RLG00000027154

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001936
Physical Location & Seq
Forward (+)
9087954 .. 9088998
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027154

Sequence Viewer

Length: 825 bp
ATGGGAAAGAAAAACAAAACGTGGGACAAGAAGAAGAAGAAGGTTGCTTGGGATAGGCCCATCTACCTGTACCTACAGGCCAAGGCAGACGACAACTCGGCGTCGTGTTTATGGTTCGTCATTGAAGATGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGATGATGATGATAATAAGCGAGATTCCTCTGGTGTGAAATCCTATATTGGGTATGATTACTTGGACCTGAAACAACCCTCCTACGAAGGCAAGGAATGGCGTTCTGAACGAGGGGTTTCATTCCCTTCGCAAGAGTCGTTGGCCTGCTGCAAAGACGGTCTCATCTATACCTTGGGACAGCAATGTTGTCACCGTCTCGATCCTCGCTCTGGTGTCTGTTCGGAGTTTCCCGCCACATGCGGGTTTCGAACACAGCTTGGAATATCGAACAAGTATATTTACACCTATTCCCTCGGTATTTATAATCTCCTGTTTCGTTATGATTTGGAGAAAAACGAGTGGGACTGCATCTCTAGCCGTTTCTGGGGTCTCTGGGGCGCTGGTGTGGTGATTTCCGACGACTCCTACTTATTATGCTTTGGCACTATGAAACCCACCGACAAATTCTCCGAGCAGCTTGGTGTTTACGTTTTTGATATTCGCCAGCGTCAGTGGCTAGATGAACCGGTCGAGGGCCTTGATGATGCTCTTCCCGTTATCCCAGACACGGTCAGGGTCTGCTTCATTGCCACAAGTTCACTATCGACCACATCCCCTGCAGCAGCTCCTCTCATCGAACCAACAACCAACCCACCTCCTTTGTTGCGCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

31.19

Weight (kDa)

