Rroxscaffold_4G00290670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001936
Physical Location & Seq
Reverse (-)
11180338 .. 11182250
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290670.1

Sequence Viewer

Length: 546 bp
ATGGGAATCAAAAAGAGAATGGTGGAAATCCCAATCGGAGGGAATGCGAGGGACAGGCCCTTGTACCTCCAAGTGCGCGAGGGTGATTCATTGTTATGGTTCGTAATCGAGGATAAACGCCAGCAACAACAACAACAAGAAGAATTTGAGAAGGCGAAAATTGGATCTGATGATGATATAATCTTCCGTCCACTTCATCTTCCCCAGTTTAGTTACCAGCGCTTTCCACGCAGCCTTCTGGTCATCAACTCCAAATTATACCTGCTCGATGGTTCTAAAAGTAATAATAGACGTCCGGAACCTGTGGGGGCATGTCCGTCCTTCCATACTGAACCGGCTAGGGAATATGAGTACTTGGACTTGCAAGAAAGGAGGTTACGTTGTCGTCGCCAGCCCTTTCGTCAATATCCTTGCACTCAGCATGTGGCTTCCTGCAAAGACGGTTTGATAAATGGCTTTGCACCTCATTCTTACATCATGGATCCTGCTTGCCGCGTCACTACTGAGCTGCCTCAAATTGTTGGTGAATATGGTCACGTCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

21.12

Weight (kDa)

8.6

Isoelectric Point (pI)

