Rmu_sc0013444.1_g000002

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013444.1
OG0000301
Physical Location & Seq
Forward (+)
16189 .. 16536
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013444.1_g000002.1.cds

Sequence Viewer

Length: 348 bp
atgcaaattcaaaataccgaatcaacagtgtctgaaatgcaggaagcaacaacttctttgagaggggtaagccgcttcctgacccagcagaacctgttggcaagtgtgacttgcgacaagttacctagggtttgtcgtctgaagaagagcccggggtctgactgctgcaaccagaagtgtgtgaatttgaagacggatagattgaattgcgggatgtgccggtacaagtgcaagtacactgagatttgctgcagaggaaaatgcgtgaatgcatcgtttgacgaaaagcattgcggtggatgcaaccagaagtgcaataaaggggagttttgtgttttggggatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

115

Amino Acids

12.85

Weight (kDa)

8.84

Isoelectric Point (pI)

20.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 73, 210, 294
AcsI RAATTY 2 cut(s) 6, 184
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 2 cut(s) 224, 236
AgsI TTSAA 3 cut(s) 11, 190, 205
AlwNI CAGNNNCTG 2 cut(s) 32, 94
Ama87I CYCGRG 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 165, 249
ApoI RAATTY 2 cut(s) 6, 184
AspA2I CCTAGG 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 152, 153
AvaI CYCGRG 1 cut(s) 151
AvrII CCTAGG 1 cut(s) 125
BanII GRGCYC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 152, 236
BcnI CCSGG 2 cut(s) 152, 153
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 250
BisI GCNGC 3 cut(s) 73, 166, 250
BlnI CCTAGG 1 cut(s) 125
BlsI GCNGC 3 cut(s) 74, 167, 251
Bme1390I CCNGG 2 cut(s) 152, 153
BmeT110I CYCGRG 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 152, 153
BmsI GCATC 2 cut(s) 281, 290
BpiI GAAGAC 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 152, 153
BsaJI CCNNGG 3 cut(s) 125, 151, 152
Bse118I RCCGGY 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 289
BseDI CCNNGG 3 cut(s) 125, 151, 152
BseGI GGATG 3 cut(s) 219, 305, 348
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 152, 236
BseYI CCCAGC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 2 cut(s) 152, 220
BsmI GAATGC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 152
BspACI CCGC 3 cut(s) 73, 210, 294
BspCNI CTCAG 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 125, 151, 152
BssT1I CCWWGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 219, 305, 348
BstMWI GCNNNNNNNGC 2 cut(s) 216, 300
BstSCI CCNGG 2 cut(s) 150, 151
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 152, 236
BstV2I GAAGAC 1 cut(s) 197
BtsCI GGATG 3 cut(s) 219, 305, 348
BtsIMutI CAGTG 2 cut(s) 33, 237
CaiI CAGNNNCTG 2 cut(s) 32, 94
Cfr10I RCCGGY 1 cut(s) 219
Cfr9I CCCGGG 1 cut(s) 151
Csp6I GTAC 2 cut(s) 223, 235
CviJI RGCY 2 cut(s) 72, 150
CviKI_1 RGCY 2 cut(s) 72, 150
CviQI GTAC 2 cut(s) 223, 235
DdeI CTNAG 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 125
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 3 cut(s) 73, 166, 250
FokI GGATG 2 cut(s) 226, 312
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 3 cut(s) 73, 166, 250
FspBI CTAG 1 cut(s) 126
GluI GCNGC 3 cut(s) 73, 166, 250
GsaI CCCAGC 1 cut(s) 88
HapII CCGG 2 cut(s) 152, 220
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 152, 220
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 3 cut(s) 34, 141, 160
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 8 cut(s) 4, 40, 168, 231, 252, 272, 303, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 300
HpyF3I CTNAG 1 cut(s) 240
LguI GCTCTTC 1 cut(s) 140
LpnPI CCDG 8 cut(s) 26, 92, 98, 107, 165, 185, 233, 320
Lsp1109I GCAGC 2 cut(s) 152, 236
LweI GCATC 2 cut(s) 281, 290
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 106, 120
MboII GAAGA 3 cut(s) 154, 157, 202
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 3 cut(s) 6, 184, 205
MnlI CCTC 2 cut(s) 56, 248
Mph1103I ATGCAT 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 152, 220
MspR9I CCNGG 2 cut(s) 152, 153
Mva1269I GAATGC 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 216, 300
NciI CCSGG 2 cut(s) 152, 153
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 140
PctI GAATGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 3 cut(s) 74, 167, 251
PspFI CCCAGC 1 cut(s) 84
PstI CTGCAG 1 cut(s) 254
PstNI CAGNNNCTG 2 cut(s) 32, 94
RsaI GTAC 2 cut(s) 224, 236
RsaNI GTAC 2 cut(s) 223, 235
RseI CAYNNNNRTG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 140
SatI GCNGC 3 cut(s) 73, 166, 250
ScrFI CCNGG 2 cut(s) 152, 153
SduI GDGCHC 1 cut(s) 152
SetI ASST 2 cut(s) 96, 127
SfaNI GCATC 2 cut(s) 281, 290
SfcI CTRYAG 1 cut(s) 250
SmaI CCCGGG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 3 cut(s) 6, 184, 205
SsiI CCGC 3 cut(s) 73, 210, 294
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 150, 151
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 28
TasI AATT 3 cut(s) 6, 184, 205
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 2 cut(s) 33, 244
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 165, 249
Tsp45I GTSAC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 209
TspMI CCCGGG 1 cut(s) 151
TspRI CASTG 2 cut(s) 33, 244
XapI RAATTY 2 cut(s) 6, 184
XmaI CCCGGG 1 cut(s) 151
XmaJI CCTAGG 1 cut(s) 125
XspI CTAG 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.