Rh3BG057300
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011695
Physical Location & Seq
Reverse (-)
3914930 .. 3918877
3948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG057300.1

Sequence Viewer

Length: 825 bp
ATGAACATGTCCAGCAGCAGAAGTCATTGTATTTACCTATTCACAGTTCAGCAAGAATTAAAGAAAGATAACAGGTTGAAAACTGGCAAATTGATTCTTGTTGACTTGGCTGGTTCTGAGAAAGCAGAGAAAACTGGAGCCGAGGGAAAAGTTCTTGAAGAAGCCAAGACCATCAACAAATCCCTCTCAGCCCTTGGAAATGTGATAAATGCTCTCACATGTGGTTCACCAGGCAAAGCATACCATATCCCATATCGTGATTCCAAACTCACTCGGCTTTTACAAGATGCACTGGGAGGAAACTCCCGTACTGCATTGTTGTGCTGCTGCTCACCAAGCCCTTCAAATGCATCAGAGAGTCTGTCCACTCTTCGCTTTGGAATGAGGGCAAAGCATATAAAGATGTCACTGCATGCCAAGTCCAGTGAAGATAAGTATGCTAAAAAGGATGGATCCCCCTCTTCAAGTAAAAACCAGGCCTGTGAGAGAATTTTGGACCAGTTGAGGGACAGATTTGATGTTGAAGATGTGGTGTTACTTGAGGAGTTGTTCAGATTGAGTGGAATTCTCTATGATCCTGGTTCACCTGAAGATTTGGATTCGGCATTTGAGGATGTCACTTCACAGACAATTATCCAATTGCAGCACATGGTGGAAGAGCTTGTATCAACTGTAGAGGAGCTCAAGAACGAGAATATGACTCTGAAGGACAGACTGGCAGCTGGTGAAGGATCCGATACACAACGCAAAGAAGCTGGAGGCCATATTTCAAGCCTTCTGCATAGAGTTTCAGGCACTCTCGGTTCCTTTCTACCCTGGTTCTGA

Protein Analysis

274

Amino Acids

30.08

Weight (kDa)

