Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

47313541 .. 47314723

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGAAAGAAAAACAAAACAAGGGACAAGAAGAAGAAGAAGAAGGTTGCGCGGGACAGGCCCATCTACCTGTACGTAGAGGTCAAGGCAGACGACAACTCGGTGTCGTGTTTATGGTTCGTCATTGAAGACGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGACGATGATAAGGTAATCTTCCGTCGCCTAGATCTTCCCGAATTTGATGATTATTACCTGCGCCTTCCTCGCAGCGTTGTGGTCTTGGACTCCCGATTATTCATGATTGGTGGATCTCAATGTAGAAAGCGAGATTGCTCTGTGGAATCCTACATTGGGTATGATTACTTGGACCTGAAACCCTCCTATGTAGCCAAAGAATGGCGTTCTGAACAAGGGGTTTCATTCCCTTCGCAACAGTCGGTGGCCCGCTACAAAGACGGTCGAACAAGTATATTTACACCTATTCCCTTGGTACTTATAATCACCTGTCTCGTTATGATTTGGAGAAAAACGAGTGGGACTGCATCTCTAGCAGTTTCTGGGGTCTCTGGGGCCCTGGAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.52

Weight (kDa)

9.21

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
Acc36I	ACCTGC	1 cut(s)	240
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccII	CGCG	1 cut(s)	52
AciI	CCGC	3 cut(s)	52, 139, 424
AclWI	GGATC	2 cut(s)	166, 295
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	2 cut(s)	74, 471
AfiI	CCNNNNNNNGG	3 cut(s)	330, 375, 558
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	552
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
Alw26I	GTCTC	2 cut(s)	491, 547
AlwI	GGATC	2 cut(s)	166, 295
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	4 cut(s)	59, 140, 420, 549
ApaI	GGGCCC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	52, 237
AspS9I	GGNCC	5 cut(s)	60, 346, 421, 549, 550
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	491, 547
BfaI	CTAG	2 cut(s)	203, 527
BfuAI	ACCTGC	1 cut(s)	240
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	2 cut(s)	140, 247
BlsI	GCNGC	2 cut(s)	141, 248
Bme1390I	CCNGG	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	5 cut(s)	60, 346, 421, 549, 550
BmiI	GGNNCC	2 cut(s)	550, 551
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	76
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	3 cut(s)	143, 465, 552
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 375, 558
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	3 cut(s)	143, 465, 552
BseLI	CCNNNNNNNGG	3 cut(s)	330, 375, 558
BseSI	GKGCMC	1 cut(s)	553
BseX3I	CGGCCG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	2 cut(s)	143, 439
BshFI	GGCC	4 cut(s)	61, 142, 422, 551
BsiEI	CGRYCG	2 cut(s)	143, 439
BslFI	GGGAC	3 cut(s)	38, 68, 529
BslI	CCNNNNNNNGG	3 cut(s)	330, 375, 558
BsmAI	GTCTC	2 cut(s)	491, 547
BsmFI	GGGAC	3 cut(s)	38, 68, 529
BsnI	GGCC	4 cut(s)	61, 142, 422, 551
Bso31I	GGTCTC	1 cut(s)	547
Bsp120I	GGGCCC	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	3 cut(s)	158, 205, 287
BspACI	CCGC	3 cut(s)	52, 139, 424
BspANI	GGCC	4 cut(s)	61, 142, 422, 551
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	550, 551
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	166, 295
BspTNI	GGTCTC	1 cut(s)	547
BssECI	CCNNGG	3 cut(s)	143, 465, 552
BssMI	GATC	3 cut(s)	158, 205, 287
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	2 cut(s)	414, 437
Bst6I	CTCTTC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	52, 237
BstKTI	GATC	3 cut(s)	161, 208, 290
BstMAI	GTCTC	2 cut(s)	491, 547
BstMBI	GATC	3 cut(s)	158, 205, 287
BstMCI	CGRYCG	2 cut(s)	143, 439
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 145, 243, 527
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	553
BstSNI	TACGTA	1 cut(s)	76
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	3 cut(s)	158, 205, 287
BstYI	RGATCY	3 cut(s)	158, 205, 287
BstZI	CGGCCG	1 cut(s)	140
BsuRI	GGCC	4 cut(s)	61, 142, 422, 551
