Rw1G021860

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
46358193 .. 46359793
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021860.1

Sequence Viewer

Length: 1164 bp
ATGGGAAAGAAAAACAAAACGAGGGACAAGAAGAAGAAGAAGAAGGAGGTTGCTTGGGATAGGCCCATCTACCTGTACCTACTGGTCAAGGCAGACGACAACTCGGGGTCGTGTTTATGGTTCGTCATTGAAGATGGACGGCGGCCGAGGCAAATCAGTGGATCTGAAGAGATTGATGATGATGATGATGATGATAAGGTAATCTTCCGTCCCCTAGATCTTCCCGAATTTGATGATGATGACCTGCGCCTTCCTCACGGCGTTGTGGTCCTGGACTCGCGATTATTCATGATTAGTGGATATCAATGTAGAAAGCGAGATTCCTCTGGTGTGAAATCCTATATTGGGTATGATTACTTGGACCTGAAACCCTCCTACGAAGGCAAGGAATGGCGTTCCGAACAAGGGGTTTCATTCCCTTCGCAAGAGTCGTTGGCCTGCTGCAAAGACGGTCTCATCTATACCTTGGGACAGGAATGTTGTCACCGTCTCGATCCTCGCTCTGGTGTCTGTTCGGAGTTTCCCGCCACATGCGGGTTTCGAACACAGCTTGGAATATCGAACAAGTATATTTACACCTATTCCCTCGGTATTTATAATCTCCTGTTTCGTTATGATTTGGAGAAAAACGAGTGGGACTGCATCTCTAGCCGTTTCTGGGGTCTCTGGGGCCCTGGTGTGGTGATTTCCGACGACTCCTACTTATTATGCTTTGGCACTATGAAACCCACCGACAAATTCTCCGAGCAGCTTGGTGTTTACGTTTTTGATATTCGCCAGCGTCAGTGGCTAGATGAACCGGTCCAGGGCCTTGATGATGCTCTTCCCGTTATCCCAGACACGTACGAGCCCTGGGAAAGGCACCTTTACCTCAACAAATTACCGCGCTTGTTCCAAATCGGAACCAAAAAATTTGCTTTCATTTGGGAGGAACGTTTTGTTCAGGGTCAGGGTCTGCTTCATTGCCACAAGTTCACTATCAACCACATCCCCTGCAGCAGCAGCTCTCATCGAACCAACAACCAACCCACCTCCTTTGTTGCCCGAATAGTCTCAAGTGGATTCCTTACTCTGCAAAGCGCTGGATTACTTGGTTGCGCTGTAGGAATTGAATCTTATTCACGAGGCAAAGGAACAGTGGATCGCCTACACCTGAGAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

44.48

Weight (kDa)

6.27

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 861
AccII CGCG 2 cut(s) 280, 886
AciI CCGC 4 cut(s) 142, 525, 534, 884
AclI AACGTT 1 cut(s) 934
AclWI GGATC 3 cut(s) 169, 488, 1149
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 3 cut(s) 227, 737, 911
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 77, 845
AfeI AGCGCT 1 cut(s) 1081
AfiI CCNNNNNNNGG 8 cut(s) 345, 405, 503, 534, 658, 679, 806, 858
AflIII ACRYGT 1 cut(s) 840
AgeI ACCGGT 1 cut(s) 799
AgsI TTSAA 2 cut(s) 131, 1112
AjnI CCWGG 4 cut(s) 270, 673, 804, 851
AluBI AGCT 4 cut(s) 550, 751, 1005, 1161
AluI AGCT 4 cut(s) 550, 751, 1005, 1161
Alw26I GTCTC 4 cut(s) 458, 494, 668, 1057
AlwI GGATC 3 cut(s) 169, 488, 1149
AlwNI CAGNNNCTG 1 cut(s) 955
Ama87I CYCGRG 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 1081
AoxI GGCC 5 cut(s) 62, 143, 435, 670, 808
ApaI GGGCCC 1 cut(s) 674
ApeKI GCWGC 5 cut(s) 441, 748, 996, 999, 1002
ApoI RAATTY 3 cut(s) 227, 737, 911
AsiGI ACCGGT 1 cut(s) 799
AspLEI GCGC 4 cut(s) 249, 888, 1082, 1100
AspS9I GGNCC 7 cut(s) 63, 268, 361, 670, 671, 802, 808
