Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020696.1

Orthogroup ID

OG0011695

Physical Location & Seq

Genomic Coordinates Forward (+)

3194 .. 6559

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020696.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

atgtcgagcataacagcttgcgttcggttcaggcctttgagctccggagagagaagagatcacggcgattcggatgagaaggaagaagaatttacgtttagctttgataaggtgttctacgaaaactcggagcaagctcaggtctacgaatttctagctctgccgattgtgaaagatgctgttgatgctatcaacggcacgatcatcacttatggacaggtaacttttcctccttacggtggtggcttgtttgcgtgtctgtgtgttaagttcctgtccggtcatgccttaattatcttgtcgattctaatttgcaactttgttcaaactaatgacagactggagctgggaagacgtatagggcctagcataatggtatgcgatgagcaaaagagaggattagttccgagaatagttgatggactgtttgattgcattaagtcttctgaaggaacagtgaagtactcaatcaaattgtcaatggtggagatctacatggaaaaagtaagggacctctttgatttgtccaaagacaacatacagatcaaggagagtaaagctcagggcattgtgttaaatggagtgacagagagtgggatagctaacaggactgttggagagacccagatgaacatgtccagcagcagaagtcattgtatttacctattcacagttcagcaagaattaaaaaaagataacaggttgaaaactggcaaattgattcttgttgacttggctggttctgagaaagcagagaaaactggagccgagggaaaagttcttgaagaagccaagaccatcaacaaatccctctcagcccttggaaatgtgataaatgctctcacatgtggttcaccaggcaaagcataccatatcccatatcgtgattccaaactcactcggcttttacaagatgcactgggaggaaactcccgtactgcattgttgtgctgctgctcaccaagcccttcaaatgcatcggagagtctgtccactcttcgctttggaatgagatttgatgttgaagatgtggtgttacttgaggagttgttcagattgagtggaattctctatgatcctggttcacctgaagatttggattcagcatttgaggatgtcacttcacagacaattatccaattgcagcacatggtggaagagcttgtatcaactgtagaggagctcaagaacgagaatatgactctgaaggacagactggcagctggtgaaagatccgatacacaacgcaaagaagctggaggccatatttcatgccttctgcatagagtttcgggcactctcggttcctttctaccctggttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008104 GO:0008150 GO:0008574 GO:0009553 GO:0009555 GO:0009561 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0030705 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046907 GO:0046983 GO:0048229 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051276 GO:0051321 GO:0051641 GO:0051649 GO:0061458 GO:0061982 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Kinesin

Protein Analysis

441

Amino Acids

48.7

Weight (kDa)

