Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Reverse (-)

57489499 .. 57490630

Gene Structure 1132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATCTGACGAGATTGATGACGATGATAAGAAAGCGAGATTGCTCTGGTGTGGAACCCTACATTGGGTATGATTACTTGGACCTGAAACCCTCCTATGTAGCCAAGGAATGGCGTTCTGAACAAGGGGTTTCATTCCCTTCGCAACAGTCGGTGGCCTGCTACAAAGACGGTCTCATCTACACCTTGGGACATGGAGGATGTCACCGTCTCGATCCTCGCACTGGTGTCCGTTCGGAGTTTCCCGCCACATGCGGGTTTCGAGTACAGCTTGGAATGTCGAACAAGTATATTTACACCTATTCCCTTGGTATTTATAATCACCTGTCTCGTTATGATTTGGAGAAAAACGAGTTTGACTGCATCTCTAGCAGTTTCTGGGGTCTCTGGGGCCCCGGAGTGGTAATTTCCGGTGACTCCTACTTATTATGCTTTGGCACTATGAAACCCACCGAAAGATTCTCCGGGCCGCCTGGTGTTTACGTTTTTGATATTCGCCAGCGTCAGTGGCTAGATGAACCAGTTAAGGGCCTTGATGATGCTCTCCCCGTTATCCCAGACACGTACGAGCCCTTGGAAAGGCACCTTTACCTCTGTGATTTACCGCGCGTGTTCCAAATCGGAACCAAAAGATTTGCTCTGGTTTGGGAGGAACTTTCTGTGAAAGATGATGATTGTCGGCTTCATTGCCACAAGTTCACTATCGACCACATCCCCTGCAGCAGTAGCTCTCATCAAACCAACAATCAACCCACCTCCTTTGTTGCTCGAATAGTCTCTAATGGAGTCCTTACTCTGAAAGACGCCGGATTACTTGGTTGCACTGTAGGAATTGAATCTTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.98

Weight (kDa)

