Rmu_sc0003568.1_g000001

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003568.1
OG0000301
Physical Location & Seq
Reverse (-)
1606 .. 2025
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003568.1_g000001.1.cds

Sequence Viewer

Length: 420 bp
atgaatatcgaagcaaagcccactgtacaggaagagaaagatgatcatcaagaagtcgccattgatgattctctgaactctcctgacaatgaaactgaatcaaactccttcttacacagaaatgaccgctctctgaggcaaaagataagaacacatatggtgcggttgacctgtaacaagttccccaggatatgttatactaagggaagcccaggacctcattgctgcaagaagaagtgtgttaatgttttaacagacaagcttaattgtgggaaatgtggaaagaaatgcaagtacagtgaggtttgctgcaaagggaaatgtgtgaatccatctttcaaccggagtcattgtggtggatgtaacaataggtgcaaagatggagggttttgtgcattcggcatatgcaattatgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

139

Amino Acids

15.6

Weight (kDa)

8.86

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 129
AciI CCGC 2 cut(s) 127, 163
AfaI GTAC 2 cut(s) 27, 296
AgsI TTSAA 1 cut(s) 340
AjnI CCWGG 2 cut(s) 185, 211
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
ApeKI GCWGC 2 cut(s) 225, 309
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 212, 296
BccI CCATC 2 cut(s) 340, 374
BciT130I CCWGG 2 cut(s) 187, 213
BclI TGATCA 1 cut(s) 43
BisI GCNGC 2 cut(s) 226, 310
BlsI GCNGC 2 cut(s) 227, 311
Bme1390I CCNGG 2 cut(s) 187, 213
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 2 cut(s) 187, 213
BsaBI GATNNNNATC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 185, 211
BsaWI WCCGGW 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bse3DI GCAATG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 2 cut(s) 187, 213
BseDI CCNNGG 2 cut(s) 185, 211
BseGI GGATG 1 cut(s) 365
BseJI GATNNNNATC 1 cut(s) 45
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 212, 296
BsiSI CCGG 1 cut(s) 343
BsmI GAATGC 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 25
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 2 cut(s) 127, 163
BspCNI CTCAG 1 cut(s) 126
BsrBI CCGCTC 1 cut(s) 129
BsrDI GCAATG 1 cut(s) 220
BsrGI TGTACA 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 185, 211
BssMI GATC 1 cut(s) 43
Bst2UI CCWGG 2 cut(s) 187, 213
Bst4CI ACNGT 2 cut(s) 25, 299
Bst6I CTCTTC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 25
BstDEI CTNAG 2 cut(s) 134, 201
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 2 cut(s) 187, 213
BstSCI CCNGG 2 cut(s) 185, 211
BstV1I GCAGC 2 cut(s) 212, 296
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 21, 304
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 26, 295
CviJI RGCY 3 cut(s) 19, 210, 262
CviKI_1 RGCY 3 cut(s) 19, 210, 262
CviQI GTAC 2 cut(s) 26, 295
DdeI CTNAG 2 cut(s) 134, 201
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 185, 211
EcoT22I ATGCAT 1 cut(s) 418
FaiI YATR 8 cut(s) 156, 158, 193, 198, 404, 406, 414, 418
FauNDI CATATG 2 cut(s) 156, 404
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 226, 310
FokI GGATG 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 226, 310
GluI GCNGC 2 cut(s) 226, 310
HapII CCGG 1 cut(s) 343
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 4 cut(s) 68, 98, 328, 346
HpaII CCGG 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 75, 135
Hpy188III TCNNGA 2 cut(s) 50, 83
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 25, 299
HpyCH4V TGCA 7 cut(s) 228, 291, 312, 375, 395, 408, 416
HpyF3I CTNAG 2 cut(s) 134, 201
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 8 cut(s) 14, 96, 172, 184, 198, 199, 225, 356
Lsp1109I GCAGC 2 cut(s) 212, 296
MaeIII GTNAC 2 cut(s) 173, 362
MalI GATC 1 cut(s) 45
MbiI CCGCTC 1 cut(s) 129
MboI GATC 1 cut(s) 43
MboII GAAGA 2 cut(s) 44, 244
MluCI AATT 2 cut(s) 265, 409
MlyI GAGTC 1 cut(s) 355
MnlI CCTC 4 cut(s) 129, 228, 295, 377
Mph1103I ATGCAT 1 cut(s) 418
MseI TTAA 3 cut(s) 243, 251, 264
MslI CAYNNNNRTG 2 cut(s) 120, 354
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 187, 213
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 2 cut(s) 187, 213
NdeI CATATG 2 cut(s) 156, 404
NdeII GATC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 418
PctI GAATGC 1 cut(s) 395
PfeI GAWTC 3 cut(s) 68, 98, 328
PkrI GCNGC 2 cut(s) 227, 311
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 2 cut(s) 185, 211
PspGI CCWGG 2 cut(s) 185, 211
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
RsaI GTAC 2 cut(s) 27, 296
RsaNI GTAC 2 cut(s) 26, 295
RseI CAYNNNNRTG 2 cut(s) 120, 354
SaqAI TTAA 3 cut(s) 243, 251, 264
SatI GCNGC 2 cut(s) 226, 310
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 2 cut(s) 187, 213
SetI ASST 5 cut(s) 173, 220, 264, 306, 374
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 120, 354
Sse9I AATT 2 cut(s) 265, 409
SsiI CCGC 2 cut(s) 127, 163
StyD4I CCNGG 2 cut(s) 185, 211
TaaI ACNGT 2 cut(s) 25, 299
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 265, 409
TatI WGTACW 2 cut(s) 25, 294
TfiI GAWTC 3 cut(s) 68, 98, 328
Tru1I TTAA 3 cut(s) 243, 251, 264
Tru9I TTAA 3 cut(s) 243, 251, 264
TscAI CASTG 2 cut(s) 28, 304
TseI GCWGC 2 cut(s) 225, 309
TspDTI ATGAA 2 cut(s) 17, 105
TspRI CASTG 2 cut(s) 28, 304
VpaK11BI GGWCC 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.