Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

43253854 .. 43255440

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG361600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGGAAAGAAAAACAAAACAAGGGACAAGAAGAAGAAGGTTGCGCGGGACAGGCCCATGTACCTGTACGTAGAGGTCAAGGCAGACGACAACTCGGTGTCGTGTTTATGGTTCGTCATTGAAGACGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGACGATGATAAGATAATCTTCCGTCGCCTAGATCTTCCCGAATTTGATGATTATTACCTGCGCCTTCCTCGCAGCGTTGTGGTCTTGGACTCCCAATTATTCATGATTGGGTATGATTACTTGGACCTGAAACCCTCCTCCTATGTAGCCAAGGAATGGCGTTCTGAACAAGGGGTTTCATTCCCTTCGCAACAGTCTGTGGCCTGCTACAAAGACGGTCTCATCTATACCTTGGGACATGGAGGTTGTCACCGTCTCGATCCTCGCTCTGGTGTCCGTTCGGAGTTTCCCGCCACGTGCGGGTTTCGAACACAGCTTGGAATGTCGAACAAGTATATTTACACCTATTCCCTTGGTATTTATAATCACCTGTCTCGTTATGATTTGGAGAAAAACGAGTTTGACTGCATCTCTAGCAGTTTCTGGGGTCTCTGGGGCCCTGGAGTGGTAATTTCCGGTGACTCCTACTTATTATGCTTTGGCACTATGAAACCCACCGAAAGATTCTCCGGGCCGCCTGGTGTTTACGTTTTTGATATTCGCCAGCGTCAGTGGCTAGATGAACCAGTTAAGGGCCTTGATGATGCTCTCCCCGTTATCCCAGACACGTACGAGCCCTGGGAAAGGCACATTTACCTCTGTGATATACCGCGCGTGTTCCAAATCGGAACCAAAAGATTTGCTCTGGTTTGGGAGGAACTTTCTGTGAAAGATGATGATTGTCGGCTTCATTGCCACAAGTTCACCATCGACCACATCCCCTGCAGCAGCAGCTCTCATCAAACCAACAATCAACCCACCTCCTTTGTTGCTCGAATAGTCTCTAATGGAGTCCTTACTCTGAAAGACGCCGGATTACTTGGTTGCACTGTAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

40.03

Weight (kDa)

6.26

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	234
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccII	CGCG	3 cut(s)	46, 820, 822
AciI	CCGC	6 cut(s)	46, 133, 459, 468, 683, 818
AclWI	GGATC	2 cut(s)	160, 422
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	1017
AfaI	GTAC	3 cut(s)	62, 68, 779
AfiI	CCNNNNNNNGG	6 cut(s)	324, 437, 468, 613, 740, 792
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	3 cut(s)	607, 685, 785
AluBI	AGCT	2 cut(s)	484, 942
AluI	AGCT	2 cut(s)	484, 942
Alw26I	GTCTC	5 cut(s)	392, 428, 546, 602, 994
AlwI	GGATC	2 cut(s)	160, 422
AlwNI	CAGNNNCTG	1 cut(s)	591
AoxI	GGCC	6 cut(s)	53, 134, 369, 604, 680, 742
ApaI	GGGCCC	1 cut(s)	608
ApeKI	GCWGC	4 cut(s)	240, 933, 936, 939
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	3 cut(s)	46, 231, 822
AspS9I	GGNCC	6 cut(s)	54, 292, 604, 605, 680, 742
AsuC2I	CCSGG	1 cut(s)	679
AsuHPI	GGTGA	4 cut(s)	410, 527, 638, 904
AsuII	TTCGAA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	608, 786
BbrPI	CACGTG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	252, 945, 948, 951
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	3 cut(s)	609, 687, 787
BcnI	CCSGG	1 cut(s)	679
BcoDI	GTCTC	5 cut(s)	392, 428, 546, 602, 994
BfaI	CTAG	3 cut(s)	197, 582, 725
BfmI	CTRYAG	2 cut(s)	931, 1038
BfuAI	ACCTGC	1 cut(s)	234
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	6 cut(s)	134, 241, 683, 934, 937, 940
BlsI	GCNGC	6 cut(s)	135, 242, 684, 935, 938, 941
Bme1390I	CCNGG	4 cut(s)	609, 679, 687, 787
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	6 cut(s)	54, 292, 604, 605, 680, 742
