Rmu_sc0039536.1_g000001

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039536.1
OG0000301
Physical Location & Seq
Reverse (-)
8741 .. 9145
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039536.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atgctgatgatggcttcagccggtacgctttctgcgacactagacgaagaagaatcatcattcttcaacgaggataacaacgtccaaaaccaagaaaaaacttctctcaggggaacaagcagcgtcttctttgcttctcggttagtgacagcgtcaacatgtgacaaaaaccctaaggtttgtgcggctgccgcggacggctcggagtgctgcagtaagaagtgcgtggatttgaagacggacagactcaattgcgggaaatgtggggtgaaatgcaagcagacagagatatgctgcaatggtcatattgtgactccaatgtctgacaagaaaaactgtgggagatgcaacaatgcttgcaagggacgcaactcatgcgcgtttgggatgtgcagctatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

134

Amino Acids

14.33

Weight (kDa)

8.16

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 319
AccII CGCG 2 cut(s) 194, 380
AciI CCGC 4 cut(s) 185, 192, 194, 255
AfaI GTAC 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 2 cut(s) 67, 235
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
ApeKI GCWGC 5 cut(s) 120, 188, 210, 294, 393
AspLEI GCGC 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 280
AxyI CCTNAGG 1 cut(s) 174
BbsI GAAGAC 2 cut(s) 118, 242
BbvI GCAGC 4 cut(s) 132, 175, 197, 281
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 214
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 211
BisI GCNGC 7 cut(s) 121, 186, 189, 192, 211, 295, 394
BlsI GCNGC 7 cut(s) 122, 187, 190, 193, 212, 296, 395
BmsI GCATC 1 cut(s) 335
BpiI GAAGAC 2 cut(s) 118, 242
BsaJI CCNNGG 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 20
Bse21I CCTNAGG 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 393
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 121
BseXI GCAGC 4 cut(s) 132, 175, 197, 281
Bsh1236I CGCG 2 cut(s) 194, 380
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 378
BspACI CCGC 4 cut(s) 185, 192, 194, 255
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 2 cut(s) 194, 380
BspMAI CTGCAG 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 338
BstAPI GCANNNNNTGC 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 278, 358
BstDEI CTNAG 2 cut(s) 107, 174
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 393
BstFNI CGCG 2 cut(s) 194, 380
BstHHI GCGC 1 cut(s) 380
BstMWI GCNNNNNNNGC 4 cut(s) 191, 207, 366, 375
BstNSI RCATGY 1 cut(s) 162
BstSFI CTRYAG 1 cut(s) 211
BstUI CGCG 2 cut(s) 194, 380
BstV1I GCAGC 4 cut(s) 132, 175, 197, 281
BstV2I GAAGAC 2 cut(s) 118, 242
Bsu36I CCTNAGG 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 278, 358
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 20
Cfr42I CCGCGG 1 cut(s) 195
CseI GACGC 3 cut(s) 112, 141, 375
Csp6I GTAC 1 cut(s) 24
CviAII CATG 2 cut(s) 159, 375
CviJI RGCY 5 cut(s) 14, 20, 188, 201, 396
CviKI_1 RGCY 5 cut(s) 14, 20, 188, 201, 396
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 107, 174
DrdI GACNNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 403
FaeI CATG 2 cut(s) 162, 378
FaiI YATR 6 cut(s) 160, 292, 306, 376, 399, 403
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 158, 374
FauI CCCGC 1 cut(s) 248
Fnu4HI GCNGC 7 cut(s) 121, 186, 189, 192, 211, 295, 394
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 7 cut(s) 121, 186, 189, 192, 211, 295, 394
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 379
GluI GCNGC 7 cut(s) 121, 186, 189, 192, 211, 295, 394
HapII CCGG 1 cut(s) 21
HgaI GACGC 3 cut(s) 112, 141, 375
HhaI GCGC 1 cut(s) 380
Hin1II CATG 2 cut(s) 162, 378
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 3 cut(s) 53, 246, 313
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 205, 325
Hpy8I GTNNAC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 7 cut(s) 213, 276, 297, 348, 360, 393, 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 207, 366, 375
HpyF3I CTNAG 2 cut(s) 107, 174
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 162, 378
HspAI GCGC 1 cut(s) 378
KspI CCGCGG 1 cut(s) 195
LpnPI CCDG 2 cut(s) 34, 94
Lsp1109I GCAGC 4 cut(s) 132, 175, 197, 281
LweI GCATC 1 cut(s) 335
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 145, 161, 310
MboII GAAGA 5 cut(s) 55, 59, 62, 118, 247
MfeI CAATTG 1 cut(s) 250
MluCI AATT 1 cut(s) 250
MlyI GAGTC 2 cut(s) 240, 307
MnlI CCTC 1 cut(s) 64
Mph1103I ATGCAT 1 cut(s) 403
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 250
MvnI CGCG 2 cut(s) 194, 380
MwoI GCNNNNNNNGC 4 cut(s) 191, 207, 366, 375
NlaIII CATG 2 cut(s) 162, 378
NmuCI GTSAC 3 cut(s) 145, 161, 310
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 1 cut(s) 162
PciI ACATGT 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 7 cut(s) 122, 187, 190, 193, 212, 296, 395
PleI GAGTC 2 cut(s) 240, 307
PpsI GAGTC 2 cut(s) 240, 307
PscI ACATGT 1 cut(s) 158
PstI CTGCAG 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SacII CCGCGG 1 cut(s) 195
SatI GCNGC 7 cut(s) 121, 186, 189, 192, 211, 295, 394
SchI GAGTC 2 cut(s) 240, 307
SetI ASST 3 cut(s) 84, 180, 398
SfaNI GCATC 1 cut(s) 335
SfcI CTRYAG 1 cut(s) 211
Sfr303I CCGCGG 1 cut(s) 195
SgrBI CCGCGG 1 cut(s) 195
Sse9I AATT 1 cut(s) 250
SsiI CCGC 4 cut(s) 185, 192, 194, 255
SspMI CTAG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 84
TasI AATT 1 cut(s) 250
TauI GCSGC 2 cut(s) 188, 194
TfiI GAWTC 1 cut(s) 53
TseFI GTSAC 3 cut(s) 145, 161, 310
TseI GCWGC 5 cut(s) 120, 188, 210, 294, 393
Tsp45I GTSAC 3 cut(s) 145, 161, 310
TspGWI ACGGA 1 cut(s) 254
Tth111I GACNNNGTC 1 cut(s) 151
XceI RCATGY 1 cut(s) 162
XspI CTAG 1 cut(s) 41
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.