6.06

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	582
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccII	CGCG	2 cut(s)	607, 609
AciI	CCGC	4 cut(s)	246, 255, 470, 605
AclWI	GGATC	2 cut(s)	12, 209
AcyI	GRCGYC	1 cut(s)	804
AfaI	GTAC	2 cut(s)	267, 566
AfiI	CCNNNNNNNGG	8 cut(s)	65, 66, 111, 224, 255, 400, 527, 579
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	1 cut(s)	836
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	2 cut(s)	271, 729
AluI	AGCT	2 cut(s)	271, 729
Alw26I	GTCTC	5 cut(s)	179, 215, 333, 389, 781
AlwI	GGATC	2 cut(s)	12, 209
AlwNI	CAGNNNCTG	1 cut(s)	378
AoxI	GGCC	4 cut(s)	156, 391, 467, 529
ApaI	GGGCCC	1 cut(s)	395
ApeKI	GCWGC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	5 cut(s)	82, 391, 392, 467, 529
AsuC2I	CCSGG	2 cut(s)	396, 466
AsuHPI	GGTGA	3 cut(s)	197, 314, 425
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	2 cut(s)	395, 573
BbvI	GCAGC	1 cut(s)	732
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	2 cut(s)	396, 466
BcoDI	GTCTC	5 cut(s)	179, 215, 333, 389, 781
BfaI	CTAG	2 cut(s)	369, 512
BfmI	CTRYAG	2 cut(s)	718, 825
BisI	GCNGC	2 cut(s)	470, 721
BlsI	GCNGC	2 cut(s)	471, 722
Bme1390I	CCNGG	3 cut(s)	396, 466, 474
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	5 cut(s)	82, 391, 392, 467, 529
BmiI	GGNNCC	6 cut(s)	57, 392, 393, 394, 584, 625
BmrFI	CCNGG	3 cut(s)	396, 466, 474
BmsI	GCATC	2 cut(s)	372, 529
BpuMI	CCSGG	2 cut(s)	396, 466
BsaAI	YACGTR	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	804
BsaI	GGTCTC	2 cut(s)	179, 389
BsaJI	CCNNGG	5 cut(s)	105, 186, 307, 394, 573
BsaWI	WCCGGW	1 cut(s)	410
Bsc4I	CCNNNNNNNGG	8 cut(s)	65, 66, 111, 224, 255, 400, 527, 579
Bse1I	ACTGG	2 cut(s)	229, 521
Bse3DI	GCAATG	1 cut(s)	685
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	5 cut(s)	105, 186, 307, 394, 573
BseGI	GGATG	2 cut(s)	206, 711
BseLI	CCNNNNNNNGG	8 cut(s)	65, 66, 111, 224, 255, 400, 527, 579
BseMI	GCAATG	1 cut(s)	685
BseNI	ACTGG	2 cut(s)	229, 521
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	732
Bsh1236I	CGCG	2 cut(s)	607, 609
BshFI	GGCC	4 cut(s)	158, 393, 469, 531
BshNI	GGYRCC	1 cut(s)	582
BsiSI	CCGG	4 cut(s)	396, 411, 465, 807
BsiWI	CGTACG	1 cut(s)	564
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	8 cut(s)	65, 66, 111, 224, 255, 400, 527, 579
BsmAI	GTCTC	5 cut(s)	179, 215, 333, 389, 781
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	158, 393, 469, 531
Bso31I	GGTCTC	2 cut(s)	179, 389
Bsp120I	GGGCCC	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	395, 573
Bsp143I	GATC	2 cut(s)	4, 214
BspACI	CCGC	4 cut(s)	246, 255, 470, 605
BspANI	GGCC	4 cut(s)	158, 393, 469, 531
BspFNI	CGCG	2 cut(s)	607, 609
BspHI	TCATGA	1 cut(s)	845
BspLI	GGNNCC	6 cut(s)	57, 392, 393, 394, 584, 625
BspMAI	CTGCAG	1 cut(s)	722
BspPI	GGATC	2 cut(s)	12, 209
BspT107I	GGYRCC	1 cut(s)	582
BspTNI	GGTCTC	2 cut(s)	179, 389
BsrDI	GCAATG	1 cut(s)	685
BsrI	ACTGG	2 cut(s)	229, 521
BssECI	CCNNGG	5 cut(s)	105, 186, 307, 394, 573
BssMI	GATC	2 cut(s)	4, 214
BssNI	GRCGYC	1 cut(s)	804
BssT1I	CCWWGG	4 cut(s)	105, 186, 307, 573
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	4 cut(s)	150, 173, 209, 826
BstACI	GRCGYC	1 cut(s)	804
BstBAI	YACGTR	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	160, 500
BstENI	CCTNNNNNAGG	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	206, 711
BstFNI	CGCG	2 cut(s)	607, 609
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	2 cut(s)	7, 217
BstMAI	GTCTC	5 cut(s)	179, 215, 333, 389, 781
BstMBI	GATC	2 cut(s)	4, 214
BstMWI	GCNNNNNNNGC	3 cut(s)	369, 508, 726
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	3 cut(s)	394, 464, 472
BstSFI	CTRYAG	2 cut(s)	718, 825
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	2 cut(s)	607, 609
BstV1I	GCAGC	1 cut(s)	732
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	4 cut(s)	158, 393, 469, 531
BtsCI	GGATG	2 cut(s)	206, 711
BtsIMutI	CAGTG	3 cut(s)	222, 512, 822
Cac8I	GCNNGC	2 cut(s)	160, 500
CaiI	CAGNNNCTG	1 cut(s)	378
CciI	TCATGA	1 cut(s)	845
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	5 cut(s)	82, 391, 392, 467, 529
CseI	GACGC	2 cut(s)	491, 812
Csp6I	GTAC	2 cut(s)	266, 565
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
CviAII	CATG	3 cut(s)	194, 252, 846
CviQI	GTAC	2 cut(s)	266, 565