71.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 270
AccII CGCG 2 cut(s) 78, 495
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 1 cut(s) 493
AclWI GGATC 3 cut(s) 172, 476, 489
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 292
AfaI GTAC 2 cut(s) 65, 353
AfeI AGCGCT 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 38
AjiI CACGTC 1 cut(s) 538
AluBI AGCT 1 cut(s) 508
AluI AGCT 1 cut(s) 508
AlwI GGATC 3 cut(s) 172, 476, 489
Aor13HI TCCGGA 1 cut(s) 295
Aor51HI AGCGCT 1 cut(s) 221
AoxI GGCC 1 cut(s) 56
ApeKI GCWGC 2 cut(s) 231, 508
ApoI RAATTY 1 cut(s) 143
AspLEI GCGC 2 cut(s) 78, 222
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 95, 536
BamHI GGATCC 1 cut(s) 481
BbvI GCAGC 2 cut(s) 243, 495
BccI CCATC 1 cut(s) 263
BfaI CTAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 3 cut(s) 232, 493, 509
BlsI GCNGC 3 cut(s) 233, 494, 510
BmcAI AGTACT 1 cut(s) 353
BmgBI CACGTC 1 cut(s) 538
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 300, 483
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 205
BseAI TCCGGA 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 2 cut(s) 431, 495
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 2 cut(s) 243, 495
Bsh1236I CGCG 2 cut(s) 78, 495
BshFI GGCC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 296, 335
BslFI GGGAC 2 cut(s) 65, 524
BslI CCNNNNNNNGG 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 65, 524
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 58
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 2 cut(s) 164, 481
BspACI CCGC 1 cut(s) 493
BspANI GGCC 1 cut(s) 58
BspCNI CTCAG 2 cut(s) 430, 496
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 2 cut(s) 78, 495
BspLI GGNNCC 2 cut(s) 300, 483
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 3 cut(s) 172, 476, 489
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 334
BssMI GATC 2 cut(s) 164, 481
BssNI GRCGYC 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 122, 392, 490
BstDEI CTNAG 2 cut(s) 417, 504
BstFNI CGCG 2 cut(s) 78, 495
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 2 cut(s) 78, 222
BstKTI GATC 2 cut(s) 167, 484
BstMBI GATC 2 cut(s) 164, 481
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNSI RCATGY 2 cut(s) 315, 425
BstUI CGCG 2 cut(s) 78, 495
BstV1I GCAGC 2 cut(s) 243, 495
BstX2I RGATCY 2 cut(s) 164, 481
BstYI RGATCY 2 cut(s) 164, 481
BsuRI GGCC 1 cut(s) 58
BtrI CACGTC 1 cut(s) 538
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 3 cut(s) 122, 392, 490
CfoI GCGC 2 cut(s) 78, 222
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 57
CseI GACGC 1 cut(s) 484
Csp6I GTAC 2 cut(s) 64, 352
CviAII CATG 3 cut(s) 312, 422, 478
CviJI RGCY 7 cut(s) 58, 234, 338, 394, 428, 456, 508
CviKI_1 RGCY 7 cut(s) 58, 234, 338, 394, 428, 456, 508
CviQI GTAC 2 cut(s) 64, 352
DdeI CTNAG 2 cut(s) 417, 504
DpnI GATC 2 cut(s) 166, 483
DpnII GATC 2 cut(s) 164, 481
Eco47III AGCGCT 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 57
FaeI CATG 3 cut(s) 315, 425, 481
FaqI GGGAC 2 cut(s) 65, 524
FatI CATG 3 cut(s) 311, 421, 477
Fnu4HI GCNGC 3 cut(s) 232, 493, 509
Fsp4HI GCNGC 3 cut(s) 232, 493, 509
FspBI CTAG 1 cut(s) 339
GlaI GCGC 2 cut(s) 77, 221
GluI GCNGC 3 cut(s) 232, 493, 509
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 1 cut(s) 58
HapII CCGG 2 cut(s) 296, 335
HgaI GACGC 1 cut(s) 484
HhaI GCGC 2 cut(s) 78, 222
Hin1I GRCGYC 1 cut(s) 292
Hin1II CATG 3 cut(s) 315, 425, 481
Hin6I GCGC 2 cut(s) 76, 220
HinP1I GCGC 2 cut(s) 76, 220
HinfI GANTC 2 cut(s) 6, 86
HpaII CCGG 2 cut(s) 296, 335
HphI GGTGA 2 cut(s) 95, 536
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 38, 169
Hpy188III TCNNGA 1 cut(s) 296
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 3 cut(s) 145, 245, 331
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 3 cut(s) 292, 379, 537
HpyCH4V TGCA 4 cut(s) 364, 414, 435, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 2 cut(s) 417, 504
HpySE526I ACGT 3 cut(s) 292, 379, 537
Hsp92I GRCGYC 1 cut(s) 292
Hsp92II CATG 3 cut(s) 315, 425, 481
HspAI GCGC 2 cut(s) 76, 220
Kpn2I TCCGGA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 164, 481
Lsp1109I GCAGC 2 cut(s) 243, 495
MaeI CTAG 1 cut(s) 339
MaeII ACGT 3 cut(s) 292, 379, 537
MaeIII GTNAC 4 cut(s) 212, 375, 496, 533
MalI GATC 2 cut(s) 166, 483
MboI GATC 2 cut(s) 164, 481
MboII GAAGA 3 cut(s) 152, 175, 191
MflI RGATCY 2 cut(s) 164, 481
MluCI AATT 4 cut(s) 143, 159, 254, 516
MnlI CCTC 8 cut(s) 32, 42, 73, 77, 103, 366, 474, 522
MroI TCCGGA 1 cut(s) 295
MslI CAYNNNNRTG 1 cut(s) 94
MspI CCGG 2 cut(s) 296, 335
Mva1269I GAATGC 1 cut(s) 49
MvnI CGCG 2 cut(s) 78, 495
MwoI GCNNNNNNNGC 1 cut(s) 228
NdeII GATC 2 cut(s) 164, 481
NlaIII CATG 3 cut(s) 315, 425, 481
NlaIV GGNNCC 2 cut(s) 300, 483
NmuCI GTSAC 2 cut(s) 496, 533
NspI RCATGY 2 cut(s) 315, 425
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 6, 86
PkrI GCNGC 3 cut(s) 233, 494, 510
PspN4I GGNNCC 2 cut(s) 300, 483
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 2 cut(s) 164, 481
RsaI GTAC 2 cut(s) 65, 353
RsaNI GTAC 2 cut(s) 64, 352
RseI CAYNNNNRTG 1 cut(s) 94
SatI GCNGC 3 cut(s) 232, 493, 509
Sau3AI GATC 2 cut(s) 164, 481
Sau96I GGNCC 1 cut(s) 57
ScaI AGTACT 1 cut(s) 353
SetI ASST 9 cut(s) 69, 264, 295, 304, 377, 382, 466, 510, 540
SmiMI CAYNNNNRTG 1 cut(s) 94
Sse9I AATT 4 cut(s) 143, 159, 254, 516
SsiI CCGC 1 cut(s) 493
SspMI CTAG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 3 cut(s) 295, 382, 540
TaqI TCGA 2 cut(s) 108, 267
TasI AATT 4 cut(s) 143, 159, 254, 516
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 2 cut(s) 6, 86
TseFI GTSAC 2 cut(s) 496, 533
TseI GCWGC 2 cut(s) 231, 508
Tsp45I GTSAC 2 cut(s) 496, 533
TspDTI ATGAA 2 cut(s) 78, 185
TspGWI ACGGA 2 cut(s) 176, 306
XapI RAATTY 1 cut(s) 143
XceI RCATGY 2 cut(s) 315, 425
XspI CTAG 1 cut(s) 339
ZraI GACGTC 1 cut(s) 293
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.