Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Reverse (-)

33016766 .. 33017458

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g42282.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGAGGAGTACTTCTGTCTCGCAGTCGGTCAAAGAAGAGAAAAGTTGATCGAAACTATGATTTGTTCGAAAGGGAGAAGATGGGAACGATGGAGAGGACGGGAACAAGAGAGGAGAAGAAGGTTGCTGAGTGGAACAGACCGATTTACCTACAGGTTAGGGCCGAAGACAAGTCGCGTTTATGGTTCGTAATTGAGGACGGACGGCGGCCAAGGGAACAAGGATCTGAAGTCGCTTGGCTCCCGGAGTGGTGCTCTACGGTGACTCCTACTTACGTCAGTGGCTCGATTAACCTGTCAAGGGCCTTGATGATGCTCTTCCGGTTATCCCAGAAGGGTTCGAGGAGGACCGCGTTTACAACTACTTTTTACCGCTCTTATTCCAAATTGGAACCGAAAGGTTTGCTTTGGTTTGGGACGATTATTTGGAAAATGTCGGTTGCGAGCTTCATTGCCACAAATTCACATTCGACTACACTCCCAGCAGCGGCAGCGATTGCGCGCACTACCGAAAAGAATCAACAACCATCCTCAGTTGTTGCTCGGAGACTCTCAAATGGAGTCCTTATTCAGCAAGACGGCACATTACTTGGTTACACTGTAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.15

Weight (kDa)