DpnI	GATC	2 cut(s)	6, 216
DpnII	GATC	2 cut(s)	4, 214
Eco130I	CCWWGG	4 cut(s)	105, 186, 307, 573
Eco24I	GRGCYC	2 cut(s)	395, 573
Eco31I	GGTCTC	2 cut(s)	179, 389
Eco47I	GGWCC	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	577
EcoO109I	RGGNCCY	3 cut(s)	391, 392, 529
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	4 cut(s)	105, 186, 307, 573
EcoT38I	GRGCYC	2 cut(s)	395, 573
ErhI	CCWWGG	4 cut(s)	105, 186, 307, 573
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	3 cut(s)	197, 255, 849
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	3 cut(s)	193, 251, 845
FauI	CCCGC	2 cut(s)	248, 253
Fnu4HI	GCNGC	2 cut(s)	470, 721
FokI	GGATG	2 cut(s)	213, 698
FriOI	GRGCYC	2 cut(s)	395, 573
Fsp4HI	GCNGC	2 cut(s)	470, 721
FspBI	CTAG	2 cut(s)	369, 512
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	2 cut(s)	470, 721
HaeIII	GGCC	4 cut(s)	158, 393, 469, 531
HapII	CCGG	4 cut(s)	396, 411, 465, 807
HgaI	GACGC	2 cut(s)	491, 812
HhaI	GCGC	1 cut(s)	609
Hin1I	GRCGYC	1 cut(s)	804
Hin1II	CATG	3 cut(s)	197, 255, 849
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HinfI	GANTC	4 cut(s)	416, 459, 786, 836
HpaII	CCGG	4 cut(s)	396, 411, 465, 807
HphI	GGTGA	3 cut(s)	197, 314, 425
Hpy166II	GTNNAC	2 cut(s)	481, 699
Hpy188I	TCNGA	5 cut(s)	9, 121, 238, 623, 798
Hpy188III	TCNNGA	2 cut(s)	212, 846
Hpy8I	GTNNAC	2 cut(s)	481, 699
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	4 cut(s)	150, 173, 209, 826
HpyCH4IV	ACGT	2 cut(s)	483, 563
HpyCH4V	TGCA	3 cut(s)	363, 720, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	369, 508, 726
HpySE526I	ACGT	2 cut(s)	483, 563
Hsp92I	GRCGYC	1 cut(s)	804
Hsp92II	CATG	3 cut(s)	197, 255, 849
HspAI	GCGC	1 cut(s)	607
Kzo9I	GATC	2 cut(s)	4, 214
Lsp1109I	GCAGC	1 cut(s)	732
LweI	GCATC	2 cut(s)	372, 529
MaeI	CTAG	2 cut(s)	369, 512
MaeII	ACGT	2 cut(s)	483, 563
MaeIII	GTNAC	2 cut(s)	203, 413
MalI	GATC	2 cut(s)	6, 216
MboI	GATC	2 cut(s)	4, 214
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	395, 573
MluCI	AATT	2 cut(s)	405, 831
MlyI	GAGTC	2 cut(s)	410, 795
MnlI	CCTC	6 cut(s)	103, 191, 228, 602, 643, 766
MseI	TTAA	1 cut(s)	525
MspI	CCGG	4 cut(s)	396, 411, 465, 807
MspR9I	CCNGG	3 cut(s)	396, 466, 474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	2 cut(s)	607, 609
MwoI	GCNNNNNNNGC	3 cut(s)	369, 508, 726
NciI	CCSGG	2 cut(s)	396, 466
NdeII	GATC	2 cut(s)	4, 214
NlaIII	CATG	3 cut(s)	197, 255, 849
NlaIV	GGNNCC	6 cut(s)	57, 392, 393, 394, 584, 625
NmuCI	GTSAC	2 cut(s)	203, 413
NspI	RCATGY	1 cut(s)	255
PagI	TCATGA	1 cut(s)	845
PfeI	GAWTC	2 cut(s)	459, 836
Pfl23II	CGTACG	1 cut(s)	564
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	471, 722
PleI	GAGTC	2 cut(s)	410, 794
PpsI	GAGTC	2 cut(s)	410, 794
Ppu21I	YACGTR	1 cut(s)	564
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspLI	CGTACG	1 cut(s)	564
PspN4I	GGNNCC	6 cut(s)	57, 392, 393, 394, 584, 625
PspOMI	GGGCCC	1 cut(s)	391
PspPI	GGNCC	5 cut(s)	82, 391, 392, 467, 529
PstI	CTGCAG	1 cut(s)	722
PstNI	CAGNNNCTG	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	267, 566
RsaNI	GTAC	2 cut(s)	266, 565
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	2 cut(s)	470, 721
Sau3AI	GATC	2 cut(s)	4, 214
Sau96I	GGNCC	5 cut(s)	82, 391, 392, 467, 529
SchI	GAGTC	2 cut(s)	410, 795
ScrFI	CCNGG	3 cut(s)	396, 466, 474
SduI	GDGCHC	2 cut(s)	395, 573
SfaNI	GCATC	2 cut(s)	372, 529
SfcI	CTRYAG	2 cut(s)	718, 825
SinI	GGWCC	1 cut(s)	82
Sse9I	AATT	2 cut(s)	405, 831
SsiI	CCGC	4 cut(s)	246, 255, 470, 605
SspMI	CTAG	2 cut(s)	369, 512
StyD4I	CCNGG	3 cut(s)	394, 464, 472
StyI	CCWWGG	4 cut(s)	105, 186, 307, 573
TaaI	ACNGT	4 cut(s)	150, 173, 209, 826
TaiI	ACGT	2 cut(s)	486, 566
TaqI	TCGA	5 cut(s)	213, 262, 281, 705, 769
TasI	AATT	2 cut(s)	405, 831
TatI	WGTACW	1 cut(s)	265
TauI	GCSGC	1 cut(s)	472
TfiI	GAWTC	2 cut(s)	459, 836
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	3 cut(s)	229, 512, 829
TseFI	GTSAC	2 cut(s)	203, 413
TseI	GCWGC	1 cut(s)	720
Tsp45I	GTSAC	2 cut(s)	203, 413
TspDTI	ATGAA	5 cut(s)	123, 458, 531, 674, 834
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	229, 512, 829
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	82
XagI	CCTNNNNNAGG	1 cut(s)	577
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	2 cut(s)	369, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.