BmiI	GGNNCC	3 cut(s)	605, 606, 838
BmrFI	CCNGG	4 cut(s)	609, 679, 687, 787
BmsI	GCATC	2 cut(s)	585, 742
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	679
BsaAI	YACGTR	3 cut(s)	70, 465, 777
BsaHI	GRCGYC	1 cut(s)	1017
BsaI	GGTCTC	2 cut(s)	392, 602
BsaJI	CCNNGG	7 cut(s)	137, 318, 399, 520, 607, 785, 786
BsaWI	WCCGGW	1 cut(s)	623
Bsc4I	CCNNNNNNNGG	6 cut(s)	324, 437, 468, 613, 740, 792
Bse1I	ACTGG	1 cut(s)	734
Bse3DI	GCAATG	1 cut(s)	898
BseBI	CCWGG	3 cut(s)	609, 687, 787
BseDI	CCNNGG	7 cut(s)	137, 318, 399, 520, 607, 785, 786
BseGI	GGATG	1 cut(s)	924
BseLI	CCNNNNNNNGG	6 cut(s)	324, 437, 468, 613, 740, 792
BseMI	GCAATG	1 cut(s)	898
BseNI	ACTGG	1 cut(s)	734
BseRI	GAGGAG	1 cut(s)	295
BseSI	GKGCMC	1 cut(s)	608
BseX3I	CGGCCG	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	252, 945, 948, 951
Bsh1236I	CGCG	3 cut(s)	46, 820, 822
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	6 cut(s)	55, 136, 371, 606, 682, 744
BsiEI	CGRYCG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	624, 678, 1020
BsiWI	CGTACG	1 cut(s)	777
BslFI	GGGAC	3 cut(s)	38, 62, 417
BslI	CCNNNNNNNGG	6 cut(s)	324, 437, 468, 613, 740, 792
BsmAI	GTCTC	5 cut(s)	392, 428, 546, 602, 994
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	3 cut(s)	38, 62, 417
BsnI	GGCC	6 cut(s)	55, 136, 371, 606, 682, 744
Bso31I	GGTCTC	2 cut(s)	392, 602
Bsp119I	TTCGAA	1 cut(s)	475
Bsp120I	GGGCCC	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	608, 786
Bsp143I	GATC	3 cut(s)	152, 199, 427
BspACI	CCGC	6 cut(s)	46, 133, 459, 468, 683, 818
BspANI	GGCC	6 cut(s)	55, 136, 371, 606, 682, 744
BspFNI	CGCG	3 cut(s)	46, 820, 822
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	605, 606, 838
BspMAI	CTGCAG	1 cut(s)	935
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	160, 422
BspT104I	TTCGAA	1 cut(s)	475
BspTNI	GGTCTC	2 cut(s)	392, 602
BsrDI	GCAATG	1 cut(s)	898
BsrI	ACTGG	1 cut(s)	734
BssECI	CCNNGG	7 cut(s)	137, 318, 399, 520, 607, 785, 786
BssMI	GATC	3 cut(s)	152, 199, 427
BssNI	GRCGYC	1 cut(s)	1017
BssT1I	CCWWGG	3 cut(s)	318, 399, 520
Bst2UI	CCWGG	3 cut(s)	609, 687, 787
Bst4CI	ACNGT	4 cut(s)	363, 386, 422, 1039
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	1017
BstBAI	YACGTR	3 cut(s)	70, 465, 777
BstBI	TTCGAA	1 cut(s)	475
BstC8I	GCNNGC	2 cut(s)	373, 713
BstENI	CCTNNNNNAGG	1 cut(s)	790
BstF5I	GGATG	1 cut(s)	924
BstFNI	CGCG	3 cut(s)	46, 820, 822
BstHHI	GCGC	3 cut(s)	46, 231, 822
BstKTI	GATC	3 cut(s)	155, 202, 430
BstMAI	GTCTC	5 cut(s)	392, 428, 546, 602, 994
BstMBI	GATC	3 cut(s)	152, 199, 427
BstMCI	CGRYCG	1 cut(s)	137
BstMWI	GCNNNNNNNGC	6 cut(s)	52, 139, 237, 582, 721, 939
BstNI	CCWGG	3 cut(s)	609, 687, 787
BstSCI	CCNGG	4 cut(s)	607, 677, 685, 785
BstSFI	CTRYAG	2 cut(s)	931, 1038
BstSLI	GKGCMC	1 cut(s)	608
BstSNI	TACGTA	1 cut(s)	70
BstUI	CGCG	3 cut(s)	46, 820, 822
BstV1I	GCAGC	4 cut(s)	252, 945, 948, 951
