FvH4_7g21682

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001936
Physical Location & Seq
Forward (+)
17280329 .. 17282084
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21682.t1

Sequence Viewer

Length: 1140 bp
ATGGGAATCGGAGGGATTGCAAGCGACGTCAAGAATGCGAGGGACAGTCCCTTGTACGTTCTGGTTCGTGAGGGCGATTCGTCGTTATGGTTCGTAATCGAGGATGGACGCGAGCAACAACAACACCAACAAGAAGAAGAATCTGAAAAGGCCAAAATTGGATCCGATGATGATATAATCTTTCGTCGACTTGGTCTTCCCAAGTTAAGCTACCAGCGTTTTCCACGCAGCCTTCTGGTCATCAACTCTAAATTATACATGATCGGTGGTTCTAAAAGTAGTGATAGACCTTGCCGTCCGTTACGGGAAGGGGAAATTCAGTTCTTACAAACGGAACCGGCCAGGGAATATGAGTACTTGGACTTTCAAGAACGAACGTTGCGTTGGCGTCGCCAGTACTTTGGTAAATATCACCCTGGCTGTCAGCATTTGGCTTCCTCCAAAGATGGTTTGATCTATGGCTTTGGACCTCAGTCTTACATAATGAATCCTTCTCGCCGCCCTCGTAATGTCGTCGCTACTGAACCGCTGCCTAGAATGATTGGAGAATATGCTCACGCCCCACAGCCTCTTGCTATTTCTAACAACAAGATTTACGCCTATGGCCGCGCAGGTATCTTGCCGCACTATTTGTTTAGTTATGATATAGAAGAGAAAAGGTGGGAGTGCCTCTGTAAACATTTTTGGGGTGAATGGGCAACTGGAGTGGTGCTTTCCGGAGACTCCTACTTAATCGCTTTTGGCTCAAGGCACCCCATTAAGGGGGATATGGAGAGGCCCGGTTTATGGGTGTTTGATATTAACCGGCGTCAATGGCTGGATGAACCCATTGAGGGCCTTGATGAGGCGCTTCCAGTTATCCCAGACTGGGTCCATGACGAAGTGGGATACGTTTATGTGTACTACTTACCGTGCTTGTTCCAAGTCGGAAAGGACAGGTTTGCTCTGATTTGGGAGGAATCGGGTAATGAGAGTTATAAGCTTCATTGCCACAAATTCACATTGCAGGCTCCTGCCTCTGCTGATCAACCTTTTGTTGCTCGACAACTCTCAAATCAAGTCAAAATTCTCAATGGCGGCAACAACAAAATACTCGGCTGCACTGTTGCATTGGAAACTGAACAAGGAAGAGAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

43.6

Weight (kDa)

6.1

Isoelectric Point (pI)