5.33

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63480 AT3G63480
fragaria_vesca	FvH4_6g05340 FvH4_6g05340
malus_domestica	MD12G1223800.v1.1
prunus_persica	Prupe.6G330200_v2.0.a1 Prupe.6G330200_v2.0.a1
pyrus_communis	pycom12g20920
rosa_chinensis	RchiOBHm_Chr3g0454101
rosa_laevigata	RLG00000025483
rosa_multiflora	Rmu_sc0020696.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430890
rosa_rugosa	Rorug02G0653000 Rorug02G0653100
rosa_samantha	Rh3AG055900 Rh3BG057300 Rh3CG056600 Rh3DG057900
rosa_wichuraiana	Rw3G004290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AccIII	TCCGGA	1 cut(s)	44
AclWI	GGATC	2 cut(s)	1070, 1227
AcsI	RAATTY	3 cut(s)	89, 149, 1065
AcuI	CTGAAG	3 cut(s)	468, 1110, 1226
AdeI	CACNNNGTG	1 cut(s)	1153
AfaI	GTAC	2 cut(s)	464, 937
AfiI	CCNNNNNNNGG	2 cut(s)	236, 239
AflIII	ACRYGT	2 cut(s)	633, 845
AgsI	TTSAA	5 cut(s)	326, 706, 785, 972, 1025
AjnI	CCWGG	3 cut(s)	856, 1078, 1316
Alw21I	GWGCWC	2 cut(s)	44, 1185
Alw26I	GTCTC	1 cut(s)	614
AlwI	GGATC	2 cut(s)	1070, 1227
Aor13HI	TCCGGA	1 cut(s)	44
AoxI	GGCC	3 cut(s)	32, 362, 1261
ApeKI	GCWGC	5 cut(s)	642, 951, 954, 1144, 1220
ApoI	RAATTY	3 cut(s)	89, 149, 1065
AspS9I	GGNCC	2 cut(s)	362, 511
AsuHPI	GGTGA	4 cut(s)	846, 951, 1077, 1238
AvaII	GGWCC	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	1298
BanII	GRGCYC	2 cut(s)	44, 1185
BbsI	GAAGAC	2 cut(s)	358, 435
Bbv12I	GWGCWC	2 cut(s)	44, 1185
BbvI	GCAGC	5 cut(s)	654, 938, 941, 1156, 1232
BccI	CCATC	2 cut(s)	413, 806
BceAI	ACGGC	2 cut(s)	79, 211
BciT130I	CCWGG	3 cut(s)	858, 1080, 1318
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	2 cut(s)	155, 366
BfmI	CTRYAG	1 cut(s)	1173
BglII	AGATCT	1 cut(s)	489
BisI	GCNGC	5 cut(s)	643, 952, 955, 1145, 1221
BlsI	GCNGC	5 cut(s)	644, 953, 956, 1146, 1222
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	858, 1080, 1318
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	2 cut(s)	362, 511
BmiI	GGNNCC	3 cut(s)	512, 766, 1306
BmrFI	CCNGG	3 cut(s)	858, 1080, 1318
BmrI	ACTGGG	1 cut(s)	929
BmsI	GCATC	4 cut(s)	166, 175, 904, 986
BmuI	ACTGGG	1 cut(s)	929
BpiI	GAAGAC	2 cut(s)	358, 435
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	3 cut(s)	362, 783, 1278
Bpu10I	CCTNAGC	2 cut(s)	138, 561
BpuEI	CTTGAG	2 cut(s)	1061, 1169
BsaI	GGTCTC	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	768, 820, 1316
BsaWI	WCCGGW	2 cut(s)	44, 278
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 974, 1004
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 239
Bse1I	ACTGG	5 cut(s)	345, 715, 766, 924, 1221
BseAI	TCCGGA	1 cut(s)	44
BseBI	CCWGG	3 cut(s)	858, 1080, 1318
BseDI	CCNNGG	3 cut(s)	768, 820, 1316
BseGI	GGATG	2 cut(s)	79, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	236, 239
BseMII	CTCAG	4 cut(s)	152, 575, 735, 828
BseNI	ACTGG	5 cut(s)	345, 715, 766, 924, 1221
BseRI	GAGGAG	2 cut(s)	1058, 1193
BseSI	GKGCMC	1 cut(s)	1298
BseXI	GCAGC	5 cut(s)	654, 938, 941, 1156, 1232
BseYI	CCCAGC	1 cut(s)	346
BshFI	GGCC	3 cut(s)	34, 364, 1263
BsiHKAI	GWGCWC	2 cut(s)	44, 1185
BsiSI	CCGG	2 cut(s)	45, 279
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	236, 239
BsmAI	GTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	3 cut(s)	34, 364, 1263
Bso31I	GGTCTC	1 cut(s)	614
Bsp1286I	GDGCHC	3 cut(s)	44, 1185, 1298
Bsp13I	TCCGGA	1 cut(s)	44
Bsp143I	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
BspANI	GGCC	3 cut(s)	34, 364, 1263
BspCNI	CTCAG	4 cut(s)	151, 574, 736, 827
