Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

17305235 .. 17306480

Gene Structure 1246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGAATCAAAGAGACAACGGTGGCAATCACAAGGGATAAGAATGCGAGGGACAAGCCCTTTTACGTTCAGGTTTGCGAGGGCGATTCGTCGTTATGGTTTGTAATCGAGGATGGACGCCAGCAACAACACCAGCAAGAAGAATCTGAGAAGGCCAAAATTGGATCTGATGAGGCTGCTTTAAATTCCGTCGACTTCATCAACTCCAAATACCTCCTCGGTGGTGTTAAAATTAATTACCGTCAGGTACCGGAAGGGGAAATTCAGTTCTTTCACCCGGAACCGGCCAGGGAATACGAGTTCTTGGATTTGCAAGAAAGGAGGTTGCGTTGGCGTCGCCAGTCCTTTGGTCAATATCACAATTACACTCAGCATATGGCTTCCTCCAAAGATGGTTTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.73

Weight (kDa)

5.81

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	192
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	184, 261
AcyI	GRCGYC	2 cut(s)	118, 334
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	287
AjuI	GAANNNNNNNTTGG	1 cut(s)	380
AloI	GAACNNNNNNTCC	4 cut(s)	251, 283, 284, 316
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	153, 285
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	2 cut(s)	184, 261
AseI	ATTAAT	1 cut(s)	234
Asp718I	GGTACC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	107, 386
BciT130I	CCWGG	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	278, 289
BmiI	GGNNCC	2 cut(s)	249, 282
BmrFI	CCNGG	2 cut(s)	278, 289
BpuMI	CCSGG	1 cut(s)	278
BsaHI	GRCGYC	2 cut(s)	118, 334
BsaJI	CCNNGG	2 cut(s)	217, 288
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	217, 288
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	138, 383
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	2 cut(s)	155, 287
BshNI	GGYRCC	1 cut(s)	247
BsiSI	CCGG	3 cut(s)	251, 278, 284
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	155, 287
Bsp143I	GATC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	155, 287
BspCNI	CTCAG	2 cut(s)	139, 382
BspLI	GGNNCC	2 cut(s)	249, 282
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	217, 288
BssMI	GATC	1 cut(s)	164
BssNI	GRCGYC	2 cut(s)	118, 334
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	22, 242
BstACI	GRCGYC	2 cut(s)	118, 334
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	147, 369
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	276, 287
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	155, 287
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	283
CseI	GACGC	2 cut(s)	126, 323
Csp6I	GTAC	1 cut(s)	248
CviJI	RGCY	5 cut(s)	58, 155, 176, 287, 380
CviKI_1	RGCY	5 cut(s)	58, 155, 176, 287, 380
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	147, 369
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	287
FaiI	YATR	3 cut(s)	97, 375, 377
FaqI	GGGAC	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	375
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	155, 287
HapII	CCGG	3 cut(s)	251, 278, 284
HgaI	GACGC	2 cut(s)	126, 323
Hin1I	GRCGYC	2 cut(s)	118, 334
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	6, 86, 143
HpaII	CCGG	3 cut(s)	251, 278, 284
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	148, 169
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	3 cut(s)	94, 194, 339
HpyAV	CCTTC	2 cut(s)	145, 248
HpyCH4III	ACNGT	2 cut(s)	22, 242
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	313
HpyF3I	CTNAG	2 cut(s)	147, 369
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	118, 334
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	164
Lsp1109I	GCAGC	1 cut(s)	163
MaeII	ACGT	1 cut(s)	66
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	1 cut(s)	152
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	6 cut(s)	159, 184, 231, 235, 261, 361
MnlI	CCTC	8 cut(s)	42, 73, 103, 166, 224, 227, 315, 394
MseI	TTAA	3 cut(s)	182, 228, 234
MspI	CCGG	3 cut(s)	251, 278, 284
MspR9I	CCNGG	2 cut(s)	278, 289
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	289
NciI	CCSGG	1 cut(s)	278
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	1 cut(s)	164
NlaIV	GGNNCC	2 cut(s)	249, 282
PctI	GAATGC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	6, 86, 143
PkrI	GCNGC	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	249, 282
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	182, 228, 234
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	278, 289
SetI	ASST	5 cut(s)	69, 75, 216, 249, 326
Sse9I	AATT	6 cut(s)	159, 184, 231, 235, 261, 361
StyD4I	CCNGG	2 cut(s)	276, 287
TaaI	ACNGT	2 cut(s)	22, 242
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	108, 192
TasI	AATT	6 cut(s)	159, 184, 231, 235, 261, 361
TfiI	GAWTC	3 cut(s)	6, 86, 143
Tru1I	TTAA	3 cut(s)	182, 228, 234
Tru9I	TTAA	3 cut(s)	182, 228, 234
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	187, 388
TspGWI	ACGGA	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	2 cut(s)	184, 261
XmiI	GTMKAC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.