Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011695

Physical Location & Seq

Genomic Coordinates Reverse (-)

3915423 .. 3916641

Gene Structure 1219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG055900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAACATGTCCAGCAGCAGAAGTCATTGTATTTACCTATTCACAGTTCAGCAAGAATTAAAGAAAGATAACAGGTTGAAAACTGGCAAATTGATTCTTGTTGACTTGGCTGGTTCTGAGAAAGCAGAGAAAACTGGAGCCGAGGGAAAAGTTCTTGAAGAAGCCAAGACCATCAACAAATCCCTCTCAGCCCTTGGAAATGTGATAAATGCTCTCACATGTGGTTCACCAGGCAAAGCATACCATATCCCATATCGTGATTCCAAACTCACTCGGCTTTTACAAGATGCACTGGGAGGAAACTCCCGTACTGCATTGTTGTGCTGCTGCTCACCAAGCCCTTCAAATGCATCAGAGAGTCTGTCCACTCTTCGCTTTGGAATGAGGGCAAAGCATATAAAGATGTCACTGCATGCCAAGTCCAGTGAAGATAAGTATGCTAAAAAGGATGGATCCCCCTCTTCAAGTAAAAACCAGGCCTGTGAGAGAATTTTGGACCAGTTGAGGGACAGATTTGATGTTGAAGATGTGGTGTTACTTGAGGAGTTGTTCAGATTGAGTGGAATTCTCTATGATCCTGGTTCACCTGAAGATTTGGATTCGGCATTTGAGGATGTCACTTCACAGACAATTATCCAATTGCAGCACATGGTGGAAGAGCTTGTATCAACTGTAGAGGAGGTATGTATGAGCTGGAGTTTACTGATACATATTGTTCTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0003006 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008104 GO:0008150 GO:0008574 GO:0009553 GO:0009555 GO:0009561 GO:0009791 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0030705 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0042623 GO:0042802 GO:0042803 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045132 GO:0045143 GO:0046907 GO:0046983 GO:0048229 GO:0048285 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051276 GO:0051321 GO:0051641 GO:0051649 GO:0061458 GO:0061982 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Kinesin

Protein Analysis

241

Amino Acids

26.54

Weight (kDa)