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	152, 199
BstYI	RGATCY	2 cut(s)	152, 199
BstZI	CGGCCG	1 cut(s)	134
BsuRI	GGCC	6 cut(s)	55, 136, 371, 606, 682, 744
BtsCI	GGATG	1 cut(s)	924
BtsIMutI	CAGTG	3 cut(s)	154, 725, 1035
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	373, 713
CaiI	CAGNNNCTG	1 cut(s)	591
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	3 cut(s)	46, 231, 822
Cfr13I	GGNCC	6 cut(s)	54, 292, 604, 605, 680, 742
CseI	GACGC	2 cut(s)	704, 1025
Csp6I	GTAC	3 cut(s)	61, 67, 778
CspCI	CAANNNNNGTGG	2 cut(s)	955, 990
CviAII	CATG	3 cut(s)	58, 271, 407
CviQI	GTAC	3 cut(s)	61, 67, 778
DpnI	GATC	3 cut(s)	154, 201, 429
DpnII	GATC	3 cut(s)	152, 199, 427
EaeI	YGGCCR	1 cut(s)	134
EagI	CGGCCG	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EclXI	CGGCCG	1 cut(s)	134
Eco105I	TACGTA	1 cut(s)	70
Eco130I	CCWWGG	3 cut(s)	318, 399, 520
Eco24I	GRGCYC	2 cut(s)	608, 786
Eco31I	GGTCTC	2 cut(s)	392, 602
Eco47I	GGWCC	1 cut(s)	292
Eco52I	CGGCCG	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	465
EcoNI	CCTNNNNNAGG	1 cut(s)	790
EcoO109I	RGGNCCY	3 cut(s)	604, 605, 742
EcoRII	CCWGG	3 cut(s)	607, 685, 785
EcoT14I	CCWWGG	3 cut(s)	318, 399, 520
EcoT38I	GRGCYC	2 cut(s)	608, 786
ErhI	CCWWGG	3 cut(s)	318, 399, 520
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	3 cut(s)	61, 274, 410
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	3 cut(s)	38, 62, 417
FatI	CATG	3 cut(s)	57, 270, 406
FauI	CCCGC	3 cut(s)	39, 461, 466
Fnu4HI	GCNGC	6 cut(s)	134, 241, 683, 934, 937, 940
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	2 cut(s)	608, 786
Fsp4HI	GCNGC	6 cut(s)	134, 241, 683, 934, 937, 940
FspBI	CTAG	3 cut(s)	197, 582, 725
GlaI	GCGC	3 cut(s)	45, 230, 821
GluI	GCNGC	6 cut(s)	134, 241, 683, 934, 937, 940
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	6 cut(s)	55, 136, 371, 606, 682, 744
HapII	CCGG	3 cut(s)	624, 678, 1020
HgaI	GACGC	2 cut(s)	704, 1025
HhaI	GCGC	3 cut(s)	46, 231, 822
Hin1I	GRCGYC	1 cut(s)	1017
Hin1II	CATG	3 cut(s)	61, 274, 410
Hin6I	GCGC	3 cut(s)	44, 229, 820
HinP1I	GCGC	3 cut(s)	44, 229, 820
HinfI	GANTC	4 cut(s)	257, 629, 672, 999
HpaII	CCGG	3 cut(s)	624, 678, 1020
HphI	GGTGA	4 cut(s)	410, 527, 638, 904
Hpy166II	GTNNAC	2 cut(s)	694, 912
Hpy188I	TCNGA	5 cut(s)	157, 334, 451, 836, 1011
Hpy188III	TCNNGA	3 cut(s)	206, 271, 425
Hpy8I	GTNNAC	2 cut(s)	694, 912
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	31, 242, 363
HpyCH4III	ACNGT	4 cut(s)	363, 386, 422, 1039
HpyCH4IV	ACGT	4 cut(s)	69, 464, 696, 776
HpyCH4V	TGCA	3 cut(s)	576, 933, 1035
HpyF10VI	GCNNNNNNNGC	6 cut(s)	52, 139, 237, 582, 721, 939
HpySE526I	ACGT	4 cut(s)	69, 464, 696, 776
Hsp92I	GRCGYC	1 cut(s)	1017
Hsp92II	CATG	3 cut(s)	61, 274, 410
HspAI	GCGC	3 cut(s)	44, 229, 820
Kzo9I	GATC	3 cut(s)	152, 199, 427
Lsp1109I	GCAGC	4 cut(s)	252, 945, 948, 951
LweI	GCATC	2 cut(s)	585, 742
MaeI	CTAG	3 cut(s)	197, 582, 725
MaeII	ACGT	4 cut(s)	69, 464, 696, 776