AsuHPI GGTGA 2 cut(s) 476, 694
AsuII TTCGAA 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 103
AvaII GGWCC 3 cut(s) 268, 361, 802
BaeGI GKGCMC 1 cut(s) 674
BanI GGYRCC 1 cut(s) 861
BanII GRGCYC 2 cut(s) 674, 852
BauI CACGAG 1 cut(s) 1122
BbvI GCAGC 5 cut(s) 428, 760, 1008, 1011, 1014
BccI CCATC 2 cut(s) 74, 128
BceAI ACGGC 3 cut(s) 155, 274, 636
BciT130I CCWGG 4 cut(s) 272, 675, 806, 853
BcoDI GTCTC 4 cut(s) 458, 494, 668, 1057
BfaI CTAG 4 cut(s) 215, 648, 791, 1162
BfmI CTRYAG 2 cut(s) 994, 1101
BfoI RGCGCY 1 cut(s) 1083
BfuAI ACCTGC 1 cut(s) 252
BglII AGATCT 1 cut(s) 217
BisI GCNGC 6 cut(s) 143, 442, 749, 997, 1000, 1003
BlsI GCNGC 6 cut(s) 144, 443, 750, 998, 1001, 1004
Bme1390I CCNGG 4 cut(s) 272, 675, 806, 853
Bme18I GGWCC 3 cut(s) 268, 361, 802
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 7 cut(s) 63, 268, 361, 670, 671, 802, 808
BmiI GGNNCC 4 cut(s) 671, 672, 863, 904
BmrFI CCNGG 4 cut(s) 272, 675, 806, 853
BmsI GCATC 2 cut(s) 651, 808
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 1039
BsaAI YACGTR 1 cut(s) 843
BsaI GGTCTC 2 cut(s) 458, 668
BsaJI CCNNGG 7 cut(s) 146, 465, 586, 673, 805, 851, 852
BsaWI WCCGGW 1 cut(s) 799
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 8 cut(s) 345, 405, 503, 534, 658, 679, 806, 858
Bse118I RCCGGY 1 cut(s) 799
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 961
BseBI CCWGG 4 cut(s) 272, 675, 806, 853
BseDI CCNNGG 7 cut(s) 146, 465, 586, 673, 805, 851, 852
BseGI GGATG 1 cut(s) 987
BseLI CCNNNNNNNGG 8 cut(s) 345, 405, 503, 534, 658, 679, 806, 858
BseMI GCAATG 1 cut(s) 961
BseMII CTCAG 1 cut(s) 1145
BseNI ACTGG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 674
BseX3I CGGCCG 1 cut(s) 143
BseXI GCAGC 5 cut(s) 428, 760, 1008, 1011, 1014
Bsh1236I CGCG 2 cut(s) 280, 886
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 5 cut(s) 64, 145, 437, 672, 810
BshNI GGYRCC 1 cut(s) 861
BshTI ACCGGT 1 cut(s) 799
BsiEI CGRYCG 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 800
BsiWI CGTACG 1 cut(s) 843
BslFI GGGAC 4 cut(s) 38, 195, 483, 650
BslI CCNNNNNNNGG 8 cut(s) 345, 405, 503, 534, 658, 679, 806, 858
BsmAI GTCTC 4 cut(s) 458, 494, 668, 1057
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 4 cut(s) 38, 195, 483, 650
BsnI GGCC 5 cut(s) 64, 145, 437, 672, 810
Bso31I GGTCTC 2 cut(s) 458, 668
BsoBI CYCGRG 1 cut(s) 103
Bsp119I TTCGAA 1 cut(s) 541
Bsp120I GGGCCC 1 cut(s) 670
Bsp1286I GDGCHC 2 cut(s) 674, 852
Bsp143I GATC 4 cut(s) 161, 217, 493, 1141
Bsp68I TCGCGA 1 cut(s) 280