BspEI	TCCGGA	1 cut(s)	44
BspLI	GGNNCC	3 cut(s)	512, 766, 1306
BspPI	GGATC	2 cut(s)	1070, 1227
BspQI	GCTCTTC	1 cut(s)	1152
BspTNI	GGTCTC	1 cut(s)	614
BsrI	ACTGG	5 cut(s)	345, 715, 766, 924, 1221
BssECI	CCNNGG	3 cut(s)	768, 820, 1316
BssMI	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
BssT1I	CCWWGG	1 cut(s)	820
Bst2UI	CCWGG	3 cut(s)	858, 1080, 1318
Bst4CI	ACNGT	6 cut(s)	239, 426, 457, 613, 673, 1174
Bst6I	CTCTTC	3 cut(s)	49, 1002, 1152
BstC8I	GCNNGC	2 cut(s)	19, 135
BstDEI	CTNAG	4 cut(s)	138, 561, 744, 814
BstF5I	GGATG	2 cut(s)	79, 1120
BstKTI	GATC	6 cut(s)	61, 204, 492, 546, 1078, 1235
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 963
BstNI	CCWGG	3 cut(s)	858, 1080, 1318
BstNSI	RCATGY	2 cut(s)	637, 849
BstSCI	CCNGG	3 cut(s)	856, 1078, 1316
BstSFI	CTRYAG	1 cut(s)	1173
BstSLI	GKGCMC	1 cut(s)	1298
BstV1I	GCAGC	5 cut(s)	654, 938, 941, 1156, 1232
BstV2I	GAAGAC	2 cut(s)	358, 435
BstX2I	RGATCY	2 cut(s)	489, 1232
BstYI	RGATCY	2 cut(s)	489, 1232
BsuRI	GGCC	3 cut(s)	34, 364, 1263
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	79, 1120
BtsIMutI	CAGTG	2 cut(s)	462, 917
Cac8I	GCNNGC	2 cut(s)	19, 135
Cfr13I	GGNCC	2 cut(s)	362, 511
Csp6I	GTAC	2 cut(s)	463, 936
CviAII	CATG	6 cut(s)	284, 496, 634, 846, 1150, 1272
CviQI	GTAC	2 cut(s)	463, 936
DdeI	CTNAG	4 cut(s)	138, 561, 744, 814
DpnI	GATC	6 cut(s)	60, 203, 491, 545, 1077, 1234
DpnII	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
DraIII	CACNNNGTG	1 cut(s)	1153
Eam1104I	CTCTTC	3 cut(s)	49, 1002, 1152
EarI	CTCTTC	3 cut(s)	49, 1002, 1152
Ecl136II	GAGCTC	2 cut(s)	42, 1183
Eco130I	CCWWGG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	2 cut(s)	44, 1185
Eco31I	GGTCTC	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	2 cut(s)	42, 1183
Eco57I	CTGAAG	3 cut(s)	468, 1110, 1226
EcoICRI	GAGCTC	2 cut(s)	42, 1183
EcoO109I	RGGNCCY	2 cut(s)	362, 511
EcoRI	GAATTC	1 cut(s)	1065
EcoRII	CCWGG	3 cut(s)	856, 1078, 1316
EcoT14I	CCWWGG	1 cut(s)	820
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	2 cut(s)	44, 1185
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	6 cut(s)	287, 499, 637, 849, 1153, 1275
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	6 cut(s)	283, 495, 633, 845, 1149, 1271
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	643, 952, 955, 1145, 1221
FokI	GGATG	2 cut(s)	86, 1127
FriOI	GRGCYC	2 cut(s)	44, 1185
Fsp4HI	GCNGC	5 cut(s)	643, 952, 955, 1145, 1221
FspBI	CTAG	2 cut(s)	155, 366
GluI	GCNGC	5 cut(s)	643, 952, 955, 1145, 1221
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	3 cut(s)	362, 783, 1278
HaeIII	GGCC	3 cut(s)	34, 364, 1263
HapII	CCGG	2 cut(s)	45, 279
Hin1II	CATG	6 cut(s)	287, 499, 637, 849, 1153, 1275
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HinfI	GANTC	7 cut(s)	68, 304, 721, 887, 985, 1100, 1201
HpaII	CCGG	2 cut(s)	45, 279
HphI	GGTGA	4 cut(s)	846, 951, 1077, 1238
Hpy166II	GTNNAC	5 cut(s)	145, 730, 854, 993, 1085
Hpy188III	TCNNGA	4 cut(s)	45, 782, 884, 1186
Hpy8I	GTNNAC	5 cut(s)	145, 730, 854, 993, 1085
HpyAV	CCTTC	5 cut(s)	73, 443, 978, 1201, 1286
HpyCH4III	ACNGT	6 cut(s)	239, 426, 457, 613, 673, 1174
HpyCH4IV	ACGT	2 cut(s)	95, 355
HpyCH4V	TGCA	7 cut(s)	315, 435, 917, 941, 977, 1144, 1282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 963
HpyF3I	CTNAG	4 cut(s)	138, 561, 744, 814
HpySE526I	ACGT	2 cut(s)	95, 355
Hsp92II	CATG	6 cut(s)	287, 499, 637, 849, 1153, 1275