6.1

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	1 - 133	8.4e-51	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63480 AT3G63480
fragaria_vesca	FvH4_6g05340 FvH4_6g05340
malus_domestica	MD12G1223800.v1.1
prunus_persica	Prupe.6G330200_v2.0.a1 Prupe.6G330200_v2.0.a1
pyrus_communis	pycom12g20920
rosa_chinensis	RchiOBHm_Chr3g0454101
rosa_laevigata	RLG00000025483
rosa_multiflora	Rmu_sc0020696.1_g000002
rosa_roxburghii	Rroxscaffold_6G00430890
rosa_rugosa	Rorug02G0653000 Rorug02G0653100
rosa_samantha	Rh3AG055900 Rh3BG057300 Rh3CG056600 Rh3DG057900
rosa_wichuraiana	Rw3G004290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	447, 460, 569
AcsI	RAATTY	2 cut(s)	489, 564
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	505
AflIII	ACRYGT	2 cut(s)	6, 218
AgsI	TTSAA	5 cut(s)	79, 158, 345, 465, 524
AjnI	CCWGG	3 cut(s)	229, 474, 577
AluBI	AGCT	3 cut(s)	661, 693, 722
AluI	AGCT	3 cut(s)	661, 693, 722
AlwI	GGATC	3 cut(s)	447, 460, 569
AoxI	GGCC	1 cut(s)	477
ApeKI	GCWGC	4 cut(s)	15, 324, 327, 643
ApoI	RAATTY	2 cut(s)	489, 564
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	3 cut(s)	219, 324, 576
AvaII	GGWCC	1 cut(s)	496
BamHI	GGATCC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	27, 311, 314, 655
BccI	CCATC	2 cut(s)	179, 443
BciT130I	CCWGG	3 cut(s)	231, 476, 579
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	672
BisI	GCNGC	4 cut(s)	16, 325, 328, 644
BlsI	GCNGC	4 cut(s)	17, 326, 329, 645
Bme1390I	CCNGG	3 cut(s)	231, 476, 579
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	2 cut(s)	139, 454
BmrFI	CCNGG	3 cut(s)	231, 476, 579
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	2 cut(s)	277, 359
BmuI	ACTGGG	1 cut(s)	302
BpmI	CTGGAG	2 cut(s)	156, 715
BpuEI	CTTGAG	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	141, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	5 cut(s)	88, 139, 297, 423, 499
BseBI	CCWGG	3 cut(s)	231, 476, 579
BseDI	CCNNGG	2 cut(s)	141, 193
BseGI	GGATG	2 cut(s)	454, 619
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	2 cut(s)	108, 201
BseNI	ACTGG	5 cut(s)	88, 139, 297, 423, 499
BseRI	GAGGAG	2 cut(s)	557, 692
BseXI	GCAGC	4 cut(s)	27, 311, 314, 655
BshFI	GGCC	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmFI	GGGAC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	479
Bsp143I	GATC	2 cut(s)	452, 574
BspANI	GGCC	1 cut(s)	479
BspCNI	CTCAG	2 cut(s)	109, 200
BspLI	GGNNCC	2 cut(s)	139, 454
BspPI	GGATC	3 cut(s)	447, 460, 569
BspQI	GCTCTTC	1 cut(s)	651
BsrI	ACTGG	5 cut(s)	88, 139, 297, 423, 499
BssECI	CCNNGG	2 cut(s)	141, 193
BssMI	GATC	2 cut(s)	452, 574
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	3 cut(s)	231, 476, 579
Bst4CI	ACNGT	2 cut(s)	46, 673
Bst6I	CTCTTC	3 cut(s)	375, 466, 651
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	117, 187
BstF5I	GGATG	2 cut(s)	454, 619
BstKTI	GATC	2 cut(s)	455, 577
BstMBI	GATC	2 cut(s)	452, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	3 cut(s)	231, 476, 579
BstNSI	RCATGY	3 cut(s)	10, 222, 416
BstSCI	CCNGG	3 cut(s)	229, 474, 577
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	4 cut(s)	27, 311, 314, 655
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	454, 619
BtsI	GCAGTG	1 cut(s)	407
BtsIMutI	CAGTG	3 cut(s)	290, 407, 430
Cac8I	GCNNGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	4 cut(s)	7, 219, 413, 649
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	117, 187
DpnI	GATC	2 cut(s)	454, 576
DpnII	GATC	2 cut(s)	452, 574
DraIII	CACNNNGTG	1 cut(s)	652
Eam1104I	CTCTTC	3 cut(s)	375, 466, 651
EarI	CTCTTC	3 cut(s)	375, 466, 651