BspACI CCGC 4 cut(s) 142, 525, 534, 884
BspANI GGCC 5 cut(s) 64, 145, 437, 672, 810
BspCNI CTCAG 1 cut(s) 1146
BspFNI CGCG 2 cut(s) 280, 886
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 4 cut(s) 671, 672, 863, 904
BspMAI CTGCAG 1 cut(s) 998
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 3 cut(s) 169, 488, 1149
BspQI GCTCTTC 1 cut(s) 828
BspT104I TTCGAA 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 861
BspTNI GGTCTC 2 cut(s) 458, 668
BsrDI GCAATG 1 cut(s) 961
BsrFI RCCGGY 1 cut(s) 799
BsrI ACTGG 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 7 cut(s) 146, 465, 586, 673, 805, 851, 852
BssMI GATC 4 cut(s) 161, 217, 493, 1141
BssSI CACGAG 1 cut(s) 1122
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 1122
Bst2UI CCWGG 4 cut(s) 272, 675, 806, 853
Bst4CI ACNGT 3 cut(s) 452, 488, 1138
Bst6I CTCTTC 2 cut(s) 162, 828
BstBAI YACGTR 1 cut(s) 843
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 439, 779
BstDEI CTNAG 1 cut(s) 1154
BstENI CCTNNNNNAGG 1 cut(s) 856
BstF5I GGATG 1 cut(s) 987
BstFNI CGCG 2 cut(s) 280, 886
BstH2I RGCGCY 1 cut(s) 1083
BstHHI GCGC 4 cut(s) 249, 888, 1082, 1100
BstKTI GATC 4 cut(s) 164, 220, 496, 1144
BstMAI GTCTC 4 cut(s) 458, 494, 668, 1057
BstMBI GATC 4 cut(s) 161, 217, 493, 1141
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 4 cut(s) 148, 648, 787, 1002
BstNI CCWGG 4 cut(s) 272, 675, 806, 853
BstNSI RCATGY 1 cut(s) 534
BstSCI CCNGG 4 cut(s) 270, 673, 804, 851
BstSFI CTRYAG 2 cut(s) 994, 1101
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 2 cut(s) 280, 886
BstV1I GCAGC 5 cut(s) 428, 760, 1008, 1011, 1014
BstX2I RGATCY 2 cut(s) 161, 217
BstYI RGATCY 2 cut(s) 161, 217
BstZI CGGCCG 1 cut(s) 143
BsuRI GGCC 5 cut(s) 64, 145, 437, 672, 810
BtsCI GGATG 1 cut(s) 987
BtsIMutI CAGTG 3 cut(s) 163, 791, 1143
BtuMI TCGCGA 1 cut(s) 280
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 439, 779
CaiI CAGNNNCTG 1 cut(s) 955
CciI TCATGA 1 cut(s) 288
CfoI GCGC 4 cut(s) 249, 888, 1082, 1100
Cfr10I RCCGGY 1 cut(s) 799
Cfr13I GGNCC 7 cut(s) 63, 268, 361, 670, 671, 802, 808
CseI GACGC 1 cut(s) 770
Csp6I GTAC 2 cut(s) 76, 844
CspAI ACCGGT 1 cut(s) 799
CspCI CAANNNNNGTGG 2 cut(s) 1018, 1053
CviAII CATG 2 cut(s) 289, 531
CviQI GTAC 2 cut(s) 76, 844
DdeI CTNAG 1 cut(s) 1154
DpnI GATC 4 cut(s) 163, 219, 495, 1143
DpnII GATC 4 cut(s) 161, 217, 493, 1141
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
Eam1104I CTCTTC 2 cut(s) 162, 828
EarI CTCTTC 2 cut(s) 162, 828
EclXI CGGCCG 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 2 cut(s) 674, 852
