Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

9020202 .. 9022909

Gene Structure 2708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGAAAGAAAAACAAAACAAGGGACAAGAAGAAGAAGGTTGCTTGGGACAGGCCCATCTACCTGTACCAACAGGTCAAGGCAGACGGCAACTCGGTGTCGTCTTTATGGTTCGTCATTGAAGATGGACGGCAGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGATGATGATAATAAGGCCAGGAATGGCGTTCTGTACAAGGGGTTTCATTCCCTTAGCAAGAGTCGTTGGCCTGCTGCAAAGACGGTCTCATCTATACCTTGGGACAGCAATGTTGTCACCGTCTCGATCCTCGCTCTGGTGTCCGTTCGGAGTTTCCCGCCACATGCAGACACGTACGAGCACTGGGAAAGGCACCTTTACCTCGACCATTTACCGCGCTTGTTCCAAATCGGAACCAAAAGATTTGCTTTGGTTTGGGAGGAACTTTTTGTTGGCTGTCGGGGTCGGCTTCATTGCCACAAGTTCACTATCGACCACATCCCCTGCAGCAGCAGCAGCAGCAGCAGCTCCTCTCATCGAACCAACAACCAACCCACCTCCTTTGTTGGTCGAATAGTCTCAAGTGGATTCCTTACTCTGCAACGCGCCGGATTACTTGGTTGCGCTGTAGGAATTGAATCTTATTCACGAGGCAAAGGAACAGTGGATCATCTGCACCTGAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.41

Weight (kDa)

