Rmu_sc0023719.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023719.1
OG0010877
Physical Location & Seq
Forward (+)
1 .. 808
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023719.1_g000001.1.cds

Sequence Viewer

Length: 808 bp
gctcaacctctcgttcaatcacttctccggccggattccgaaatcgctgggagacttaccggtgacggtgagcttcgatctccgcaacaataatttcagcggcgaaattccccaaacggggtcgttttctaaccagggcccgaccgcgtttctcaacaaccctctcttatgcgggtttccgctccagaaatcttgcaaagaccaggccccgagttccccgggtaacccgaattcctcgcccggatccgacaacaacccgaaaaaggggttgagtccgggtctgatcatcctcatctccgtagccgacgccgccgcagtcgcattcatcggtttggtcgtagtttacatttactggaaaaagaaggacaatgccaacggctgttcatgtaccggaaagacaaaattcggcgccaacaccgagaaaagccgactctgttgttcttgcatcaacggcgggttcgggaactcggactccgaactcgacccgcccgagagaggaagaggcgaaggagagcttgtggcaatcgataaggggttcacatttgaactcgacgagctgctgagagcgtcggcttatgttctggggaagagtgggttggggattgtgtacaaggtggtgctggggaatgggattccggtggcggtgaggaggttgggggagggcggcgatcagaggtacaaggagttcgcggcggaggttcaggcgatcggtagagtgaagcatcccaacgtggtgaggctgagggcgtactattgggcccccgacgagaagctcttgatcagtgattttatttcgcatgggaacttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

28.8

Weight (kDa)

8.63

Isoelectric Point (pI)

