Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

47140817 .. 47141988

Gene Structure 1172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG336800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGAAAGAAAAACAAAACAAGGGACAAGAAGAAGAAGAAGAAGGTTGCGCGGGACAGGCCCATCTACCTGTACGTAGAGGTCAAGGCAGACGACAACTCGGTGTCGTGTTTATGGTTCGTCATTGAAGACGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGACGATGATAAGAAAGCGAGATTGCTCTGTGGAATCCTACATTGGCGTCAGTGGCTAGATGAACAAGTTAAGGGCCTTGATGATGCTCTCCCCGTTATCCCAGACACCAGCAGCTCTCATCAAACCAACAATCAACCCACCTCCTTTGTTGCTCGAATAGTCTCTAATGGAGTCCTTACATTGAAAGACGCCGGATTGCTTGGTTGCACTGTAGGAATTGAATCTTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

8.76

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	52
AciI	CCGC	2 cut(s)	52, 139
AclWI	GGATC	1 cut(s)	166
AcoI	YGGCCR	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	2 cut(s)	220, 363
AfaI	GTAC	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	128, 358, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	199, 231
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	3 cut(s)	59, 140, 247
ApeKI	GCWGC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	2 cut(s)	60, 247
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	140, 286
BlsI	GCNGC	2 cut(s)	141, 287
BmgT120I	GGNCC	2 cut(s)	60, 247
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	76
BsaHI	GRCGYC	2 cut(s)	220, 363
BsaJI	CCNNGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	143
BseX3I	CGGCCG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	3 cut(s)	61, 142, 249
BsiEI	CGRYCG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	38, 68
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	2 cut(s)	38, 68
BsnI	GGCC	3 cut(s)	61, 142, 249
Bsp143I	GATC	1 cut(s)	158
BspACI	CCGC	2 cut(s)	52, 139
BspANI	GGCC	3 cut(s)	61, 142, 249
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	404
BspPI	GGATC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	1 cut(s)	158
BssNI	GRCGYC	2 cut(s)	220, 363
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	2 cut(s)	220, 363
BstBAI	YACGTR	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	158
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 145, 226
BstSFI	CTRYAG	1 cut(s)	384
BstSNI	TACGTA	1 cut(s)	76
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BstZI	CGGCCG	1 cut(s)	140
BsuRI	GGCC	3 cut(s)	61, 142, 249
BtsIMutI	CAGTG	3 cut(s)	160, 230, 381
CciI	TCATGA	1 cut(s)	404
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	60, 247
CseI	GACGC	2 cut(s)	209, 371
Csp6I	GTAC	1 cut(s)	73
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	5 cut(s)	61, 142, 229, 249, 288
CviKI_1	RGCY	5 cut(s)	61, 142, 229, 249, 288
CviQI	GTAC	1 cut(s)	73
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	140
EagI	CGGCCG	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	140
Eco105I	TACGTA	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	247
FaeI	CATG	1 cut(s)	408
FaiI	YATR	2 cut(s)	115, 406
FaqI	GGGAC	2 cut(s)	38, 68
FatI	CATG	1 cut(s)	404
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	140, 286
Fsp4HI	GCNGC	2 cut(s)	140, 286
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	2 cut(s)	140, 286
HaeIII	GGCC	3 cut(s)	61, 142, 249
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	2 cut(s)	209, 371
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	2 cut(s)	220, 363
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	3 cut(s)	207, 345, 395
HpaII	CCGG	1 cut(s)	366
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	405
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	381
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 145, 226
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	2 cut(s)	220, 363
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	158
LpnPI	CCDG	5 cut(s)	43, 83, 288, 295, 379
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	75
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MboII	GAAGA	6 cut(s)	43, 46, 49, 52, 140, 176
MflI	RGATCY	1 cut(s)	158
MluCI	AATT	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	3 cut(s)	73, 138, 325
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	58, 145, 226
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	408
NmeAIII	GCCGAG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	207, 395
PkrI	GCNGC	2 cut(s)	141, 287
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	60, 247
PsuI	RGATCY	1 cut(s)	158
RsaI	GTAC	1 cut(s)	74
RsaNI	GTAC	1 cut(s)	73
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	140, 286
Sau3AI	GATC	1 cut(s)	158
Sau96I	GGNCC	2 cut(s)	60, 247
SchI	GAGTC	1 cut(s)	354
SetI	ASST	6 cut(s)	48, 72, 78, 84, 290, 317
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	384
SnaBI	TACGTA	1 cut(s)	76
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	2 cut(s)	52, 139
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	390
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	207, 395
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	3 cut(s)	160, 230, 388
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	2 cut(s)	249, 393
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	3 cut(s)	160, 230, 388
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.