Rmu_sc0001717.1_g000007

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001717.1
OG0000301
Physical Location & Seq
Forward (+)
29787 .. 30227
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001717.1_g000007.1.cds

Sequence Viewer

Length: 441 bp
atgatagtatccaaaattgtgttcaccctaatcttcgtgttgttgggtatagccattgcccattcagcaacaccaactgtcgaagaggagccccaactcaaccttaacgagctttcgtccgcaatggcatctctgcgagggattggtggccggttccttgcggagcaagtacgagccacaccgaccacatgtgacaagaatccgacattctgtaagagcaagggcagtgcagggcctaactgctgcagcaaaaattgcgtcaatgtaacgacggatacaaacaattgcgggcggtgtggagtgaagtgtaagtactcggaactctgctgcaacggtgtttgtgtgaatccgtctgtcaatggcaaacattgtggcaagtgcggcaacaagtgtggaaaaggaagctcatgcttgtatggcctgtgcagctatgcgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

146

Amino Acids

15.3

Weight (kDa)

8.7

Isoelectric Point (pI)

19.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 120, 161, 288, 292, 381
AcoI YGGCCR 1 cut(s) 148
AfaI GTAC 2 cut(s) 171, 314
AflIII ACRYGT 1 cut(s) 188
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 112, 405, 429
AluI AGCT 3 cut(s) 112, 405, 429
AoxI GGCC 3 cut(s) 148, 233, 418
ApeKI GCWGC 4 cut(s) 243, 246, 327, 426
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 16
BanII GRGCYC 1 cut(s) 93
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbvI GCAGC 3 cut(s) 230, 258, 314
BciVI GTATCC 2 cut(s) 19, 268
BfmI CTRYAG 1 cut(s) 244
BfuI GTATCC 2 cut(s) 19, 268
BisI GCNGC 5 cut(s) 244, 247, 328, 382, 427
BlsI GCNGC 5 cut(s) 245, 248, 329, 383, 428
BmcAI AGTACT 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 90, 155
BmsI GCATC 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 150
Bse3DI GCAATG 2 cut(s) 54, 129
BseMI GCAATG 2 cut(s) 54, 129
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 3 cut(s) 230, 258, 314
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 3 cut(s) 150, 235, 420
BsiSI CCGG 1 cut(s) 151
BsnI GGCC 3 cut(s) 150, 235, 420
Bsp1286I GDGCHC 1 cut(s) 93
BspACI CCGC 5 cut(s) 120, 161, 288, 292, 381
BspANI GGCC 3 cut(s) 150, 235, 420
BspLI GGNNCC 2 cut(s) 90, 155
BspMAI CTGCAG 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 54, 129
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 79, 335
Bst6I CTCTTC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 290
BstMWI GCNNNNNNNGC 5 cut(s) 65, 255, 381, 417, 426
BstNSI RCATGY 1 cut(s) 192
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 3 cut(s) 230, 258, 314
BsuI GTATCC 2 cut(s) 19, 268
BsuRI GGCC 3 cut(s) 150, 235, 420
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 233
CseI GACGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 170, 313
CspCI CAANNNNNGTGG 4 cut(s) 352, 373, 387, 408
CviAII CATG 2 cut(s) 189, 408
CviJI RGCY 9 cut(s) 53, 91, 112, 150, 176, 235, 405, 420, 429
CviKI_1 RGCY 9 cut(s) 53, 91, 112, 150, 176, 235, 405, 420, 429
CviQI GTAC 2 cut(s) 170, 313
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 2 cut(s) 192, 411
FaiI YATR 5 cut(s) 50, 190, 409, 417, 432
FatI CATG 2 cut(s) 188, 407
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 5 cut(s) 244, 247, 328, 382, 427
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 244, 247, 328, 382, 427
GluI GCNGC 5 cut(s) 244, 247, 328, 382, 427
HaeIII GGCC 3 cut(s) 150, 235, 420
HapII CCGG 1 cut(s) 151
HgaI GACGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 192, 411
HinfI GANTC 2 cut(s) 199, 346
HpaII CCGG 1 cut(s) 151
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 204, 319
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 79, 335
HpyCH4V TGCA 4 cut(s) 230, 246, 330, 426
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 255, 381, 417, 426
Hsp92II CATG 2 cut(s) 192, 411
LmnI GCTCC 2 cut(s) 88, 163
LpnPI CCDG 3 cut(s) 164, 216, 434
Lsp1109I GCAGC 3 cut(s) 230, 258, 314
LweI GCATC 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 191, 265
MboII GAAGA 2 cut(s) 25, 95
MfeI CAATTG 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 4 cut(s) 15, 253, 283, 436
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 2 cut(s) 79, 131
MseI TTAA 1 cut(s) 105
MspI CCGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 283
MwoI GCNNNNNNNGC 5 cut(s) 65, 255, 381, 417, 426
NlaIII CATG 2 cut(s) 192, 411
NlaIV GGNNCC 2 cut(s) 90, 155
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 192
PciI ACATGT 1 cut(s) 188
PfeI GAWTC 2 cut(s) 199, 346
PkrI GCNGC 5 cut(s) 245, 248, 329, 383, 428
PscI ACATGT 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 90, 155
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 248
RsaI GTAC 2 cut(s) 171, 314
RsaNI GTAC 2 cut(s) 170, 313
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 5 cut(s) 244, 247, 328, 382, 427
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 314
SduI GDGCHC 1 cut(s) 93
SetI ASST 4 cut(s) 105, 114, 407, 431
SfaNI GCATC 1 cut(s) 137
SfcI CTRYAG 1 cut(s) 244
Sse9I AATT 4 cut(s) 15, 253, 283, 436
SsiI CCGC 5 cut(s) 120, 161, 288, 292, 381
TaaI ACNGT 2 cut(s) 79, 335
TaqI TCGA 1 cut(s) 81
TasI AATT 4 cut(s) 15, 253, 283, 436
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 2 cut(s) 199, 346
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 4 cut(s) 243, 246, 327, 426
Tsp45I GTSAC 1 cut(s) 191
TspGWI ACGGA 2 cut(s) 287, 339
TspRI CASTG 1 cut(s) 232
XceI RCATGY 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.