62.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 978
AasI GACNNNNNNGTC 1 cut(s) 294
AatII GACGTC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 750
AccI GTMKAC 1 cut(s) 187
AccII CGCG 2 cut(s) 111, 609
AccIII TCCGGA 1 cut(s) 716
AciI CCGC 5 cut(s) 499, 527, 607, 623, 1077
AclI AACGTT 1 cut(s) 377
AclWI GGATC 2 cut(s) 156, 169
AcoI YGGCCR 2 cut(s) 339, 604
AcsI RAATTY 3 cut(s) 315, 995, 1065
AcyI GRCGYC 3 cut(s) 27, 388, 808
AfaI GTAC 4 cut(s) 56, 356, 398, 902
AfiI CCNNNNNNNGG 7 cut(s) 760, 761, 762, 786, 833, 844, 868
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 2 cut(s) 341, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 367, 399
AloI GAACNNNNNNTCC 2 cut(s) 305, 337
AluBI AGCT 2 cut(s) 210, 982
AluI AGCT 2 cut(s) 210, 982
Alw26I GTCTC 1 cut(s) 714
AlwI GGATC 2 cut(s) 156, 169
Aor13HI TCCGGA 1 cut(s) 716
AoxI GGCC 5 cut(s) 150, 339, 604, 776, 835
ApeKI GCWGC 3 cut(s) 228, 529, 1098
ApoI RAATTY 3 cut(s) 315, 995, 1065
AspLEI GCGC 2 cut(s) 611, 850
AspS9I GGNCC 4 cut(s) 467, 777, 835, 871
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 2 cut(s) 404, 701
AvaII GGWCC 2 cut(s) 467, 871
BamHI GGATCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 188
BbvI GCAGC 3 cut(s) 240, 516, 1085
BccI CCATC 2 cut(s) 98, 440
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 2 cut(s) 343, 417
BciVI GTATCC 1 cut(s) 881
BclI TGATCA 1 cut(s) 1024
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 851
BfuAI ACCTGC 1 cut(s) 602
BfuI GTATCC 1 cut(s) 881
BisI GCNGC 7 cut(s) 229, 499, 530, 607, 623, 1078, 1099
BlsI GCNGC 7 cut(s) 230, 500, 531, 608, 624, 1079, 1100
BmcAI AGTACT 2 cut(s) 356, 398
Bme1390I CCNGG 3 cut(s) 343, 417, 780
Bme18I GGWCC 2 cut(s) 467, 871
BmgT120I GGNCC 4 cut(s) 467, 777, 835, 871
BmiI GGNNCC 5 cut(s) 163, 336, 752, 872, 1011
BmrFI CCNGG 3 cut(s) 343, 417, 780
BmrI ACTGGG 1 cut(s) 877
BmuI ACTGGG 1 cut(s) 877
BoxI GACNNNNGTC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 188
BpmI CTGGAG 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 730
BpuMI CCSGG 1 cut(s) 780
BsaHI GRCGYC 3 cut(s) 27, 388, 808
BsaJI CCNNGG 2 cut(s) 342, 415
BsaWI WCCGGW 1 cut(s) 716
Bsc4I CCNNNNNNNGG 7 cut(s) 760, 761, 762, 786, 833, 844, 868
Bse118I RCCGGY 2 cut(s) 337, 804
Bse1I ACTGG 4 cut(s) 394, 706, 854, 872
Bse3DI GCAATG 2 cut(s) 985, 1001
BseAI TCCGGA 1 cut(s) 716
BseBI CCWGG 2 cut(s) 343, 417
BseDI CCNNGG 2 cut(s) 342, 415
BseGI GGATG 2 cut(s) 109, 826
BseLI CCNNNNNNNGG 7 cut(s) 760, 761, 762, 786, 833, 844, 868
BseMI GCAATG 2 cut(s) 985, 1001
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 4 cut(s) 394, 706, 854, 872
BseXI GCAGC 3 cut(s) 240, 516, 1085
BsgI GTGCAG 1 cut(s) 1084
Bsh1236I CGCG 2 cut(s) 111, 609
BshFI GGCC 5 cut(s) 152, 341, 606, 778, 837
BshNI GGYRCC 1 cut(s) 750
BsiSI CCGG 4 cut(s) 338, 717, 780, 805
BslFI GGGAC 2 cut(s) 33, 56
BslI CCNNNNNNNGG 7 cut(s) 760, 761, 762, 786, 833, 844, 868
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 2 cut(s) 33, 56
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 5 cut(s) 152, 341, 606, 778, 837
Bsp13I TCCGGA 1 cut(s) 716
Bsp143I GATC 4 cut(s) 161, 261, 453, 1024
BspACI CCGC 5 cut(s) 499, 527, 607, 623, 1077
BspANI GGCC 5 cut(s) 152, 341, 606, 778, 837
BspCNI CTCAG 1 cut(s) 484
BspEI TCCGGA 1 cut(s) 716