10.36

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	375
AccII	CGCG	3 cut(s)	178, 353, 502
AciI	CCGC	4 cut(s)	208, 351, 373, 488
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	12
AfiI	CCNNNNNNNGG	2 cut(s)	301, 487
AluBI	AGCT	1 cut(s)	447
AluI	AGCT	1 cut(s)	447
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	24, 541
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	162, 209, 303
ApeKI	GCWGC	2 cut(s)	485, 491
ApoI	RAATTY	1 cut(s)	460
AspLEI	GCGC	2 cut(s)	502, 504
AspS9I	GGNCC	3 cut(s)	162, 303, 348
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	274
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	497, 503
BccI	CCATC	3 cut(s)	76, 85, 535
BceAI	ACGGC	2 cut(s)	221, 595
BcgI	CGANNNNNNTGC	2 cut(s)	385, 419
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	24, 541
BfmI	CTRYAG	2 cut(s)	152, 600
BisI	GCNGC	4 cut(s)	209, 486, 489, 492
BlsI	GCNGC	4 cut(s)	210, 487, 490, 493
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	3 cut(s)	162, 303, 348
BmiI	GGNNCC	2 cut(s)	242, 393
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu14I	TTCGAA	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 487
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	527
BseLI	CCNNNNNNNGG	2 cut(s)	301, 487
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	120, 546
BsePI	GCGCGC	1 cut(s)	500
BseRI	GAGGAG	3 cut(s)	21, 128, 358
BseXI	GCAGC	2 cut(s)	497, 503
BseYI	CCCAGC	1 cut(s)	481
Bsh1236I	CGCG	3 cut(s)	178, 353, 502
BshFI	GGCC	3 cut(s)	164, 211, 305
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	245, 322
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	301, 487
BsmAI	GTCTC	2 cut(s)	24, 541
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	164, 211, 305
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	49, 224
BspACI	CCGC	4 cut(s)	208, 351, 373, 488
BspANI	GGCC	3 cut(s)	164, 211, 305
BspCNI	CTCAG	2 cut(s)	121, 545
BspFNI	CGCG	3 cut(s)	178, 353, 502
BspLI	GGNNCC	2 cut(s)	242, 393
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	1 cut(s)	323
BspT104I	TTCGAA	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	450
BssECI	CCNNGG	1 cut(s)	212
BssHII	GCGCGC	1 cut(s)	500
BssMI	GATC	2 cut(s)	49, 224
BssT1I	CCWWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	262, 601
Bst6I	CTCTTC	2 cut(s)	32, 323
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	445, 502
BstDEI	CTNAG	2 cut(s)	129, 532
BstF5I	GGATG	1 cut(s)	527
BstFNI	CGCG	3 cut(s)	178, 353, 502
BstHHI	GCGC	2 cut(s)	502, 504
BstKTI	GATC	2 cut(s)	52, 227
BstMAI	GTCTC	2 cut(s)	24, 541
BstMBI	GATC	2 cut(s)	49, 224
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 497
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	2 cut(s)	152, 600
BstUI	CGCG	3 cut(s)	178, 353, 502
BstV1I	GCAGC	2 cut(s)	497, 503
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	3 cut(s)	164, 211, 305
BtsCI	GGATG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	286, 597
Cac8I	GCNNGC	2 cut(s)	445, 502
CfoI	GCGC	2 cut(s)	502, 504
Cfr13I	GGNCC	3 cut(s)	162, 303, 348
Csp6I	GTAC	1 cut(s)	11
CviJI	RGCY	6 cut(s)	164, 211, 241, 285, 305, 447
CviKI_1	RGCY	6 cut(s)	164, 211, 241, 285, 305, 447
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	129, 532
DpnI	GATC	2 cut(s)	51, 226
DpnII	GATC	2 cut(s)	49, 224
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	32, 323
EarI	CTCTTC	2 cut(s)	32, 323
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaiI	YATR	2 cut(s)	60, 184
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	430
Fnu4HI	GCNGC	4 cut(s)	209, 486, 489, 492
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	4 cut(s)	209, 486, 489, 492
GlaI	GCGC	2 cut(s)	501, 503
GluI	GCNGC	4 cut(s)	209, 486, 489, 492
GsaI	CCCAGC	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	164, 211, 305
HapII	CCGG	2 cut(s)	245, 322
HhaI	GCGC	2 cut(s)	502, 504
Hin6I	GCGC	2 cut(s)	500, 502
HinP1I	GCGC	2 cut(s)	500, 502
HinfI	GANTC	4 cut(s)	265, 517, 549, 561
HpaII	CCGG	2 cut(s)	245, 322
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	2 cut(s)	229, 546
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	2 cut(s)	115, 328
HpyCH4III	ACNGT	2 cut(s)	262, 601
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 497
HpyF3I	CTNAG	2 cut(s)	129, 532
HpySE526I	ACGT	1 cut(s)	276
HspAI	GCGC	2 cut(s)	500, 502
Kzo9I	GATC	2 cut(s)	49, 224
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	140, 258, 308, 335, 344, 495
Lsp1109I	GCAGC	2 cut(s)	497, 503
LweI	GCATC	1 cut(s)	303
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	262, 593
MalI	GATC	2 cut(s)	51, 226
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	2 cut(s)	49, 224
MboII	GAAGA	5 cut(s)	49, 91, 130, 179, 310
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	3 cut(s)	192, 386, 460
MlyI	GAGTC	3 cut(s)	259, 543, 570
MnlI	CCTC	6 cut(s)	90, 106, 190, 336, 339, 541
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	245, 322
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	3 cut(s)	178, 353, 502
MwoI	GCNNNNNNNGC	2 cut(s)	491, 497
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	49, 224
NlaIV	GGNNCC	2 cut(s)	242, 393
NmuCI	GTSAC	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	69
PauI	GCGCGC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	4 cut(s)	210, 487, 490, 493
PleI	GAGTC	3 cut(s)	259, 543, 569
PpsI	GAGTC	3 cut(s)	259, 543, 569
PspFI	CCCAGC	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	242, 393
PspPI	GGNCC	3 cut(s)	162, 303, 348
PsuI	RGATCY	1 cut(s)	224
PteI	GCGCGC	1 cut(s)	500
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	4 cut(s)	209, 486, 489, 492
Sau3AI	GATC	2 cut(s)	49, 224
Sau96I	GGNCC	3 cut(s)	162, 303, 348
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	3 cut(s)	259, 543, 570
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	7 cut(s)	126, 153, 159, 279, 297, 403, 449
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	2 cut(s)	152, 600
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	348
Sse9I	AATT	3 cut(s)	192, 386, 460
SsiI	CCGC	4 cut(s)	208, 351, 373, 488
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	262, 601
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	5 cut(s)	52, 69, 287, 341, 470
TaqII	GACCGA	2 cut(s)	18, 157
TasI	AATT	3 cut(s)	192, 386, 460
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	2 cut(s)	211, 491
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	286, 604
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	485, 491
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	439
TspGWI	ACGGA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	286, 604
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	1 cut(s)	460
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.