cut(s)	41, 66, 127
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	198
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	75
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	81, 283
NgoMIV	GCCGGC	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	198
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	338
PsiI	TTATAA	1 cut(s)	237
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	100, 143
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	81, 283
Sau96I	GGNCC	2 cut(s)	100, 143
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	2 cut(s)	243, 278
SfaNI	GCATC	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	154, 254, 347
SsiI	CCGC	2 cut(s)	184, 336
StyD4I	CCNGG	1 cut(s)	39
TaqI	TCGA	2 cut(s)	84, 301
TasI	AATT	3 cut(s)	154, 254, 347
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	102, 233
Van91I	CCANNNNNTGG	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.