Kpn2I	TCCGGA	1 cut(s)	44
Kzo9I	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
LguI	GCTCTTC	1 cut(s)	1152
LmnI	GCTCC	5 cut(s)	47, 130, 343, 764, 1180
Lsp1109I	GCAGC	5 cut(s)	654, 938, 941, 1156, 1232
LweI	GCATC	4 cut(s)	166, 175, 904, 986
MaeI	CTAG	2 cut(s)	155, 366
MaeII	ACGT	2 cut(s)	95, 355
MaeIII	GTNAC	4 cut(s)	220, 583, 1035, 1117
MalI	GATC	6 cut(s)	60, 203, 491, 545, 1077, 1234
MboI	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
MfeI	CAATTG	1 cut(s)	1139
MflI	RGATCY	2 cut(s)	489, 1232
MhlI	GDGCHC	3 cut(s)	44, 1185, 1298
MlyI	GAGTC	2 cut(s)	994, 1195
MmeI	TCCRAC	1 cut(s)	595
Mph1103I	ATGCAT	1 cut(s)	979
MroI	TCCGGA	1 cut(s)	44
MseI	TTAA	5 cut(s)	267, 290, 438, 575, 686
MslI	CAYNNNNRTG	1 cut(s)	946
MspA1I	CMGCKG	1 cut(s)	1223
MspI	CCGG	2 cut(s)	45, 279
MspR9I	CCNGG	3 cut(s)	858, 1080, 1318
MunI	CAATTG	1 cut(s)	1139
MvaI	CCWGG	3 cut(s)	858, 1080, 1318
MwoI	GCNNNNNNNGC	2 cut(s)	185, 963
NdeII	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
NlaIII	CATG	6 cut(s)	287, 499, 637, 849, 1153, 1275
NlaIV	GGNNCC	3 cut(s)	512, 766, 1306
NmeAIII	GCCGAG	2 cut(s)	793, 880
NmuCI	GTSAC	2 cut(s)	583, 1117
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	2 cut(s)	637, 849
PceI	AGGCCT	1 cut(s)	34
PciI	ACATGT	2 cut(s)	633, 845
PciSI	GCTCTTC	1 cut(s)	1152
PfeI	GAWTC	5 cut(s)	68, 304, 721, 887, 1100
PkrI	GCNGC	5 cut(s)	644, 953, 956, 1146, 1222
PleI	GAGTC	2 cut(s)	993, 1195
PpsI	GAGTC	2 cut(s)	993, 1195
PpuMI	RGGWCCY	1 cut(s)	511
PscI	ACATGT	2 cut(s)	633, 845
Psp124BI	GAGCTC	2 cut(s)	44, 1185
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	3 cut(s)	856, 1078, 1316
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	3 cut(s)	856, 1078, 1316
PspN4I	GGNNCC	3 cut(s)	512, 766, 1306
PspPI	GGNCC	2 cut(s)	362, 511
PspPPI	RGGWCCY	1 cut(s)	511
PsuI	RGATCY	2 cut(s)	489, 1232
PvuII	CAGCTG	1 cut(s)	1223
RsaI	GTAC	2 cut(s)	464, 937
RsaNI	GTAC	2 cut(s)	463, 936
RseI	CAYNNNNRTG	1 cut(s)	946
SacI	GAGCTC	2 cut(s)	44, 1185
SapI	GCTCTTC	1 cut(s)	1152
SaqAI	TTAA	5 cut(s)	267, 290, 438, 575, 686
SatI	GCNGC	5 cut(s)	643, 952, 955, 1145, 1221
Sau3AI	GATC	6 cut(s)	58, 201, 489, 543, 1075, 1232
Sau96I	GGNCC	2 cut(s)	362, 511
ScaI	AGTACT	1 cut(s)	464
SchI	GAGTC	2 cut(s)	994, 1195
ScrFI	CCNGG	3 cut(s)	858, 1080, 1318
SduI	GDGCHC	3 cut(s)	44, 1185, 1298
SfaNI	GCATC	4 cut(s)	166, 175, 904, 986
SfcI	CTRYAG	1 cut(s)	1173
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	946
SmlI	CTYRAG	2 cut(s)	1040, 1184
SmoI	CTYRAG	2 cut(s)	1040, 1184
SseBI	AGGCCT	1 cut(s)	34
SspMI	CTAG	2 cut(s)	155, 366
SstI	GAGCTC	2 cut(s)	44, 1185
StuI	AGGCCT	1 cut(s)	34
StyD4I	CCNGG	3 cut(s)	856, 1078, 1316
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	6 cut(s)	239, 426, 457, 613, 673, 1174
TaiI	ACGT	2 cut(s)	98, 358
TaqI	TCGA	2 cut(s)	5, 302
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	5 cut(s)	68, 304, 721, 887, 1100
Tru1I	TTAA	5 cut(s)	267, 290, 438, 575, 686
Tru9I	TTAA	5 cut(s)	267, 290, 438, 575, 686
TscAI	CASTG	2 cut(s)	462, 924
TseFI	GTSAC	2 cut(s)	583, 1117
TseI	GCWGC	5 cut(s)	642, 951, 954, 1144, 1220
Tsp45I	GTSAC	2 cut(s)	583, 1117
TspDTI	ATGAA	2 cut(s)	644, 1260
TspRI	CASTG	2 cut(s)	462, 924
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	3 cut(s)	89, 149, 1065
XceI	RCATGY	2 cut(s)	637, 849
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	155, 366
ZrmI	AGTACT	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.