5.1

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AccII CGCG 1 cut(s) 819
AciI CCGC 3 cut(s) 136, 402, 411
AclWI GGATC 2 cut(s) 163, 365
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 6 cut(s) 219, 380, 411, 535, 683, 718
AgeI ACCGGT 1 cut(s) 676
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 3 cut(s) 427, 628, 776
AluI AGCT 3 cut(s) 427, 628, 776
Alw26I GTCTC 3 cut(s) 335, 371, 545
AlwI GGATC 2 cut(s) 163, 365
AlwNI CAGNNNCTG 1 cut(s) 729
AoxI GGCC 5 cut(s) 56, 78, 137, 312, 685
ApeKI GCWGC 4 cut(s) 318, 625, 770, 773
ApoI RAATTY 1 cut(s) 614
AsiGI ACCGGT 1 cut(s) 676
AspLEI GCGC 2 cut(s) 551, 819
AspS9I GGNCC 3 cut(s) 57, 235, 685
AsuHPI GGTGA 2 cut(s) 353, 571
AsuII TTCGAA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 235
BbvI GCAGC 4 cut(s) 305, 637, 782, 785
BccI CCATC 2 cut(s) 68, 122
BceAI ACGGC 2 cut(s) 149, 513
BcoDI GTCTC 3 cut(s) 335, 371, 545
BfaI CTAG 2 cut(s) 525, 668
BfmI CTRYAG 2 cut(s) 74, 768
BfoI RGCGCY 1 cut(s) 552
BisI GCNGC 5 cut(s) 137, 319, 626, 771, 774
BlsI GCNGC 5 cut(s) 138, 320, 627, 772, 775
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 57, 235, 685
BmsI GCATC 2 cut(s) 528, 685
Bpu14I TTCGAA 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 101
BsaI GGTCTC 2 cut(s) 335, 545
BsaJI CCNNGG 4 cut(s) 81, 140, 342, 463
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 6 cut(s) 219, 380, 411, 535, 683, 718
Bse118I RCCGGY 1 cut(s) 676
Bse3DI GCAATG 2 cut(s) 359, 735
BseDI CCNNGG 4 cut(s) 81, 140, 342, 463
BseGI GGATG 1 cut(s) 761
BseLI CCNNNNNNNGG 6 cut(s) 219, 380, 411, 535, 683, 718
BseMI GCAATG 2 cut(s) 359, 735
BseRI GAGGAG 1 cut(s) 768
BseX3I CGGCCG 1 cut(s) 137
BseXI GCAGC 4 cut(s) 305, 637, 782, 785
Bsh1236I CGCG 1 cut(s) 819
Bsh1285I CGRYCG 2 cut(s) 140, 681
BshFI GGCC 5 cut(s) 58, 80, 139, 314, 687
BshTI ACCGGT 1 cut(s) 676
BsiEI CGRYCG 2 cut(s) 140, 681
BsiSI CCGG 1 cut(s) 677
BslFI GGGAC 3 cut(s) 38, 360, 527
BslI CCNNNNNNNGG 6 cut(s) 219, 380, 411, 535, 683, 718
BsmAI GTCTC 3 cut(s) 335, 371, 545
BsmBI CGTCTC 1 cut(s) 371
BsmFI GGGAC 3 cut(s) 38, 360, 527
BsnI GGCC 5 cut(s) 58, 80, 139, 314, 687
Bso31I GGTCTC 2 cut(s) 335, 545
Bsp119I TTCGAA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 155, 370
BspACI CCGC 3 cut(s) 136, 402, 411
BspANI GGCC 5 cut(s) 58, 80, 139, 314, 687
BspFNI CGCG 1 cut(s) 819
BspMAI CTGCAG 1 cut(s) 772
BspPI GGATC 2 cut(s) 163, 365
BspQI GCTCTTC 1 cut(s) 705
BspT104I TTCGAA 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 335, 545
BsrDI GCAATG 2 cut(s) 359, 735
BsrFI RCCGGY 1 cut(s) 676
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 4 cut(s) 81, 140, 342, 463
BssMI GATC 2 cut(s) 155, 370
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 2 cut(s) 81, 342
Bst4CI ACNGT 3 cut(s) 329, 365, 721
Bst6I CTCTTC 2 cut(s) 156, 705
BstACI GRCGYC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 316, 656
BstF5I GGATG 1 cut(s) 761
BstFNI CGCG 1 cut(s) 819
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 2 cut(s) 551, 819
BstKTI GATC 2 cut(s) 158, 373
BstMAI GTCTC 3 cut(s) 335, 371, 545
BstMBI GATC 2 cut(s) 155, 370
BstMCI CGRYCG 2 cut(s) 140, 681
BstMWI GCNNNNNNNGC 3 cut(s) 142, 525, 664
BstNSI RCATGY 1 cut(s) 411
BstSFI CTRYAG 2 cut(s) 74, 768
BstUI CGCG 1 cut(s) 819
BstV1I GCAGC 4 cut(s) 305, 637, 782, 785
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BstZI CGGCCG 1 cut(s) 137
BsuRI GGCC 5 cut(s) 58, 80, 139, 314, 687
BtsCI GGATG 1 cut(s) 761
BtsIMutI CAGTG 2 cut(s) 157, 668
Cac8I GCNNGC 2 cut(s) 316, 656
CaiI CAGNNNCTG 1 cut(s) 729
CfoI GCGC 2 cut(s) 551, 819
Cfr10I RCCGGY 1 cut(s) 676
Cfr13I GGNCC 3 cut(s) 57, 235, 685
CseI GACGC 2 cut(s) 90, 647
Csp6I GTAC 1 cut(s) 70
CspAI ACCGGT 1 cut(s) 676
CspCI CAANNNNNGTGG 1 cut(s) 792
CviAII CATG 1 cut(s) 408
CviQI GTAC 1 cut(s) 70
DpnI GATC 2 cut(s) 157, 372
DpnII GATC 2 cut(s) 155, 370