Eco130I	CCWWGG	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	564
EcoRII	CCWGG	3 cut(s)	229, 474, 577
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	4 cut(s)	10, 222, 416, 652
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	4 cut(s)	6, 218, 412, 648
Fnu4HI	GCNGC	4 cut(s)	16, 325, 328, 644
FokI	GGATG	2 cut(s)	461, 626
Fsp4HI	GCNGC	4 cut(s)	16, 325, 328, 644
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	4 cut(s)	16, 325, 328, 644
GsuI	CTGGAG	2 cut(s)	156, 715
HaeIII	GGCC	1 cut(s)	479
Hin1II	CATG	4 cut(s)	10, 222, 416, 652
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	4 cut(s)	94, 260, 358, 599
HphI	GGTGA	3 cut(s)	219, 324, 576
Hpy166II	GTNNAC	5 cut(s)	103, 227, 366, 584, 701
Hpy188I	TCNGA	3 cut(s)	118, 355, 554
Hpy188III	TCNNGA	2 cut(s)	155, 257
Hpy8I	GTNNAC	5 cut(s)	103, 227, 366, 584, 701
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	2 cut(s)	46, 673
HpyCH4V	TGCA	5 cut(s)	290, 314, 350, 412, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpyF3I	CTNAG	2 cut(s)	117, 187
Hsp92II	CATG	4 cut(s)	10, 222, 416, 652
Kzo9I	GATC	2 cut(s)	452, 574
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	4 cut(s)	27, 311, 314, 655
LweI	GCATC	2 cut(s)	277, 359
MaeI	CTAG	1 cut(s)	719
MaeIII	GTNAC	3 cut(s)	405, 534, 616
MalI	GATC	2 cut(s)	454, 576
MboI	GATC	2 cut(s)	452, 574
MboII	GAAGA	7 cut(s)	170, 362, 440, 453, 536, 602, 668
MfeI	CAATTG	1 cut(s)	638
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	6 cut(s)	56, 89, 489, 564, 630, 638
MlyI	GAGTC	1 cut(s)	367
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	2 cut(s)	59, 724
MslI	CAYNNNNRTG	1 cut(s)	319
MspR9I	CCNGG	3 cut(s)	231, 476, 579
MunI	CAATTG	1 cut(s)	638
MvaI	CCWGG	3 cut(s)	231, 476, 579
MwoI	GCNNNNNNNGC	1 cut(s)	336
NdeII	GATC	2 cut(s)	452, 574
NlaIII	CATG	4 cut(s)	10, 222, 416, 652
NlaIV	GGNNCC	2 cut(s)	139, 454
NmeAIII	GCCGAG	2 cut(s)	166, 253
NmuCI	GTSAC	2 cut(s)	405, 616
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	3 cut(s)	10, 222, 416
PaeI	GCATGC	1 cut(s)	416
PceI	AGGCCT	1 cut(s)	479
PciI	ACATGT	2 cut(s)	6, 218
PciSI	GCTCTTC	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	94, 260, 599
PkrI	GCNGC	4 cut(s)	17, 326, 329, 645
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PscI	ACATGT	2 cut(s)	6, 218
Psp6I	CCWGG	3 cut(s)	229, 474, 577
PspGI	CCWGG	3 cut(s)	229, 474, 577
PspN4I	GGNNCC	2 cut(s)	139, 454
PspPI	GGNCC	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	59, 724
SatI	GCNGC	4 cut(s)	16, 325, 328, 644
Sau3AI	GATC	2 cut(s)	452, 574
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	3 cut(s)	231, 476, 579
SetI	ASST	7 cut(s)	39, 77, 589, 663, 684, 695, 724
SfaNI	GCATC	2 cut(s)	277, 359
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	1 cut(s)	496
SmiMI	CAYNNNNRTG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	6 cut(s)	56, 89, 489, 564, 630, 638
SseBI	AGGCCT	1 cut(s)	479
SspMI	CTAG	1 cut(s)	719
StuI	AGGCCT	1 cut(s)	479
StyD4I	CCNGG	3 cut(s)	229, 474, 577
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	46, 673
TasI	AATT	6 cut(s)	56, 89, 489, 564, 630, 638
TfiI	GAWTC	3 cut(s)	94, 260, 599
Tru1I	TTAA	2 cut(s)	59, 724
Tru9I	TTAA	2 cut(s)	59, 724
TscAI	CASTG	3 cut(s)	297, 414, 430
TseFI	GTSAC	2 cut(s)	405, 616
TseI	GCWGC	4 cut(s)	15, 324, 327, 643
Tsp45I	GTSAC	2 cut(s)	405, 616
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	297, 414, 430
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	489, 564
XceI	RCATGY	3 cut(s)	10, 222, 416
XspI	CTAG	1 cut(s)	719
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.