Eco31I GGTCTC 2 cut(s) 458, 668
Eco32I GATATC 1 cut(s) 302
Eco47I GGWCC 3 cut(s) 268, 361, 802
Eco47III AGCGCT 1 cut(s) 1081
Eco52I CGGCCG 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 856
EcoO109I RGGNCCY 3 cut(s) 670, 671, 808
EcoRII CCWGG 4 cut(s) 270, 673, 804, 851
EcoRV GATATC 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 674, 852
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 2 cut(s) 292, 534
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 4 cut(s) 38, 195, 483, 650
FatI CATG 2 cut(s) 288, 530
FauI CCCGC 2 cut(s) 527, 532
Fnu4HI GCNGC 6 cut(s) 143, 442, 749, 997, 1000, 1003
FokI GGATG 1 cut(s) 974
FriOI GRGCYC 2 cut(s) 674, 852
Fsp4HI GCNGC 6 cut(s) 143, 442, 749, 997, 1000, 1003
FspBI CTAG 4 cut(s) 215, 648, 791, 1162
GlaI GCGC 4 cut(s) 248, 887, 1081, 1099
GluI GCNGC 6 cut(s) 143, 442, 749, 997, 1000, 1003
HaeII RGCGCY 1 cut(s) 1083
HaeIII GGCC 5 cut(s) 64, 145, 437, 672, 810
HapII CCGG 1 cut(s) 800
HgaI GACGC 1 cut(s) 770
HhaI GCGC 4 cut(s) 249, 888, 1082, 1100
Hin1II CATG 2 cut(s) 292, 534
Hin6I GCGC 4 cut(s) 247, 886, 1080, 1098
HinP1I GCGC 4 cut(s) 247, 886, 1080, 1098
HinfI GANTC 6 cut(s) 275, 320, 428, 695, 1062, 1112
HpaII CCGG 1 cut(s) 800
HphI GGTGA 2 cut(s) 476, 694
Hpy166II GTNNAC 2 cut(s) 760, 975
Hpy188I TCNGA 6 cut(s) 166, 400, 517, 691, 745, 902
Hpy188III TCNNGA 5 cut(s) 224, 279, 289, 491, 1122
Hpy8I GTNNAC 2 cut(s) 760, 975
Hpy99I CGWCG 1 cut(s) 695
HpyAV CCTTC 4 cut(s) 37, 260, 374, 429
HpyCH4III ACNGT 3 cut(s) 452, 488, 1138
HpyCH4IV ACGT 3 cut(s) 762, 842, 934
HpyCH4V TGCA 4 cut(s) 444, 642, 996, 1075
HpyF10VI GCNNNNNNNGC 4 cut(s) 148, 648, 787, 1002
HpyF3I CTNAG 1 cut(s) 1154
HpySE526I ACGT 3 cut(s) 762, 842, 934
Hsp92II CATG 2 cut(s) 292, 534
HspAI GCGC 4 cut(s) 247, 886, 1080, 1098
Kzo9I GATC 4 cut(s) 161, 217, 493, 1141
LguI GCTCTTC 1 cut(s) 828
Lsp1109I GCAGC 5 cut(s) 428, 760, 1008, 1011, 1014
LweI GCATC 2 cut(s) 651, 808
MaeI CTAG 4 cut(s) 215, 648, 791, 1162
MaeII ACGT 3 cut(s) 762, 842, 934
MaeIII GTNAC 1 cut(s) 482
MalI GATC 4 cut(s) 163, 219, 495, 1143
MboI GATC 4 cut(s) 161, 217, 493, 1141
MboII GAAGA 9 cut(s) 43, 46, 49, 52, 143, 179, 196, 212, 815
MflI RGATCY 2 cut(s) 161, 217
MhlI GDGCHC 2 cut(s) 674, 852
MluCI AATT 5 cut(s) 227, 737, 878, 911, 1107
MlyI GAGTC 3 cut(s) 269, 437, 689
MmeI TCCRAC 1 cut(s) 714
MspI CCGG 1 cut(s) 800
MspR9I CCNGG 4 cut(s) 272, 675, 806, 853
MvaI CCWGG 4 cut(s) 272, 675, 806, 853
MvnI CGCG 2 cut(s) 280, 886