EaeI YGGCCR 1 cut(s) 137
EagI CGGCCG 1 cut(s) 137
Eam1104I CTCTTC 2 cut(s) 156, 705
EarI CTCTTC 2 cut(s) 156, 705
EclXI CGGCCG 1 cut(s) 137
Eco130I CCWWGG 2 cut(s) 81, 342
Eco31I GGTCTC 2 cut(s) 335, 545
Eco47I GGWCC 1 cut(s) 235
Eco52I CGGCCG 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 685
EcoT14I CCWWGG 2 cut(s) 81, 342
ErhI CCWWGG 2 cut(s) 81, 342
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 1 cut(s) 411
FaqI GGGAC 3 cut(s) 38, 360, 527
FatI CATG 1 cut(s) 407
FauI CCCGC 2 cut(s) 404, 409
Fnu4HI GCNGC 5 cut(s) 137, 319, 626, 771, 774
FokI GGATG 1 cut(s) 748
Fsp4HI GCNGC 5 cut(s) 137, 319, 626, 771, 774
FspBI CTAG 2 cut(s) 525, 668
GlaI GCGC 2 cut(s) 550, 818
GluI GCNGC 5 cut(s) 137, 319, 626, 771, 774
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 5 cut(s) 58, 80, 139, 314, 687
HapII CCGG 1 cut(s) 677
HgaI GACGC 2 cut(s) 90, 647
HhaI GCGC 2 cut(s) 551, 819
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 1 cut(s) 411
Hin6I GCGC 2 cut(s) 549, 817
HinP1I GCGC 2 cut(s) 549, 817
HinfI GANTC 3 cut(s) 194, 305, 572
HpaII CCGG 1 cut(s) 677
HphI GGTGA 2 cut(s) 353, 571
Hpy166II GTNNAC 2 cut(s) 637, 749
Hpy188I TCNGA 5 cut(s) 160, 277, 394, 568, 622
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 637, 749
Hpy99I CGWCG 2 cut(s) 106, 572
HpyAV CCTTC 3 cut(s) 34, 251, 306
HpyCH4III ACNGT 3 cut(s) 329, 365, 721
HpyCH4IV ACGT 2 cut(s) 20, 639
HpyCH4V TGCA 3 cut(s) 321, 519, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 525, 664
HpySE526I ACGT 2 cut(s) 20, 639
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 1 cut(s) 411
HspAI GCGC 2 cut(s) 549, 817
Kzo9I GATC 2 cut(s) 155, 370
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 4 cut(s) 305, 637, 782, 785
LweI GCATC 2 cut(s) 528, 685
MaeI CTAG 2 cut(s) 525, 668
MaeII ACGT 2 cut(s) 20, 639
MaeIII GTNAC 1 cut(s) 359
MalI GATC 2 cut(s) 157, 372
MboI GATC 2 cut(s) 155, 370
MboII GAAGA 6 cut(s) 43, 46, 49, 137, 173, 692
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 614
MlyI GAGTC 2 cut(s) 314, 566
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 9 cut(s) 135, 208, 259, 275, 384, 473, 676, 789, 816
MspI CCGG 1 cut(s) 677
MvnI CGCG 1 cut(s) 819
MwoI GCNNNNNNNGC 3 cut(s) 142, 525, 664
NdeII GATC 2 cut(s) 155, 370
NlaIII CATG 1 cut(s) 411
NmeAIII GCCGAG 2 cut(s) 77, 165
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 411
NspV TTCGAA 1 cut(s) 418
PciSI GCTCTTC 1 cut(s) 705
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PfeI GAWTC 1 cut(s) 194
PflFI GACNNNGTC 1 cut(s) 719
PinAI ACCGGT 1 cut(s) 676
PkrI GCNGC 5 cut(s) 138, 320, 627, 772, 775
PleI GAGTC 2 cut(s) 313, 566
PpsI GAGTC 2 cut(s) 313, 566
PsiI TTATAA 1 cut(s) 474
PspPI GGNCC 3 cut(s) 57, 235, 685
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 729
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 719
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 705
SatI GCNGC 5 cut(s) 137, 319, 626, 771, 774
Sau3AI GATC 2 cut(s) 155, 370
Sau96I GGNCC 3 cut(s) 57, 235, 685
SchI GAGTC 2 cut(s) 314, 566
SfaNI GCATC 2 cut(s) 528, 685
SfcI CTRYAG 2 cut(s) 74, 768
SfuI TTCGAA 1 cut(s) 418
SinI GGWCC 1 cut(s) 235
Sse9I AATT 1 cut(s) 614
SsiI CCGC 3 cut(s) 136, 402, 411
SspMI CTAG 2 cut(s) 525, 668
StyI CCWWGG 2 cut(s) 81, 342
TaaI ACNGT 3 cut(s) 329, 365, 721
TaiI ACGT 2 cut(s) 23, 642
TaqI TCGA 6 cut(s) 369, 418, 437, 681, 755, 786
TasI AATT 1 cut(s) 614
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 2 cut(s) 157, 668
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 4 cut(s) 318, 625, 770, 773
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 4 cut(s) 279, 614, 687, 724
TspRI CASTG 2 cut(s) 157, 668
Tth111I GACNNNGTC 1 cut(s) 719
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 614
XceI RCATGY 1 cut(s) 411
XspI CTAG 2 cut(s) 525, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.