25.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010877)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67510
fragaria_vesca FvH4_4g24010 FvH4_4g24010 FvH4_4g24010
malus_domestica MD13G1116600.v1.1 MD16G1117000.v1.1
prunus_persica Prupe.1G229200_v2.0.a1
pyrus_communis pycom13g10120 pycom16g10010
rosa_chinensis RchiOBHm_Chr4g0430671
rosa_laevigata RLG00000006957
rosa_multiflora Rmu_sc0000131.1_g000012 Rmu_sc0023719.1_g000001
rosa_roxburghii Rroxscaffold_5G00372410
rosa_rugosa Rorug04G0245100
rosa_samantha Rh4AG301200 Rh4BG308300 Rh4CG325500 Rh4DG305900
rosa_wichuraiana Rw4G026150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 182
AccII CGCG 2 cut(s) 147, 690
AclWI GGATC 2 cut(s) 238, 251
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 3 cut(s) 106, 230, 402
AcyI GRCGYC 2 cut(s) 307, 409
AfaI GTAC 4 cut(s) 389, 609, 678, 750
AfiI CCNNNNNNNGG 5 cut(s) 117, 118, 263, 264, 495
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 17, 546
AjnI CCWGG 2 cut(s) 133, 202
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AloI GAACNNNNNNTCC 2 cut(s) 456, 488
AluBI AGCT 4 cut(s) 73, 515, 557, 773
AluI AGCT 4 cut(s) 73, 515, 557, 773
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 238, 251
Ama87I CYCGRG 3 cut(s) 209, 218, 489
AoxI GGCC 4 cut(s) 29, 137, 205, 757
ApaI GGGCCC 2 cut(s) 141, 761
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 3 cut(s) 106, 230, 402
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 5 cut(s) 137, 138, 206, 757, 758
AsuC2I CCSGG 4 cut(s) 219, 220, 241, 277
AsuHPI GGTGA 4 cut(s) 74, 80, 656, 746
AvaI CYCGRG 3 cut(s) 209, 218, 489
BaeGI GKGCMC 2 cut(s) 141, 761
BamHI GGATCC 1 cut(s) 243
BanI GGYRCC 1 cut(s) 408
BanII GRGCYC 2 cut(s) 141, 761
BbvCI CCTCAGC 1 cut(s) 741
BbvI GCAGC 1 cut(s) 544
BceAI ACGGC 2 cut(s) 392, 467
BciT130I CCWGG 2 cut(s) 135, 204
BclI TGATCA 2 cut(s) 283, 778
BcnI CCSGG 4 cut(s) 219, 220, 241, 277
BcoDI GTCTC 1 cut(s) 46
BfoI RGCGCY 1 cut(s) 412
BisI GCNGC 6 cut(s) 101, 310, 313, 558, 665, 691
BlsI GCNGC 6 cut(s) 102, 311, 314, 559, 666, 692
Bme1390I CCNGG 6 cut(s) 135, 204, 219, 220, 241, 277
BmeT110I CYCGRG 3 cut(s) 209, 218, 489
BmgT120I GGNCC 5 cut(s) 137, 138, 206, 757, 758
BmiI GGNNCC 6 cut(s) 139, 208, 245, 410, 759, 760
BmrFI CCNGG 6 cut(s) 135, 204, 219, 220, 241, 277
BmsI GCATC 2 cut(s) 454, 731
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 741
BpuMI CCSGG 4 cut(s) 219, 220, 241, 277
Bsa29I ATCGAT 1 cut(s) 526
BsaHI GRCGYC 2 cut(s) 307, 409
BsaJI CCNNGG 3 cut(s) 134, 217, 218
BsaWI WCCGGW 3 cut(s) 59, 390, 635
BsaXI ACNNNNNCTCC 4 cut(s) 456, 486, 502, 532
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 118, 263, 264, 495
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 357
BseBI CCWGG 2 cut(s) 135, 204
BseCI ATCGAT 1 cut(s) 526
BseDI CCNNGG 3 cut(s) 134, 217, 218
BseGI GGATG 2 cut(s) 286, 722
BseLI CCNNNNNNNGG 5 cut(s) 117, 118, 263, 264, 495
BseMII CTCAG 2 cut(s) 552, 732
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 2 cut(s) 141, 761
BseX3I CGGCCG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 544
BseYI CCCAGC 2 cut(s) 47, 620
Bsh1236I CGCG 2 cut(s) 147, 690
Bsh1285I CGRYCG 3 cut(s) 32, 145, 709
BshFI GGCC 4 cut(s) 31, 139, 207, 759
BshNI GGYRCC 1 cut(s) 408
BshTI ACCGGT 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 526
BsiEI CGRYCG 3 cut(s) 32, 145, 709
BsiHKCI CYCGRG 3 cut(s) 209, 218, 489
BsiSI CCGG 8 cut(s) 28, 32, 60, 219, 241, 276, 391, 636
