FvH4_3g18030

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000301
Physical Location & Seq
Reverse (-)
11465138 .. 11465648
511 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18030.t1

Sequence Viewer

Length: 447 bp
ATGATGAAGTTGATGAACGTCTTCTTTACAGTACTACTGGCAACAATGACCATCGTTTCAGCTGAATATCTAGACGATTACAACACCGAAGAGATGCAAAATACCGAATCAACAGCATCTGAAATGCAGGAAGCATCTACTTCTTTTAGAGGGGTGAGCCGCCTCCTGACCCAGCAAAACGTGTTGGCGAGCGTGACTTGCGACAAGTTACCTAGGGTTTGTCATCTGAAGAAGAGCCCAGGGTCGGACTGCTGCAACAAGAAGTGTGTGAATGTGAAGACGGATAGATTGAACTGCGGGATGTGCAGGTACAAGTGCAAGTACACTGAGTTATGCTGCAGGGGGAAGTGCGTGAATGCCATGTTTGACAAAAGGCATTGCGGTGGATGCAACCAGAAGTGCAAACGAGGGGAGTTCTGCGTTTATGGGATGTGCAATTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

149

Amino Acids

16.75

Weight (kDa)

8.68

Isoelectric Point (pI)

25.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 65 - 148 1.2e-29 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
AciI CCGC 3 cut(s) 160, 297, 381
AcuI CTGAAG 1 cut(s) 248
AfaI GTAC 3 cut(s) 33, 311, 323
AfiI CCNNNNNNNGG 1 cut(s) 244
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 238
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 252, 336
Asp700I GAANNNNTTC 1 cut(s) 20
AspA2I CCTAGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 166
AvrII CCTAGG 1 cut(s) 212
BanII GRGCYC 1 cut(s) 239
BbsI GAAGAC 2 cut(s) 13, 284
BbvI GCAGC 2 cut(s) 239, 323
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 240
BfaI CTAG 2 cut(s) 71, 213
BfmI CTRYAG 1 cut(s) 337
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 3 cut(s) 160, 253, 337
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 3 cut(s) 161, 254, 338
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 4 cut(s) 84, 125, 143, 377
BpiI GAAGAC 2 cut(s) 13, 284
BsaJI CCNNGG 3 cut(s) 212, 238, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 376
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 212, 238, 239
BseGI GGATG 3 cut(s) 306, 392, 435
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 239, 323
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 244
BsmI GAATGC 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 239
BspACI CCGC 3 cut(s) 160, 297, 381
BspCNI CTCAG 1 cut(s) 319
BspMAI CTGCAG 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 297
BspQI GCTCTTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 376
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 212, 238, 239
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 2 cut(s) 84, 227
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 3 cut(s) 306, 392, 435
BstMWI GCNNNNNNNGC 3 cut(s) 198, 303, 387
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 239, 323
BstV2I GAAGAC 2 cut(s) 13, 284
BtsCI GGATG 3 cut(s) 306, 392, 435
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 119
Csp6I GTAC 3 cut(s) 32, 310, 322
CviAII CATG 2 cut(s) 361, 444
CviJI RGCY 3 cut(s) 62, 159, 237
CviKI_1 RGCY 3 cut(s) 62, 159, 237
CviQI GTAC 3 cut(s) 32, 310, 322
DdeI CTNAG 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 84, 227
EarI CTCTTC 2 cut(s) 84, 227
Eco130I CCWWGG 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 212
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 2 cut(s) 364, 447
FaiI YATR 5 cut(s) 334, 362, 426, 441, 445
FatI CATG 2 cut(s) 360, 443
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 160, 253, 337
FokI GGATG 3 cut(s) 313, 399, 442
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 160, 253, 337
FspBI CTAG 2 cut(s) 71, 213
GluI GCNGC 3 cut(s) 160, 253, 337
GsaI CCCAGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 364, 447
HinfI GANTC 1 cut(s) 107
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 324
Hpy188I TCNGA 3 cut(s) 121, 228, 247
Hpy188III TCNNGA 2 cut(s) 71, 166
Hpy8I GTNNAC 1 cut(s) 324
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 2 cut(s) 18, 180
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 303, 387
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 2 cut(s) 18, 180
Hsp92II CATG 2 cut(s) 364, 447
LguI GCTCTTC 1 cut(s) 227
LpnPI CCDG 9 cut(s) 23, 113, 179, 185, 225, 252, 292, 325, 407
Lsp1109I GCAGC 2 cut(s) 239, 323
LweI GCATC 4 cut(s) 84, 125, 143, 377
MaeI CTAG 2 cut(s) 71, 213
MaeII ACGT 2 cut(s) 18, 180
MaeIII GTNAC 2 cut(s) 193, 207
MboII GAAGA 5 cut(s) 13, 101, 241, 244, 289
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 3 cut(s) 143, 173, 401
Mph1103I ATGCAT 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 198, 303, 387
NlaIII CATG 2 cut(s) 364, 447
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 445
PasI CCCWGGG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 227
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 3 cut(s) 161, 254, 338
Psp6I CCWGG 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 238
PstI CTGCAG 1 cut(s) 341
PstNI CAGNNNCTG 1 cut(s) 119
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 3 cut(s) 33, 311, 323
RsaNI GTAC 3 cut(s) 32, 310, 322
RseI CAYNNNNRTG 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 227
SatI GCNGC 3 cut(s) 160, 253, 337
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 1 cut(s) 239
SetI ASST 5 cut(s) 21, 64, 183, 214, 311
SfaNI GCATC 4 cut(s) 84, 125, 143, 377
SfcI CTRYAG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 1 cut(s) 436
SsiI CCGC 3 cut(s) 160, 297, 381
SspMI CTAG 2 cut(s) 71, 213
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 2 cut(s) 21, 183
TasI AATT 1 cut(s) 436
TatI WGTACW 2 cut(s) 31, 321
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 107
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 252, 336
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 20, 29
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 1 cut(s) 331
XbaI TCTAGA 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 2 cut(s) 71, 213
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.