MaeIII	GTNAC	2 cut(s)	416, 626
MalI	GATC	3 cut(s)	154, 201, 429
MboI	GATC	3 cut(s)	152, 199, 427
MboII	GAAGA	6 cut(s)	43, 46, 134, 170, 178, 194
MflI	RGATCY	2 cut(s)	152, 199
MhlI	GDGCHC	2 cut(s)	608, 786
MluCI	AATT	3 cut(s)	209, 263, 618
MlyI	GAGTC	3 cut(s)	251, 623, 1008
MseI	TTAA	1 cut(s)	738
MspI	CCGG	3 cut(s)	624, 678, 1020
MspR9I	CCNGG	4 cut(s)	609, 679, 687, 787
MvaI	CCWGG	3 cut(s)	609, 687, 787
MvnI	CGCG	3 cut(s)	46, 820, 822
MwoI	GCNNNNNNNGC	6 cut(s)	52, 139, 237, 582, 721, 939
NciI	CCSGG	1 cut(s)	679
NdeII	GATC	3 cut(s)	152, 199, 427
NlaIII	CATG	3 cut(s)	61, 274, 410
NlaIV	GGNNCC	3 cut(s)	605, 606, 838
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	416, 626
NspV	TTCGAA	1 cut(s)	475
PagI	TCATGA	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	786
PfeI	GAWTC	1 cut(s)	672
Pfl23II	CGTACG	1 cut(s)	777
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	6 cut(s)	135, 242, 684, 935, 938, 941
PleI	GAGTC	3 cut(s)	251, 623, 1007
PmaCI	CACGTG	1 cut(s)	465
PmlI	CACGTG	1 cut(s)	465
PpsI	GAGTC	3 cut(s)	251, 623, 1007
Ppu21I	YACGTR	3 cut(s)	70, 465, 777
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	3 cut(s)	607, 685, 785
PspCI	CACGTG	1 cut(s)	465
PspGI	CCWGG	3 cut(s)	607, 685, 785
PspLI	CGTACG	1 cut(s)	777
PspN4I	GGNNCC	3 cut(s)	605, 606, 838
PspOMI	GGGCCC	1 cut(s)	604
PspPI	GGNCC	6 cut(s)	54, 292, 604, 605, 680, 742
PstI	CTGCAG	1 cut(s)	935
PstNI	CAGNNNCTG	1 cut(s)	591
PsuI	RGATCY	2 cut(s)	152, 199
RsaI	GTAC	3 cut(s)	62, 68, 779
RsaNI	GTAC	3 cut(s)	61, 67, 778
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	6 cut(s)	134, 241, 683, 934, 937, 940
Sau3AI	GATC	3 cut(s)	152, 199, 427
Sau96I	GGNCC	6 cut(s)	54, 292, 604, 605, 680, 742
SchI	GAGTC	3 cut(s)	251, 623, 1008
ScrFI	CCNGG	4 cut(s)	609, 679, 687, 787
SduI	GDGCHC	2 cut(s)	608, 786
SfaNI	GCATC	2 cut(s)	585, 742
SfcI	CTRYAG	2 cut(s)	931, 1038
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	1 cut(s)	292
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	3 cut(s)	209, 263, 618
SsiI	CCGC	6 cut(s)	46, 133, 459, 468, 683, 818
SspMI	CTAG	3 cut(s)	197, 582, 725
StyD4I	CCNGG	4 cut(s)	607, 677, 685, 785
StyI	CCWWGG	3 cut(s)	318, 399, 520
TaaI	ACNGT	4 cut(s)	363, 386, 422, 1039
TaiI	ACGT	4 cut(s)	72, 467, 699, 779
TaqI	TCGA	5 cut(s)	426, 475, 494, 918, 982
TasI	AATT	3 cut(s)	209, 263, 618
TauI	GCSGC	2 cut(s)	136, 685
TfiI	GAWTC	1 cut(s)	672
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	3 cut(s)	154, 725, 1042
TseFI	GTSAC	2 cut(s)	416, 626
TseI	GCWGC	4 cut(s)	240, 933, 936, 939
Tsp45I	GTSAC	2 cut(s)	416, 626
TspDTI	ATGAA	5 cut(s)	259, 336, 671, 744, 887
TspGWI	ACGGA	3 cut(s)	141, 179, 434
TspRI	CASTG	3 cut(s)	154, 725, 1042
Van91I	CCANNNNNTGG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	790
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	3 cut(s)	197, 582, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.