Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Reverse (-)

46613976 .. 46615023

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0348300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAAAGAAGGAACTCGTCCAGGAACCAAAGTTCAAATGCTTCTGCAGGCAGGAGTTCGCAACGCAGAAAGCTCTCGATGAACACCTCGACTCTAGTAAACCTTACAAAGCCTATCGTGATAAGGGACACGACCAATCCAAAAGAAAGGCAGGTCTGCATCTCCGAAGGAAGTTTAGGTTGATCACAATACAACTGAGGAATGCCAAGGAGAAGGCAGAGGCTGCTGAAACTGGAGGAAATTCGAATGCCAAAAAGAAAGGAGGGACTGGACCTTGCAAAGCCTATCGTGATAAGGGACACGACCAATTCAAAAGAAAGGCGGGTCTGCGTCTCCGGAGGAAGTTTAGGTTGATCACAATACAACTGAGGAATGCTAAGGAGAAGGCAGAGGCTGCTGAAATTGGAGGAAATTCGAATGCCAAGAAGAAAGGGGGAAGGGAAAGGGAAAGGGGGAGGCCGACCGCTAAGGCTGAGAAGGAAGAAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.74

Weight (kDa)

10.27

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	336
AciI	CCGC	2 cut(s)	323, 465
AcsI	RAATTY	2 cut(s)	241, 412
AgsI	TTSAA	2 cut(s)	37, 313
AjnI	CCWGG	1 cut(s)	21
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	338
AlwNI	CAGNNNCTG	2 cut(s)	224, 395
Aor13HI	TCCGGA	1 cut(s)	336
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	2 cut(s)	224, 395
ApoI	RAATTY	2 cut(s)	241, 412
AspS9I	GGNCC	1 cut(s)	272
AsuII	TTCGAA	2 cut(s)	245, 416
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	211, 382
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	2 cut(s)	183, 354
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	225, 396
BlsI	GCNGC	2 cut(s)	226, 397
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	2 cut(s)	378, 468
Bpu14I	TTCGAA	2 cut(s)	245, 416
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	336
Bse1I	ACTGG	2 cut(s)	238, 274
BseAI	TCCGGA	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	188, 359, 465
BseNI	ACTGG	2 cut(s)	238, 274
BseXI	GCAGC	2 cut(s)	211, 382
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	460
BsiEI	CGRYCG	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	3 cut(s)	141, 280, 312
BsmAI	GTCTC	1 cut(s)	338
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	3 cut(s)	141, 280, 312
BsmI	GAATGC	4 cut(s)	208, 253, 379, 424
BsnI	GGCC	1 cut(s)	460
Bsp119I	TTCGAA	2 cut(s)	245, 416
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	183, 354
BspACI	CCGC	2 cut(s)	323, 465
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	3 cut(s)	189, 360, 466
BspEI	TCCGGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	143
BspT104I	TTCGAA	2 cut(s)	245, 416
BsrI	ACTGG	2 cut(s)	238, 274
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	183, 354
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	2 cut(s)	224, 395
BstBI	TTCGAA	2 cut(s)	245, 416
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	5 cut(s)	197, 368, 378, 468, 474
BstKTI	GATC	2 cut(s)	186, 357
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	183, 354
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 395
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	211, 382
BsuRI	GGCC	1 cut(s)	460
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	2 cut(s)	224, 395
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	320
CviJI	RGCY	7 cut(s)	74, 113, 224, 284, 395, 460, 473
CviKI_1	RGCY	7 cut(s)	74, 113, 224, 284, 395, 460, 473
DdeI	CTNAG	5 cut(s)	197, 368, 378, 468, 474
DpnI	GATC	2 cut(s)	185, 356
DpnII	GATC	2 cut(s)	183, 354
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
Esp3I	CGTCTC	1 cut(s)	338
FaqI	GGGAC	3 cut(s)	141, 280, 312
FauI	CCCGC	1 cut(s)	316
FbaI	TGATCA	2 cut(s)	183, 354
Fnu4HI	GCNGC	2 cut(s)	225, 396
Fsp4HI	GCNGC	2 cut(s)	225, 396
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	2 cut(s)	225, 396
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	460
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	1 cut(s)	320
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	4 cut(s)	77, 119, 290, 337
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	6 cut(s)	4, 162, 208, 379, 432, 472
HpyCH4V	TGCA	3 cut(s)	48, 160, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 395
HpyF3I	CTNAG	5 cut(s)	197, 368, 378, 468, 474
Kpn2I	TCCGGA	1 cut(s)	336
Ksp22I	TGATCA	2 cut(s)	183, 354
Kzo9I	GATC	2 cut(s)	183, 354
LpnPI	CCDG	8 cut(s)	8, 34, 35, 38, 138, 219, 255, 350
Lsp1109I	GCAGC	2 cut(s)	211, 382
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	96
MalI	GATC	2 cut(s)	185, 356
MboI	GATC	2 cut(s)	183, 354
MboII	GAAGA	2 cut(s)	439, 494
MluCI	AATT	4 cut(s)	241, 308, 402, 412
MlyI	GAGTC	1 cut(s)	86
MroI	TCCGGA	1 cut(s)	336
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	4 cut(s)	208, 253, 379, 424
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	224, 395
NdeII	GATC	2 cut(s)	183, 354
NlaIV	GGNNCC	1 cut(s)	27
NspV	TTCGAA	2 cut(s)	245, 416
PctI	GAATGC	4 cut(s)	208, 253, 379, 424
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	226, 397
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	50
PstNI	CAGNNNCTG	2 cut(s)	224, 395
SatI	GCNGC	2 cut(s)	225, 396
Sau3AI	GATC	2 cut(s)	183, 354
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	23
SetI	ASST	7 cut(s)	76, 90, 106, 157, 182, 277, 353
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	46
SfuI	TTCGAA	2 cut(s)	245, 416
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	4 cut(s)	241, 308, 402, 412
SsiI	CCGC	2 cut(s)	323, 465
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	207
TaqI	TCGA	4 cut(s)	78, 90, 245, 416
TasI	AATT	4 cut(s)	241, 308, 402, 412
TseI	GCWGC	2 cut(s)	224, 395
TspDTI	ATGAA	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	241, 412
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.