BspFNI CGCG 2 cut(s) 111, 609
BspLI GGNNCC 5 cut(s) 163, 336, 752, 872, 1011
BspMI ACCTGC 1 cut(s) 602
BspPI GGATC 2 cut(s) 156, 169
BspT107I GGYRCC 1 cut(s) 750
BsrDI GCAATG 2 cut(s) 985, 1001
BsrFI RCCGGY 2 cut(s) 337, 804
BsrI ACTGG 4 cut(s) 394, 706, 854, 872
BssAI RCCGGY 2 cut(s) 337, 804
BssECI CCNNGG 2 cut(s) 342, 415
BssMI GATC 4 cut(s) 161, 261, 453, 1024
BssNI GRCGYC 3 cut(s) 27, 388, 808
Bst2UI CCWGG 2 cut(s) 343, 417
Bst4CI ACNGT 3 cut(s) 47, 912, 1105
Bst6I CTCTTC 2 cut(s) 645, 1123
BstACI GRCGYC 3 cut(s) 27, 388, 808
BstC8I GCNNGC 3 cut(s) 22, 113, 1008
BstDEI CTNAG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 842
BstF5I GGATG 2 cut(s) 109, 826
BstFNI CGCG 2 cut(s) 111, 609
BstH2I RGCGCY 1 cut(s) 851
BstHHI GCGC 2 cut(s) 611, 850
BstKTI GATC 4 cut(s) 164, 264, 456, 1027
BstMAI GTCTC 1 cut(s) 714
BstMBI GATC 4 cut(s) 161, 261, 453, 1024
BstMWI GCNNNNNNNGC 1 cut(s) 814
BstNI CCWGG 2 cut(s) 343, 417
BstPAI GACNNNNGTC 1 cut(s) 472
BstSCI CCNGG 3 cut(s) 341, 415, 778
BstUI CGCG 2 cut(s) 111, 609
BstV1I GCAGC 3 cut(s) 240, 516, 1085
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 161
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 1 cut(s) 161
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 5 cut(s) 152, 341, 606, 778, 837
BtsCI GGATG 2 cut(s) 109, 826
BtsIMutI CAGTG 1 cut(s) 1101
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 3 cut(s) 22, 113, 1008
CfoI GCGC 2 cut(s) 611, 850
Cfr10I RCCGGY 2 cut(s) 337, 804
Cfr13I GGNCC 4 cut(s) 467, 777, 835, 871
CseI GACGC 3 cut(s) 117, 377, 797
Csp6I GTAC 4 cut(s) 55, 355, 397, 901
CspCI CAANNNNNGTGG 2 cut(s) 687, 722
CviAII CATG 2 cut(s) 259, 875
CviQI GTAC 4 cut(s) 55, 355, 397, 901
DdeI CTNAG 1 cut(s) 471
DpnI GATC 4 cut(s) 163, 263, 455, 1026
DpnII GATC 4 cut(s) 161, 261, 453, 1024
DrdI GACNNNNNNGTC 1 cut(s) 294
DseDI GACNNNNNNGTC 1 cut(s) 294
EaeI YGGCCR 2 cut(s) 339, 604
Eam1104I CTCTTC 2 cut(s) 645, 1123
EarI CTCTTC 2 cut(s) 645, 1123
Eco47I GGWCC 2 cut(s) 467, 871
EcoNI CCTNNNNNAGG 1 cut(s) 842
EcoO109I RGGNCCY 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 341, 415
FaeI CATG 2 cut(s) 262, 878
FaqI GGGAC 2 cut(s) 33, 56
FatI CATG 2 cut(s) 258, 874
FbaI TGATCA 1 cut(s) 1024
FblI GTMKAC 1 cut(s) 187
Fnu4HI GCNGC 7 cut(s) 229, 499, 530, 607, 623, 1078, 1099
FokI GGATG 2 cut(s) 116, 833
Fsp4HI GCNGC 7 cut(s) 229, 499, 530, 607, 623, 1078, 1099
FspBI CTAG 1 cut(s) 534
GlaI GCGC 2 cut(s) 610, 849
GluI GCNGC 7 cut(s) 229, 499, 530, 607, 623, 1078, 1099
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 851
HaeIII GGCC 5 cut(s) 152, 341, 606, 778, 837
HapII CCGG 4 cut(s) 338, 717, 780, 805
HgaI GACGC 3 cut(s) 117, 377, 797
HhaI GCGC 2 cut(s) 611, 850
Hin1I GRCGYC 3 cut(s) 27, 388, 808
Hin1II CATG 2 cut(s) 262, 878
Hin6I GCGC 2 cut(s) 609, 848
HinP1I GCGC 2 cut(s) 609, 848
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 980
HinfI GANTC 6 cut(s) 6, 77, 140, 487, 722, 959
HpaII CCGG 4 cut(s) 338, 717, 780, 805
HphI GGTGA 2 cut(s) 404, 701
Hpy166II GTNNAC 3 cut(s) 188, 677, 901
Hpy188I TCNGA 5 cut(s) 11, 145, 166, 929, 948
Hpy188III TCNNGA 4 cut(s) 31, 68, 368, 717
Hpy8I GTNNAC 3 cut(s) 188, 677, 901
Hpy99I CGWCG 5 cut(s) 29, 85, 189, 393, 518
HpyAV CCTTC 3 cut(s) 242, 302, 501
HpyCH4III ACNGT 3 cut(s) 47, 912, 1105