9.66

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	360
AccII	CGCG	2 cut(s)	385, 594
AciI	CCGC	2 cut(s)	326, 383
AclWI	GGATC	3 cut(s)	160, 289, 663
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	3 cut(s)	68, 203, 344
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	2 cut(s)	122, 626
AjnI	CCWGG	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	2 cut(s)	516, 675
AluI	AGCT	2 cut(s)	516, 675
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	3 cut(s)	259, 295, 571
AlwI	GGATC	3 cut(s)	160, 289, 663
AoxI	GGCC	3 cut(s)	53, 183, 236
ApeKI	GCWGC	9 cut(s)	133, 242, 495, 498, 501, 504, 507, 510, 513
AspLEI	GCGC	3 cut(s)	387, 596, 614
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	636
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	9 cut(s)	145, 229, 507, 510, 513, 516, 519, 522, 525
BccI	CCATC	2 cut(s)	65, 119
BceAI	ACGGC	2 cut(s)	103, 146
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	3 cut(s)	259, 295, 571
BfaI	CTAG	1 cut(s)	676
BfmI	CTRYAG	2 cut(s)	493, 615
BisI	GCNGC	9 cut(s)	134, 243, 496, 499, 502, 505, 508, 511, 514
BlsI	GCNGC	9 cut(s)	135, 244, 497, 500, 503, 506, 509, 512, 515
Bme1390I	CCNGG	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	362, 403
BmrFI	CCNGG	1 cut(s)	187
BmrI	ACTGGG	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	137, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	2 cut(s)	283, 460
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	137, 266
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	283, 460
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	508
BseXI	GCAGC	9 cut(s)	145, 229, 507, 510, 513, 516, 519, 522, 525
BsgI	GTGCAG	1 cut(s)	647
Bsh1236I	CGCG	2 cut(s)	385, 594
BshFI	GGCC	3 cut(s)	55, 185, 238
BshNI	GGYRCC	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	597
BsiWI	CGTACG	1 cut(s)	342
BslFI	GGGAC	3 cut(s)	38, 62, 284
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	3 cut(s)	259, 295, 571
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	3 cut(s)	38, 62, 284
BsnI	GGCC	3 cut(s)	55, 185, 238
Bso31I	GGTCTC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	152, 294, 655
BspACI	CCGC	2 cut(s)	326, 383
BspANI	GGCC	3 cut(s)	55, 185, 238
BspCNI	CTCAG	1 cut(s)	660
BspFNI	CGCG	2 cut(s)	385, 594
BspLI	GGNNCC	2 cut(s)	362, 403
BspMAI	CTGCAG	1 cut(s)	497
BspPI	GGATC	3 cut(s)	160, 289, 663
BspT107I	GGYRCC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	259
BsrDI	GCAATG	2 cut(s)	283, 460
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	137, 266
BssMI	GATC	3 cut(s)	152, 294, 655
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	253, 289, 652
Bst6I	CTCTTC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	221, 668
BstF5I	GGATG	1 cut(s)	486
BstFNI	CGCG	2 cut(s)	385, 594
BstHHI	GCGC	3 cut(s)	387, 596, 614
BstKTI	GATC	3 cut(s)	155, 297, 658
BstMAI	GTCTC	3 cut(s)	259, 295, 571
BstMBI	GATC	3 cut(s)	152, 294, 655
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 501, 504, 507, 510, 513
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	2 cut(s)	493, 615
BstUI	CGCG	2 cut(s)	385, 594
BstV1I	GCAGC	9 cut(s)	145, 229, 507, 510, 513, 516, 519, 522, 525
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	55, 185, 238
BtsCI	GGATG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	154, 349, 657
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	3 cut(s)	387, 596, 614
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	67, 202, 343
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	8 cut(s)	55, 136, 185, 238, 444, 457, 516, 675
CviKI_1	RGCY	8 cut(s)	55, 136, 185, 238, 444, 457, 516, 675
CviQI	GTAC	3 cut(s)	67, 202, 343
DdeI	CTNAG	2 cut(s)	221, 668
DpnI	GATC	3 cut(s)	154, 296, 657
DpnII	GATC	3 cut(s)	152, 294, 655
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	1 cut(s)	335
FaiI	YATR	3 cut(s)	109, 263, 333
FalI	AAGNNNNNCTT	2 cut(s)	400, 432
FaqI	GGGAC	3 cut(s)	38, 62, 284
FatI	CATG	1 cut(s)	331
FauI	CCCGC	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	134, 243, 496, 499, 502, 505, 508, 511, 514
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	9 cut(s)	134, 243, 496, 499, 502, 505, 508, 511, 514
FspBI	CTAG	1 cut(s)	676
GlaI	GCGC	3 cut(s)	386, 595, 613
GluI	GCNGC	9 cut(s)	134, 243, 496, 499, 502, 505, 508, 511, 514
HaeIII	GGCC	3 cut(s)	55, 185, 238
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	3 cut(s)	387, 596, 614
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	3 cut(s)	385, 594, 612
HinP1I	GCGC	3 cut(s)	385, 594, 612
HinfI	GANTC	3 cut(s)	229, 576, 626
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	3 cut(s)	157, 318, 401
Hpy188III	TCNNGA	2 cut(s)	292, 636
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	1 cut(s)	31
HpyCH4III	ACNGT	3 cut(s)	253, 289, 652
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	5 cut(s)	245, 335, 495, 589, 664
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 501, 504, 507, 510, 513
HpyF3I	CTNAG	2 cut(s)	221, 668
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	3 cut(s)	385, 594, 612
Kzo9I	GATC	3 cut(s)	152, 294, 655
LmnI	GCTCC	1 cut(s)	521
Lsp1109I	GCAGC	9 cut(s)	145, 229, 507, 510, 513, 516, 519, 522, 525
MaeI	CTAG	1 cut(s)	676
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	3 cut(s)	154, 296, 657
MboI	GATC	3 cut(s)	152, 294, 655
MboII	GAAGA	4 cut(s)	43, 46, 134, 170
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	7 cut(s)	132, 308, 380, 421, 529, 556, 632
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	2 cut(s)	385, 594
MwoI	GCNNNNNNNGC	6 cut(s)	139, 501, 504, 507, 510, 513
NdeII	GATC	3 cut(s)	152, 294, 655
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	362, 403
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	576, 626
Pfl23II	CGTACG	1 cut(s)	342
PkrI	GCNGC	9 cut(s)	135, 244, 497, 500, 503, 506, 509, 512, 515
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspLI	CGTACG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	362, 403
PspPI	GGNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	3 cut(s)	68, 203, 344
RsaNI	GTAC	3 cut(s)	67, 202, 343
SatI	GCNGC	9 cut(s)	134, 243, 496, 499, 502, 505, 508, 511, 514
Sau3AI	GATC	3 cut(s)	152, 294, 655
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	351
SfcI	CTRYAG	2 cut(s)	493, 615
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	2 cut(s)	326, 383
SspMI	CTAG	1 cut(s)	676
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	3 cut(s)	253, 289, 652
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	5 cut(s)	293, 372, 480, 526, 559
TasI	AATT	1 cut(s)	621
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	576, 626
TscAI	CASTG	3 cut(s)	154, 356, 657
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	9 cut(s)	133, 242, 495, 498, 501, 504, 507, 510, 513
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	203, 449
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	3 cut(s)	154, 356, 657
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.