6.4

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 1 - 133 1.2e-50 Kinesin motor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011695)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63480 AT3G63480
fragaria_vesca FvH4_6g05340 FvH4_6g05340
malus_domestica MD12G1223800.v1.1
prunus_persica Prupe.6G330200_v2.0.a1 Prupe.6G330200_v2.0.a1
pyrus_communis pycom12g20920
rosa_chinensis RchiOBHm_Chr3g0454101
rosa_laevigata RLG00000025483
rosa_multiflora Rmu_sc0020696.1_g000002
rosa_roxburghii Rroxscaffold_6G00430890
rosa_rugosa Rorug02G0653000 Rorug02G0653100
rosa_samantha Rh3AG055900 Rh3BG057300 Rh3CG056600 Rh3DG057900
rosa_wichuraiana Rw3G004290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 447, 460, 569, 726, 739
AcsI RAATTY 2 cut(s) 489, 564
AcuI CTGAAG 2 cut(s) 609, 725
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 505
AflIII ACRYGT 2 cut(s) 6, 218
AgsI TTSAA 6 cut(s) 79, 158, 345, 465, 524, 771
AjnI CCWGG 4 cut(s) 229, 474, 577, 815
AluBI AGCT 4 cut(s) 661, 682, 722, 755
AluI AGCT 4 cut(s) 661, 682, 722, 755
Alw21I GWGCWC 1 cut(s) 684
AlwI GGATC 5 cut(s) 447, 460, 569, 726, 739
AoxI GGCC 2 cut(s) 477, 760
ApeKI GCWGC 5 cut(s) 15, 324, 327, 643, 719
ApoI RAATTY 2 cut(s) 489, 564
AspS9I GGNCC 1 cut(s) 496
AsuHPI GGTGA 4 cut(s) 219, 324, 576, 737
AvaII GGWCC 1 cut(s) 496
BamHI GGATCC 2 cut(s) 452, 731
BanII GRGCYC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 5 cut(s) 27, 311, 314, 655, 731
BccI CCATC 2 cut(s) 179, 443
BciT130I CCWGG 4 cut(s) 231, 476, 579, 817
BfmI CTRYAG 1 cut(s) 672
BisI GCNGC 5 cut(s) 16, 325, 328, 644, 720
BlsI GCNGC 5 cut(s) 17, 326, 329, 645, 721
Bme1390I CCNGG 4 cut(s) 231, 476, 579, 817
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 496
BmiI GGNNCC 4 cut(s) 139, 454, 733, 805
BmrFI CCNGG 4 cut(s) 231, 476, 579, 817
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 277, 359
BmuI ACTGGG 1 cut(s) 302
BpmI CTGGAG 2 cut(s) 156, 777
BpuEI CTTGAG 2 cut(s) 560, 668
BsaJI CCNNGG 3 cut(s) 141, 193, 815
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse1I ACTGG 6 cut(s) 88, 139, 297, 423, 499, 720
BseBI CCWGG 4 cut(s) 231, 476, 579, 817
BseDI CCNNGG 3 cut(s) 141, 193, 815
BseGI GGATG 2 cut(s) 454, 619
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 2 cut(s) 108, 201
BseNI ACTGG 6 cut(s) 88, 139, 297, 423, 499, 720
BseRI GAGGAG 2 cut(s) 557, 692
BseXI GCAGC 5 cut(s) 27, 311, 314, 655, 731
BshFI GGCC 2 cut(s) 479, 762
BsiHKAI GWGCWC 1 cut(s) 684
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 505
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 2 cut(s) 479, 762
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 3 cut(s) 452, 574, 731
BspANI GGCC 2 cut(s) 479, 762
BspCNI CTCAG 2 cut(s) 109, 200
BspLI GGNNCC 4 cut(s) 139, 454, 733, 805
BspPI GGATC 5 cut(s) 447, 460, 569, 726, 739
BspQI GCTCTTC 1 cut(s) 651
BsrI ACTGG 6 cut(s) 88, 139, 297, 423, 499, 720
BssECI CCNNGG 3 cut(s) 141, 193, 815
BssMI GATC 3 cut(s) 452, 574, 731
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 4 cut(s) 231, 476, 579, 817
Bst4CI ACNGT 2 cut(s) 46, 673
Bst6I CTCTTC 3 cut(s) 375, 466, 651
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 2 cut(s) 117, 187
BstF5I GGATG 2 cut(s) 454, 619
BstKTI GATC 3 cut(s) 455, 577, 734
BstMBI GATC 3 cut(s) 452, 574, 731
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 4 cut(s) 231, 476, 579, 817
BstNSI RCATGY 3 cut(s) 10, 222, 416
BstSCI CCNGG 4 cut(s) 229, 474, 577, 815
BstSFI CTRYAG 1 cut(s) 672
BstV1I GCAGC 5 cut(s) 27, 311, 314, 655, 731
BstX2I RGATCY 2 cut(s) 452, 731
BstYI RGATCY 2 cut(s) 452, 731
BsuRI GGCC 2 cut(s) 479, 762
BtsCI GGATG 2 cut(s) 454, 619
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 3 cut(s) 290, 407, 430
Cac8I GCNNGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 496
Csp6I GTAC 1 cut(s) 309
CviAII CATG 4 cut(s) 7, 219, 413, 649
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 2 cut(s) 117, 187
DpnI GATC 3 cut(s) 454, 576, 733
DpnII GATC 3 cut(s) 452, 574, 731
DraIII CACNNNGTG 1 cut(s) 652
Eam1104I CTCTTC 3 cut(s) 375, 466, 651
EarI CTCTTC 3 cut(s) 375, 466, 651
