Rorug04G0245100
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000301
Physical Location & Seq
Reverse (-)
41504166 .. 41506136
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0245100.1

Sequence Viewer

Length: 321 bp
ATGGCGAGCGCGGTGGACGCAGCAGGAGATCCGATCCCGACGTCGGCGGTGCTGACGGCGGCGGCGAAGCACATTCAGTTCAGATGCCAAGAGGAGAACGTGGCCTTCCTCAAGTGCAAGAAGAAGGACCCCAATCCCGAGAAGTGTCTCGACCAAGGTCGCCAAGTCACTCGCTGCGTCCTCACCTTGCTGAAAGATCTTCATCAGAGGTGCACGAAAGAGATGGATGAGTACGTTGGATGCATGTATTACAATACAAATGAATTTGATTTATGTCGCAAAGAGCAGGAGGAATTCGAGAAAAAATGCCCATTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

106

Amino Acids

12.15

Weight (kDa)

5.73

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHCH PF06747 71 - 103 1.4e-07 CHCH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 11, 47, 59, 62
AclWI GGATC 2 cut(s) 23, 28
AcsI RAATTY 2 cut(s) 263, 293
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 43
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 211
AlwI GGATC 2 cut(s) 23, 28
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 102
ApaLI GTGCAC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 20, 174
ApoI RAATTY 2 cut(s) 263, 293
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 32, 161
BccI CCATC 1 cut(s) 217
BceAI ACGGC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 152
BglII AGATCT 1 cut(s) 196
BisI GCNGC 4 cut(s) 21, 60, 63, 175
BlsI GCNGC 4 cut(s) 22, 61, 64, 176
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 129
BmsI GCATC 2 cut(s) 74, 230
BoxI GACNNNNGTC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 2 cut(s) 232, 245
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 43
BseRI GAGGAG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 2 cut(s) 32, 161
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 3 cut(s) 28, 33, 196
BspACI CCGC 4 cut(s) 11, 47, 59, 62
BspANI GGCC 1 cut(s) 104
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 2 cut(s) 23, 28
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 28, 33, 196
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 7
BstF5I GGATG 2 cut(s) 232, 245
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 3 cut(s) 31, 36, 199
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 3 cut(s) 28, 33, 196
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 247
BstPAI GACNNNNGTC 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 215
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 32, 161
BstX2I RGATCY 2 cut(s) 28, 196
BstYI RGATCY 2 cut(s) 28, 196
BsuRI GGCC 1 cut(s) 104
BtsCI GGATG 2 cut(s) 232, 245
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 2 cut(s) 26, 166
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 244
CviJI RGCY 1 cut(s) 104
CviKI_1 RGCY 1 cut(s) 104
CviQI GTAC 1 cut(s) 232
DpnI GATC 3 cut(s) 30, 35, 198
DpnII GATC 3 cut(s) 28, 33, 196
Eco130I CCWWGG 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 1 cut(s) 247
FaiI YATR 2 cut(s) 245, 274
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 21, 60, 63, 175
FokI GGATG 2 cut(s) 239, 252
Fsp4HI GCNGC 4 cut(s) 21, 60, 63, 175
GlaI GCGC 1 cut(s) 10
GluI GCNGC 4 cut(s) 21, 60, 63, 175
HaeIII GGCC 1 cut(s) 104
HgaI GACGC 2 cut(s) 26, 166
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 16, 213
Hpy188I TCNGA 3 cut(s) 33, 83, 207
Hpy188III TCNNGA 4 cut(s) 37, 137, 149, 298
Hpy8I GTNNAC 2 cut(s) 16, 213
Hpy99I CGWCG 2 cut(s) 43, 46
HpyAV CCTTC 2 cut(s) 115, 118
HpyCH4IV ACGT 3 cut(s) 41, 99, 234
HpyCH4V TGCA 3 cut(s) 117, 213, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpySE526I ACGT 3 cut(s) 41, 99, 234
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 3 cut(s) 28, 33, 196
LpnPI CCDG 2 cut(s) 9, 272
Lsp1109I GCAGC 2 cut(s) 32, 161
LweI GCATC 2 cut(s) 74, 230
MaeII ACGT 3 cut(s) 41, 99, 234
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 30, 35, 198
MboI GATC 3 cut(s) 28, 33, 196
MboII GAAGA 2 cut(s) 133, 191
MflI RGATCY 2 cut(s) 28, 196
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 263, 293
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 5 cut(s) 85, 119, 191, 201, 283
Mph1103I ATGCAT 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 316
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 3 cut(s) 28, 33, 196
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 245
NspI RCATGY 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PkrI GCNGC 4 cut(s) 22, 61, 64, 176
PpuMI RGGWCCY 1 cut(s) 127
PshAI GACNNNNGTC 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
PsuI RGATCY 2 cut(s) 28, 196
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 316
SatI GCNGC 4 cut(s) 21, 60, 63, 175
Sau3AI GATC 3 cut(s) 28, 33, 196
Sau96I GGNCC 1 cut(s) 127
SduI GDGCHC 1 cut(s) 215
SetI ASST 6 cut(s) 44, 102, 160, 188, 212, 237
SfaNI GCATC 2 cut(s) 74, 230
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 263, 293
SsiI CCGC 4 cut(s) 11, 47, 59, 62
StyI CCWWGG 1 cut(s) 154
TaiI ACGT 3 cut(s) 44, 102, 237
TaqI TCGA 2 cut(s) 150, 297
TasI AATT 2 cut(s) 263, 293
TauI GCSGC 2 cut(s) 62, 65
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 2 cut(s) 20, 174
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 191, 276
VneI GTGCAC 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 263, 293
XceI RCATGY 1 cut(s) 247
ZraI GACGTC 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.