HpyCH4IV ACGT 4 cut(s) 27, 57, 377, 891
HpyCH4V TGCA 4 cut(s) 20, 1006, 1101, 1109
HpyF10VI GCNNNNNNNGC 1 cut(s) 814
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 4 cut(s) 27, 57, 377, 891
Hsp92I GRCGYC 3 cut(s) 27, 388, 808
Hsp92II CATG 2 cut(s) 262, 878
HspAI GCGC 2 cut(s) 609, 848
Kpn2I TCCGGA 1 cut(s) 716
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 4 cut(s) 161, 261, 453, 1024
LmnI GCTCC 1 cut(s) 1015
Lsp1109I GCAGC 3 cut(s) 240, 516, 1085
MaeI CTAG 1 cut(s) 534
MaeII ACGT 4 cut(s) 27, 57, 377, 891
MaeIII GTNAC 1 cut(s) 300
MalI GATC 4 cut(s) 163, 263, 455, 1026
MboI GATC 4 cut(s) 161, 261, 453, 1024
MboII GAAGA 5 cut(s) 146, 149, 188, 662, 1140
MflI RGATCY 1 cut(s) 161
MluCI AATT 5 cut(s) 156, 251, 315, 995, 1065
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 907
MroI TCCGGA 1 cut(s) 716
MseI TTAA 4 cut(s) 206, 731, 759, 801
MspA1I CMGCKG 1 cut(s) 529
MspI CCGG 4 cut(s) 338, 717, 780, 805
MspR9I CCNGG 3 cut(s) 343, 417, 780
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 2 cut(s) 343, 417
MvnI CGCG 2 cut(s) 111, 609
MwoI GCNNNNNNNGC 1 cut(s) 814
NciI CCSGG 1 cut(s) 780
NdeII GATC 4 cut(s) 161, 261, 453, 1024
NlaIII CATG 2 cut(s) 262, 878
NlaIV GGNNCC 5 cut(s) 163, 336, 752, 872, 1011
NmeAIII GCCGAG 1 cut(s) 1074
PcsI WCGNNNNNNNCGW 2 cut(s) 379, 502
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 5 cut(s) 6, 77, 140, 487, 959
PflFI GACNNNGTC 2 cut(s) 192, 869
PkrI GCNGC 7 cut(s) 230, 500, 531, 608, 624, 1079, 1100
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
PshAI GACNNNNGTC 1 cut(s) 472
PsiI TTATAA 1 cut(s) 978
Psp1406I AACGTT 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 341, 415
PspGI CCWGG 2 cut(s) 341, 415
PspN4I GGNNCC 5 cut(s) 163, 336, 752, 872, 1011
PspPI GGNCC 4 cut(s) 467, 777, 835, 871
PsuI RGATCY 1 cut(s) 161
PsyI GACNNNGTC 2 cut(s) 192, 869
RsaI GTAC 4 cut(s) 56, 356, 398, 902
RsaNI GTAC 4 cut(s) 55, 355, 397, 901
SalI GTCGAC 1 cut(s) 186
SaqAI TTAA 4 cut(s) 206, 731, 759, 801
SatI GCNGC 7 cut(s) 229, 499, 530, 607, 623, 1078, 1099
Sau3AI GATC 4 cut(s) 161, 261, 453, 1024
Sau96I GGNCC 4 cut(s) 467, 777, 835, 871
ScaI AGTACT 2 cut(s) 356, 398
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 3 cut(s) 343, 417, 780
SinI GGWCC 2 cut(s) 467, 871
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 5 cut(s) 156, 251, 315, 995, 1065
SsiI CCGC 5 cut(s) 499, 527, 607, 623, 1077
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 341, 415, 778
TaaI ACNGT 3 cut(s) 47, 912, 1105
TaiI ACGT 4 cut(s) 30, 60, 380, 894
TaqI TCGA 3 cut(s) 99, 187, 1042
TasI AATT 5 cut(s) 156, 251, 315, 995, 1065
TatI WGTACW 3 cut(s) 354, 396, 900
TauI GCSGC 4 cut(s) 501, 609, 625, 1080
TfiI GAWTC 5 cut(s) 6, 77, 140, 487, 959
Tru1I TTAA 4 cut(s) 206, 731, 759, 801
Tru9I TTAA 4 cut(s) 206, 731, 759, 801
TscAI CASTG 1 cut(s) 1108
TseI GCWGC 3 cut(s) 228, 529, 1098
TspDTI ATGAA 3 cut(s) 500, 837, 974
TspGWI ACGGA 2 cut(s) 288, 347
TspRI CASTG 1 cut(s) 1108
Tth111I GACNNNGTC 2 cut(s) 192, 869
VpaK11BI GGWCC 2 cut(s) 467, 871
XagI CCTNNNNNAGG 1 cut(s) 842
XapI RAATTY 3 cut(s) 315, 995, 1065
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 1 cut(s) 534
ZraI GACGTC 1 cut(s) 28
ZrmI AGTACT 2 cut(s) 356, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.