BtsIMutI	CAGTG	1 cut(s)	160
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	536
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	2 cut(s)	52, 237
Cfr13I	GGNCC	5 cut(s)	60, 346, 421, 549, 550
Csp6I	GTAC	2 cut(s)	73, 470
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	5 cut(s)	61, 142, 368, 422, 551
CviKI_1	RGCY	5 cut(s)	61, 142, 368, 422, 551
CviQI	GTAC	2 cut(s)	73, 470
DpnI	GATC	3 cut(s)	160, 207, 289
DpnII	GATC	3 cut(s)	158, 205, 287
EaeI	YGGCCR	1 cut(s)	140
EagI	CGGCCG	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	140
Eco105I	TACGTA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	346
Eco52I	CGGCCG	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	549, 550
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	1 cut(s)	280
FaiI	YATR	7 cut(s)	115, 278, 336, 363, 449, 476, 494
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	3 cut(s)	38, 68, 529
FatI	CATG	1 cut(s)	276
FauI	CCCGC	2 cut(s)	45, 431
Fnu4HI	GCNGC	2 cut(s)	140, 247
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	2 cut(s)	140, 247
FspBI	CTAG	2 cut(s)	203, 527
GlaI	GCGC	2 cut(s)	51, 236
GluI	GCNGC	2 cut(s)	140, 247
HaeIII	GGCC	4 cut(s)	61, 142, 422, 551
HhaI	GCGC	2 cut(s)	52, 237
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	50, 235
HinP1I	GCGC	2 cut(s)	50, 235
HinfI	GANTC	2 cut(s)	263, 320
HphI	GGTGA	1 cut(s)	472
Hpy188I	TCNGA	2 cut(s)	163, 385
Hpy188III	TCNNGA	3 cut(s)	212, 267, 277
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	37, 248, 414
HpyCH4III	ACNGT	2 cut(s)	414, 437
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 145, 243, 527
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	50, 235
Kzo9I	GATC	3 cut(s)	158, 205, 287
LpnPI	CCDG	8 cut(s)	43, 83, 245, 362, 496, 522, 531, 539
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	2 cut(s)	203, 527
MaeII	ACGT	1 cut(s)	75
MalI	GATC	3 cut(s)	160, 207, 289
MboI	GATC	3 cut(s)	158, 205, 287
MboII	GAAGA	8 cut(s)	43, 46, 49, 52, 140, 176, 184, 200
MflI	RGATCY	3 cut(s)	158, 205, 287
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	4 cut(s)	73, 138, 252, 367
MspR9I	CCNGG	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	58, 145, 243, 527
NdeII	GATC	3 cut(s)	158, 205, 287
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	2 cut(s)	550, 551
NmeAIII	GCCGAG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	320
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	141, 248
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	76
PsiI	TTATAA	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	550, 551
PspOMI	GGGCCC	1 cut(s)	549
PspPI	GGNCC	5 cut(s)	60, 346, 421, 549, 550
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	3 cut(s)	158, 205, 287
RsaI	GTAC	2 cut(s)	74, 471
RsaNI	GTAC	2 cut(s)	73, 470
SatI	GCNGC	2 cut(s)	140, 247
Sau3AI	GATC	3 cut(s)	158, 205, 287
Sau96I	GGNCC	5 cut(s)	60, 346, 421, 549, 550
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	9 cut(s)	48, 72, 78, 84, 189, 234, 351, 460, 485
SfaNI	GCATC	1 cut(s)	530
SinI	GGWCC	1 cut(s)	346
SnaBI	TACGTA	1 cut(s)	76
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	3 cut(s)	52, 139, 424
SspMI	CTAG	2 cut(s)	203, 527
StyD4I	CCNGG	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	414, 437
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	439
TasI	AATT	1 cut(s)	215
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	265, 387
TspGWI	ACGGA	2 cut(s)	147, 185
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	2 cut(s)	203, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.