AT1G11925

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000301
Physical Location & Seq
Reverse (-)
4025930 .. 4026733
804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11925.1

Sequence Viewer

Length: 423 bp
ATGAATACATTCAAGATATCATATTTCATTATGGTGCTCATAATGGTCTTAGCCATTGCTATAACATTTAGCGAGCCGCTAACGGTTGAAGCAAAACATCAACACAAATATGGTTGGGGGATAGCCGCTTCTGCAAGGAACAAAGGTAGGAAACATTTAGGTGCAACATTGACATGTGACAAAAGCTCCAAGGTATGTCGTCTCAAAGGCAGTCCAGGTCGTAATTGTTGTCGTAAGAAGTGTGTCGATTTGAGGACCAACAAATTGAACTGCGGAAGATGTGGAAAAAGCTGCCAATACTCGGAGGTTTGCTGCAACGGATATTGTGTAAACCCAATGTTTGATAGGAGACATTGTGGAGGTTGCTTTAAGAAGTGCAAGAAAGGGAGATCGTGCGCCTATGGGATGTGCAGCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

140

Amino Acids

15.6

Weight (kDa)

9.59

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 57 - 140 2.4e-28 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 126, 273
AfiI CCNNNNNNNGG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 3 cut(s) 13, 89, 268
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 3 cut(s) 186, 291, 414
AluI AGCT 3 cut(s) 186, 291, 414
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 206, 343
ApeKI GCWGC 3 cut(s) 291, 312, 411
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 255
AvaII GGWCC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 278, 299
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 206, 343
BisI GCNGC 5 cut(s) 77, 126, 292, 313, 412
BlsI GCNGC 5 cut(s) 78, 127, 293, 314, 413
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 189
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 340, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 278, 299
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 2 cut(s) 206, 343
BsmBI CGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 389
BspACI CCGC 3 cut(s) 77, 126, 273
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 411
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 1 cut(s) 392
BstMAI GTCTC 2 cut(s) 206, 343
BstMBI GATC 1 cut(s) 389
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 278, 299
BtsCI GGATG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 255
CviAII CATG 1 cut(s) 174
CviJI RGCY 6 cut(s) 53, 76, 125, 186, 291, 414
CviKI_1 RGCY 6 cut(s) 53, 76, 125, 186, 291, 414
DdeI CTNAG 1 cut(s) 49
DpnI GATC 1 cut(s) 391
DpnII GATC 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 189
Eco32I GATATC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 1 cut(s) 177
FaiI YATR 9 cut(s) 22, 32, 41, 62, 111, 175, 196, 402, 417
FatI CATG 1 cut(s) 173
Fnu4HI GCNGC 5 cut(s) 77, 126, 292, 313, 412
FokI GGATG 1 cut(s) 418
Fsp4HI GCNGC 5 cut(s) 77, 126, 292, 313, 412
GlaI GCGC 1 cut(s) 397
GluI GCNGC 5 cut(s) 77, 126, 292, 313, 412
HhaI GCGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 177
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 331
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 5 cut(s) 134, 164, 315, 378, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 1 cut(s) 177
HspAI GCGC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 2 cut(s) 201, 228
Lsp1109I GCAGC 2 cut(s) 278, 299
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 391
MboI GATC 1 cut(s) 389
MboII GAAGA 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 223, 263
MnlI CCTC 3 cut(s) 246, 298, 353
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 369, 421
MslI CAYNNNNRTG 4 cut(s) 32, 108, 159, 172
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 1 cut(s) 389
NlaIII CATG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 177
PciI ACATGT 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 5 cut(s) 78, 127, 293, 314, 413
PscI ACATGT 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspPI GGNCC 1 cut(s) 255
RseI CAYNNNNRTG 4 cut(s) 32, 108, 159, 172
SaqAI TTAA 2 cut(s) 369, 421
SatI GCNGC 5 cut(s) 77, 126, 292, 313, 412
Sau3AI GATC 1 cut(s) 389
Sau96I GGNCC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 39
SetI ASST 9 cut(s) 148, 163, 188, 195, 220, 293, 309, 364, 416
SinI GGWCC 1 cut(s) 255
SmiMI CAYNNNNRTG 4 cut(s) 32, 108, 159, 172
Sse9I AATT 2 cut(s) 223, 263
SsiI CCGC 3 cut(s) 77, 126, 273
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 223, 263
TauI GCSGC 2 cut(s) 79, 128
Tru1I TTAA 2 cut(s) 369, 421
Tru9I TTAA 2 cut(s) 369, 421
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 3 cut(s) 291, 312, 411
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 16, 17
TspGWI ACGGA 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 255
XceI RCATGY 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.