BslI CCNNNNNNNGG 5 cut(s) 117, 118, 263, 264, 495
BsmAI GTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 4 cut(s) 31, 139, 207, 759
BsoBI CYCGRG 3 cut(s) 209, 218, 489
Bsp120I GGGCCC 2 cut(s) 137, 757
Bsp1286I GDGCHC 2 cut(s) 141, 761
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 6 cut(s) 77, 243, 283, 668, 706, 778
BspANI GGCC 4 cut(s) 31, 139, 207, 759
BspCNI CTCAG 2 cut(s) 553, 733
BspDI ATCGAT 1 cut(s) 526
BspFNI CGCG 2 cut(s) 147, 690
BspLI GGNNCC 6 cut(s) 139, 208, 245, 410, 759, 760
BspPI GGATC 2 cut(s) 238, 251
BspT107I GGYRCC 1 cut(s) 408
BsrBI CCGCTC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 134, 217, 218
BssMI GATC 6 cut(s) 77, 243, 283, 668, 706, 778
BssNI GRCGYC 2 cut(s) 307, 409
Bst2UI CCWGG 2 cut(s) 135, 204
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 2 cut(s) 494, 582
BstACI GRCGYC 2 cut(s) 307, 409
BstAUI TGTACA 1 cut(s) 607
BstDEI CTNAG 2 cut(s) 561, 741
BstEII GGTNACC 1 cut(s) 222
BstF5I GGATG 2 cut(s) 286, 722
BstFNI CGCG 2 cut(s) 147, 690
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 6 cut(s) 80, 246, 286, 671, 709, 781
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 6 cut(s) 77, 243, 283, 668, 706, 778
BstMCI CGRYCG 3 cut(s) 32, 145, 709
BstMWI GCNNNNNNNGC 3 cut(s) 309, 318, 451
BstNI CCWGG 2 cut(s) 135, 204
BstPI GGTNACC 1 cut(s) 222
BstSCI CCNGG 6 cut(s) 133, 202, 217, 218, 239, 275
BstSLI GKGCMC 2 cut(s) 141, 761
BstUI CGCG 2 cut(s) 147, 690
BstV1I GCAGC 1 cut(s) 544
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BstZI CGGCCG 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 526
BsuRI GGCC 4 cut(s) 31, 139, 207, 759
BsuTUI ATCGAT 1 cut(s) 526
BtsCI GGATG 2 cut(s) 286, 722
BtsIMutI CAGTG 1 cut(s) 788
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 5 cut(s) 137, 138, 206, 757, 758
Cfr9I CCCGGG 1 cut(s) 218
ClaI ATCGAT 1 cut(s) 526
CseI GACGC 2 cut(s) 315, 556
Csp6I GTAC 4 cut(s) 388, 608, 677, 749
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 2 cut(s) 385, 798
CviQI GTAC 4 cut(s) 388, 608, 677, 749
DdeI CTNAG 2 cut(s) 561, 741
DinI GGCGCC 1 cut(s) 410
DpnI GATC 6 cut(s) 79, 245, 285, 670, 708, 780
DpnII GATC 6 cut(s) 77, 243, 283, 668, 706, 778
EaeI YGGCCR 1 cut(s) 29
EagI CGGCCG 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 494, 582
EarI CTCTTC 2 cut(s) 494, 582
EciI GGCGGA 1 cut(s) 708
EclXI CGGCCG 1 cut(s) 29
Eco24I GRGCYC 2 cut(s) 141, 761
Eco52I CGGCCG 1 cut(s) 29
Eco88I CYCGRG 3 cut(s) 209, 218, 489
Eco91I GGTNACC 1 cut(s) 222
EcoO109I RGGNCCY 3 cut(s) 137, 206, 758
EcoO65I GGTNACC 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 2 cut(s) 133, 202
EcoT38I GRGCYC 2 cut(s) 141, 761
EgeI GGCGCC 1 cut(s) 410
EheI GGCGCC 1 cut(s) 410
FaeI CATG 2 cut(s) 388, 801
FaiI YATR 4 cut(s) 170, 386, 577, 799
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FatI CATG 2 cut(s) 384, 797
FauI CCCGC 3 cut(s) 165, 447, 493
FbaI TGATCA 2 cut(s) 283, 778
Fnu4HI GCNGC 6 cut(s) 101, 310, 313, 558, 665, 691
FokI GGATG 2 cut(s) 273, 709
FriOI GRGCYC 2 cut(s) 141, 761
Fsp4HI GCNGC 6 cut(s) 101, 310, 313, 558, 665, 691
GlaI GCGC 1 cut(s) 410
GluI GCNGC 6 cut(s) 101, 310, 313, 558, 665, 691
GsaI CCCAGC 2 cut(s) 51, 624
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 4 cut(s) 31, 139, 207, 759
HapII CCGG 8 cut(s) 28, 32, 60, 219, 241, 276, 391, 636
HgaI GACGC 2 cut(s) 315, 556
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 2 cut(s) 307, 409
Hin1II CATG 2 cut(s) 388, 801