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 479
Eco24I GRGCYC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 609, 725
EcoICRI GAGCTC 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 564
EcoRII CCWGG 4 cut(s) 229, 474, 577, 815
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 684
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 4 cut(s) 10, 222, 416, 652
FaqI GGGAC 1 cut(s) 521
FatI CATG 4 cut(s) 6, 218, 412, 648
Fnu4HI GCNGC 5 cut(s) 16, 325, 328, 644, 720
FokI GGATG 2 cut(s) 461, 626
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 5 cut(s) 16, 325, 328, 644, 720
GluI GCNGC 5 cut(s) 16, 325, 328, 644, 720
GsuI CTGGAG 2 cut(s) 156, 777
HaeIII GGCC 2 cut(s) 479, 762
Hin1II CATG 4 cut(s) 10, 222, 416, 652
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 5 cut(s) 94, 260, 358, 599, 700
HphI GGTGA 4 cut(s) 219, 324, 576, 737
Hpy166II GTNNAC 4 cut(s) 103, 227, 366, 584
Hpy188I TCNGA 6 cut(s) 118, 355, 554, 705, 736, 824
Hpy188III TCNNGA 3 cut(s) 155, 257, 685
Hpy8I GTNNAC 4 cut(s) 103, 227, 366, 584
HpyAV CCTTC 4 cut(s) 351, 700, 722, 785
HpyCH4III ACNGT 2 cut(s) 46, 673
HpyCH4V TGCA 6 cut(s) 290, 314, 350, 412, 643, 781
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 2 cut(s) 117, 187
Hsp92II CATG 4 cut(s) 10, 222, 416, 652
Kzo9I GATC 3 cut(s) 452, 574, 731
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 2 cut(s) 137, 679
Lsp1109I GCAGC 5 cut(s) 27, 311, 314, 655, 731
LweI GCATC 2 cut(s) 277, 359
MaeIII GTNAC 3 cut(s) 405, 534, 616
MalI GATC 3 cut(s) 454, 576, 733
MboI GATC 3 cut(s) 452, 574, 731
MboII GAAGA 7 cut(s) 170, 362, 440, 453, 536, 602, 668
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 2 cut(s) 452, 731
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 6 cut(s) 56, 89, 489, 564, 630, 638
MlyI GAGTC 2 cut(s) 367, 694
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 722
MspR9I CCNGG 4 cut(s) 231, 476, 579, 817
MunI CAATTG 1 cut(s) 638
MvaI CCWGG 4 cut(s) 231, 476, 579, 817
MwoI GCNNNNNNNGC 1 cut(s) 336
NdeII GATC 3 cut(s) 452, 574, 731
NlaIII CATG 4 cut(s) 10, 222, 416, 652
NlaIV GGNNCC 4 cut(s) 139, 454, 733, 805
NmeAIII GCCGAG 2 cut(s) 166, 253
NmuCI GTSAC 2 cut(s) 405, 616
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 3 cut(s) 10, 222, 416
PaeI GCATGC 1 cut(s) 416
PceI AGGCCT 1 cut(s) 479
PciI ACATGT 2 cut(s) 6, 218
PciSI GCTCTTC 1 cut(s) 651
PfeI GAWTC 3 cut(s) 94, 260, 599
PkrI GCNGC 5 cut(s) 17, 326, 329, 645, 721
PleI GAGTC 2 cut(s) 366, 694
PpsI GAGTC 2 cut(s) 366, 694
PscI ACATGT 2 cut(s) 6, 218
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 4 cut(s) 229, 474, 577, 815
PspGI CCWGG 4 cut(s) 229, 474, 577, 815
PspN4I GGNNCC 4 cut(s) 139, 454, 733, 805
PspPI GGNCC 1 cut(s) 496
PsuI RGATCY 2 cut(s) 452, 731
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
RseI CAYNNNNRTG 1 cut(s) 319
SacI GAGCTC 1 cut(s) 684
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 5 cut(s) 16, 325, 328, 644, 720
Sau3AI GATC 3 cut(s) 452, 574, 731
Sau96I GGNCC 1 cut(s) 496
SchI GAGTC 2 cut(s) 367, 694
ScrFI CCNGG 4 cut(s) 231, 476, 579, 817
SduI GDGCHC 1 cut(s) 684
SetI ASST 7 cut(s) 39, 77, 589, 663, 684, 724, 757
SfaNI GCATC 2 cut(s) 277, 359
SfcI CTRYAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 319
SmlI CTYRAG 2 cut(s) 539, 683
SmoI CTYRAG 2 cut(s) 539, 683
SphI GCATGC 1 cut(s) 416
Sse9I AATT 6 cut(s) 56, 89, 489, 564, 630, 638
SseBI AGGCCT 1 cut(s) 479
SstI GAGCTC 1 cut(s) 684
StuI AGGCCT 1 cut(s) 479
StyD4I CCNGG 4 cut(s) 229, 474, 577, 815
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 46, 673
TasI AATT 6 cut(s) 56, 89, 489, 564, 630, 638
TfiI GAWTC 3 cut(s) 94, 260, 599
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 3 cut(s) 297, 414, 430
TseFI GTSAC 2 cut(s) 405, 616
TseI GCWGC 5 cut(s) 15, 324, 327, 643, 719
Tsp45I GTSAC 2 cut(s) 405, 616
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 297, 414, 430
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 2 cut(s) 489, 564
XceI RCATGY 3 cut(s) 10, 222, 416
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.