MwoI GCNNNNNNNGC 4 cut(s) 148, 648, 787, 1002
NdeII GATC 4 cut(s) 161, 217, 493, 1141
NlaIII CATG 2 cut(s) 292, 534
NlaIV GGNNCC 4 cut(s) 671, 672, 863, 904
NmeAIII GCCGAG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 482
NruI TCGCGA 1 cut(s) 280
NspI RCATGY 1 cut(s) 534
NspV TTCGAA 1 cut(s) 541
PagI TCATGA 1 cut(s) 288
PasI CCCWGGG 1 cut(s) 852
PciSI GCTCTTC 1 cut(s) 828
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 3 cut(s) 320, 1062, 1112
Pfl23II CGTACG 1 cut(s) 843
PfoI TCCNGGA 1 cut(s) 270
PinAI ACCGGT 1 cut(s) 799
PkrI GCNGC 6 cut(s) 144, 443, 750, 998, 1001, 1004
PleI GAGTC 3 cut(s) 269, 436, 689
PpsI GAGTC 3 cut(s) 269, 436, 689
Ppu21I YACGTR 1 cut(s) 843
PsiI TTATAA 1 cut(s) 597
Psp1406I AACGTT 1 cut(s) 934
Psp6I CCWGG 4 cut(s) 270, 673, 804, 851
PspGI CCWGG 4 cut(s) 270, 673, 804, 851
PspLI CGTACG 1 cut(s) 843
PspN4I GGNNCC 4 cut(s) 671, 672, 863, 904
PspOMI GGGCCC 1 cut(s) 670
PspPI GGNCC 7 cut(s) 63, 268, 361, 670, 671, 802, 808
PstI CTGCAG 1 cut(s) 998
PstNI CAGNNNCTG 1 cut(s) 955
PsuI RGATCY 2 cut(s) 161, 217
RruI TCGCGA 1 cut(s) 280
RsaI GTAC 2 cut(s) 77, 845
RsaNI GTAC 2 cut(s) 76, 844
SapI GCTCTTC 1 cut(s) 828
SatI GCNGC 6 cut(s) 143, 442, 749, 997, 1000, 1003
Sau3AI GATC 4 cut(s) 161, 217, 493, 1141
Sau96I GGNCC 7 cut(s) 63, 268, 361, 670, 671, 802, 808
SchI GAGTC 3 cut(s) 269, 437, 689
ScrFI CCNGG 4 cut(s) 272, 675, 806, 853
SduI GDGCHC 2 cut(s) 674, 852
SfaNI GCATC 2 cut(s) 651, 808
SfcI CTRYAG 2 cut(s) 994, 1101
SfuI TTCGAA 1 cut(s) 541
SinI GGWCC 3 cut(s) 268, 361, 802
SmlI CTYRAG 1 cut(s) 1054
SmoI CTYRAG 1 cut(s) 1054
Sse9I AATT 5 cut(s) 227, 737, 878, 911, 1107
SsiI CCGC 4 cut(s) 142, 525, 534, 884
SspMI CTAG 4 cut(s) 215, 648, 791, 1162
StyD4I CCNGG 4 cut(s) 270, 673, 804, 851
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 452, 488, 1138
TaiI ACGT 3 cut(s) 765, 845, 937
TaqI TCGA 4 cut(s) 492, 541, 560, 1012
TasI AATT 5 cut(s) 227, 737, 878, 911, 1107
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 3 cut(s) 320, 1062, 1112
TscAI CASTG 3 cut(s) 163, 791, 1143
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 5 cut(s) 441, 748, 996, 999, 1002
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 6 cut(s) 277, 402, 737, 810, 910, 950
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 3 cut(s) 163, 791, 1143
VpaK11BI GGWCC 3 cut(s) 268, 361, 802
XagI CCTNNNNNAGG 1 cut(s) 856
XapI RAATTY 3 cut(s) 227, 737, 911
XceI RCATGY 1 cut(s) 534
XspI CTAG 4 cut(s) 215, 648, 791, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.