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HinfI GANTC 5 cut(s) 35, 272, 430, 471, 632
HpaII CCGG 8 cut(s) 28, 32, 60, 219, 241, 276, 391, 636
HphI GGTGA 4 cut(s) 74, 80, 656, 746
Hpy166II GTNNAC 3 cut(s) 344, 538, 608
Hpy188I TCNGA 6 cut(s) 40, 248, 283, 470, 476, 673
Hpy188III TCNNGA 3 cut(s) 185, 461, 776
Hpy8I GTNNAC 3 cut(s) 344, 538, 608
Hpy99I CGWCG 4 cut(s) 309, 555, 572, 768
HpyAV CCTTC 2 cut(s) 356, 501
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 730
HpyCH4V TGCA 2 cut(s) 196, 445
HpyF10VI GCNNNNNNNGC 3 cut(s) 309, 318, 451
HpyF3I CTNAG 2 cut(s) 561, 741
HpySE526I ACGT 1 cut(s) 730
Hsp92I GRCGYC 2 cut(s) 307, 409
Hsp92II CATG 2 cut(s) 388, 801
HspAI GCGC 1 cut(s) 409
KasI GGCGCC 1 cut(s) 408
Ksp22I TGATCA 2 cut(s) 283, 778
Kzo9I GATC 6 cut(s) 77, 243, 283, 668, 706, 778
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 2 cut(s) 454, 731
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 2 cut(s) 62, 222
MalI GATC 6 cut(s) 79, 245, 285, 670, 708, 780
MbiI CCGCTC 1 cut(s) 182
MboI GATC 6 cut(s) 77, 243, 283, 668, 706, 778
MboII GAAGA 2 cut(s) 511, 599
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 141, 761
MluCI AATT 4 cut(s) 92, 106, 230, 402
Mly113I GGCGCC 1 cut(s) 409
MlyI GAGTC 3 cut(s) 281, 424, 465
MmeI TCCRAC 1 cut(s) 271
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 8 cut(s) 28, 32, 60, 219, 241, 276, 391, 636
MspR9I CCNGG 6 cut(s) 135, 204, 219, 220, 241, 277
Mva1269I GAATGC 1 cut(s) 321
MvaI CCWGG 2 cut(s) 135, 204
MvnI CGCG 2 cut(s) 147, 690
MwoI GCNNNNNNNGC 3 cut(s) 309, 318, 451
NarI GGCGCC 1 cut(s) 409
NciI CCSGG 4 cut(s) 219, 220, 241, 277
NdeII GATC 6 cut(s) 77, 243, 283, 668, 706, 778
NlaIII CATG 2 cut(s) 388, 801
NlaIV GGNNCC 6 cut(s) 139, 208, 245, 410, 759, 760
NmuCI GTSAC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 2 cut(s) 334, 487
PctI GAATGC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 35, 632
PinAI ACCGGT 1 cut(s) 59
PkrI GCNGC 6 cut(s) 102, 311, 314, 559, 666, 692
Ple19I CGATCG 1 cut(s) 709
PleI GAGTC 3 cut(s) 280, 424, 465
PluTI GGCGCC 1 cut(s) 412
PpsI GAGTC 3 cut(s) 280, 424, 465
Psp6I CCWGG 2 cut(s) 133, 202
PspEI GGTNACC 1 cut(s) 222
PspFI CCCAGC 2 cut(s) 47, 620
PspGI CCWGG 2 cut(s) 133, 202
PspN4I GGNNCC 6 cut(s) 139, 208, 245, 410, 759, 760
PspOMI GGGCCC 2 cut(s) 137, 757
PspPI GGNCC 5 cut(s) 137, 138, 206, 757, 758
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PsuI RGATCY 1 cut(s) 243
PvuI CGATCG 1 cut(s) 709
RsaI GTAC 4 cut(s) 389, 609, 678, 750
RsaNI GTAC 4 cut(s) 388, 608, 677, 749
SatI GCNGC 6 cut(s) 101, 310, 313, 558, 665, 691
Sau3AI GATC 6 cut(s) 77, 243, 283, 668, 706, 778
Sau96I GGNCC 5 cut(s) 137, 138, 206, 757, 758
SchI GAGTC 3 cut(s) 281, 424, 465
ScrFI CCNGG 6 cut(s) 135, 204, 219, 220, 241, 277
SduI GDGCHC 2 cut(s) 141, 761
SfaNI GCATC 2 cut(s) 454, 731
SfoI GGCGCC 1 cut(s) 410
SmaI CCCGGG 1 cut(s) 220
Sse9I AATT 4 cut(s) 92, 106, 230, 402
SspDI GGCGCC 1 cut(s) 408
StyD4I CCNGG 6 cut(s) 133, 202, 217, 218, 239, 275
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 733
TaqI TCGA 4 cut(s) 76, 481, 526, 550
TasI AATT 4 cut(s) 92, 106, 230, 402
TatI WGTACW 1 cut(s) 607
TauI GCSGC 5 cut(s) 103, 312, 315, 667, 693
TfiI GAWTC 2 cut(s) 35, 632
TscAI CASTG 1 cut(s) 788
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 314, 373
TspGWI ACGGA 1 cut(s) 287
TspMI CCCGGG 1 cut(s) 218
TspRI CASTG 1 cut(s) 788
XapI RAATTY 3 cut(s) 106, 230, 402
XmaI CCCGGG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.