Rmu_co8421345.1_g000001

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8421345.1
OG0000301
Physical Location & Seq
Forward (+)
544 .. 981
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8421345.1_g000001.1.cds

Sequence Viewer

Length: 438 bp
atgaactgtcataaggttttccttctgctagccatgctgatgatggcttcagccggtacgctttctgcgacactagacgaagaagaatcatcattcttcaacgaggataacaacgtccaaaaccaagaaaaaacttctctcaggggaacaagcagcgtcttctttgcttctcggtcagtgacagcgtcaacatgtgacaaaaaccctaaggtttgtgcggctgccgcggacggctcggagtgctgcagtaagaagtgcgtggatttgaagacggacagactcaattgcgggaaatgtggggtgaaatgcaagcagacagagatatgctgcaatggtcatattgtgactccaatgtctgacaagaaaaactgtgggagatgcaacaatgcttgcaagggacgcaactcatgcgcgtttgggatgtgcagctatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

145

Amino Acids

15.57

Weight (kDa)

8.32

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 352
AccII CGCG 2 cut(s) 227, 413
AciI CCGC 4 cut(s) 218, 225, 227, 288
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 58
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 2 cut(s) 100, 268
AluBI AGCT 1 cut(s) 429
AluI AGCT 1 cut(s) 429
ApeKI GCWGC 5 cut(s) 153, 221, 243, 327, 426
AspLEI GCGC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 151, 275
BbvI GCAGC 4 cut(s) 165, 208, 230, 314
BccI CCATC 1 cut(s) 37
BceAI ACGGC 1 cut(s) 247
BfaI CTAG 2 cut(s) 29, 74
BfmI CTRYAG 1 cut(s) 244
BisI GCNGC 7 cut(s) 154, 219, 222, 225, 244, 328, 427
BlsI GCNGC 7 cut(s) 155, 220, 223, 226, 245, 329, 428
BmsI GCATC 1 cut(s) 368
BmtI GCTAGC 1 cut(s) 32
BpiI GAAGAC 2 cut(s) 151, 275
BsaJI CCNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 426
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 154
BseXI GCAGC 4 cut(s) 165, 208, 230, 314
Bsh1236I CGCG 2 cut(s) 227, 413
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 411
BspACI CCGC 4 cut(s) 218, 225, 227, 288
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 2 cut(s) 227, 413
BspMAI CTGCAG 1 cut(s) 248
BspOI GCTAGC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 225
Bst4CI ACNGT 2 cut(s) 8, 371
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 30, 311, 391
BstDEI CTNAG 2 cut(s) 140, 207
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 2 cut(s) 227, 413
BstHHI GCGC 1 cut(s) 413
BstMWI GCNNNNNNNGC 5 cut(s) 34, 224, 240, 399, 408
BstNSI RCATGY 1 cut(s) 195
BstSFI CTRYAG 1 cut(s) 244
BstUI CGCG 2 cut(s) 227, 413
BstV1I GCAGC 4 cut(s) 165, 208, 230, 314
BstV2I GAAGAC 2 cut(s) 151, 275
Bsu36I CCTNAGG 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 3 cut(s) 30, 311, 391
CfoI GCGC 1 cut(s) 413
Cfr10I RCCGGY 1 cut(s) 53
Cfr42I CCGCGG 1 cut(s) 228
CseI GACGC 3 cut(s) 145, 174, 408
Csp6I GTAC 1 cut(s) 57
CviAII CATG 3 cut(s) 34, 192, 408
CviJI RGCY 6 cut(s) 32, 47, 53, 221, 234, 429
CviKI_1 RGCY 6 cut(s) 32, 47, 53, 221, 234, 429
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 140, 207
DrdI GACNNNNNNGTC 1 cut(s) 352
DseDI GACNNNNNNGTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 436
FaeI CATG 3 cut(s) 37, 195, 411
FaiI YATR 8 cut(s) 12, 35, 193, 325, 339, 409, 432, 436
FaqI GGGAC 1 cut(s) 411
FatI CATG 3 cut(s) 33, 191, 407
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 7 cut(s) 154, 219, 222, 225, 244, 328, 427
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 7 cut(s) 154, 219, 222, 225, 244, 328, 427
FspBI CTAG 2 cut(s) 29, 74
GlaI GCGC 1 cut(s) 412
GluI GCNGC 7 cut(s) 154, 219, 222, 225, 244, 328, 427
HapII CCGG 1 cut(s) 54
HgaI GACGC 3 cut(s) 145, 174, 408
HhaI GCGC 1 cut(s) 413
Hin1II CATG 3 cut(s) 37, 195, 411
Hin6I GCGC 1 cut(s) 411
HinP1I GCGC 1 cut(s) 411
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 3 cut(s) 86, 279, 346
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 2 cut(s) 238, 358
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 8, 371
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 7 cut(s) 246, 309, 330, 381, 393, 426, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 224, 240, 399, 408
HpyF3I CTNAG 2 cut(s) 140, 207
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 3 cut(s) 37, 195, 411
HspAI GCGC 1 cut(s) 411
KspI CCGCGG 1 cut(s) 228
LpnPI CCDG 2 cut(s) 67, 127
Lsp1109I GCAGC 4 cut(s) 165, 208, 230, 314
LweI GCATC 1 cut(s) 368
MaeI CTAG 2 cut(s) 29, 74
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 178, 194, 343
MboII GAAGA 5 cut(s) 88, 92, 95, 151, 280
MfeI CAATTG 1 cut(s) 283
MluCI AATT 1 cut(s) 283
MlyI GAGTC 2 cut(s) 273, 340
MnlI CCTC 1 cut(s) 97
Mph1103I ATGCAT 1 cut(s) 436
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 283
MvnI CGCG 2 cut(s) 227, 413
MwoI GCNNNNNNNGC 5 cut(s) 34, 224, 240, 399, 408
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 3 cut(s) 37, 195, 411
NmuCI GTSAC 3 cut(s) 178, 194, 343
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 195
PciI ACATGT 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 1 cut(s) 86
PflFI GACNNNGTC 1 cut(s) 184
PkrI GCNGC 7 cut(s) 155, 220, 223, 226, 245, 329, 428
PleI GAGTC 2 cut(s) 273, 340
PpsI GAGTC 2 cut(s) 273, 340
PscI ACATGT 1 cut(s) 191
PstI CTGCAG 1 cut(s) 248
PsyI GACNNNGTC 1 cut(s) 184
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 38
SacII CCGCGG 1 cut(s) 228
SatI GCNGC 7 cut(s) 154, 219, 222, 225, 244, 328, 427
SchI GAGTC 2 cut(s) 273, 340
SetI ASST 4 cut(s) 18, 117, 213, 431
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 244
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 1 cut(s) 283
SsiI CCGC 4 cut(s) 218, 225, 227, 288
SspMI CTAG 2 cut(s) 29, 74
TaaI ACNGT 2 cut(s) 8, 371
TaiI ACGT 1 cut(s) 117
TaqII GACCGA 1 cut(s) 162
TasI AATT 1 cut(s) 283
TauI GCSGC 2 cut(s) 221, 227
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 3 cut(s) 178, 194, 343
TseI GCWGC 5 cut(s) 153, 221, 243, 327, 426
Tsp45I GTSAC 3 cut(s) 178, 194, 343
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 1 cut(s) 183
Tth111I GACNNNGTC 1 cut(s) 184
XceI RCATGY 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XspI CTAG 2 cut(s) 29, 74
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.