RchiOBHm_Chr5g0002441

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000301
Physical Location & Seq
Forward (+)
1416967 .. 1417284
318 bp
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UTR
Exon/CDS
Intron
PRQ28382

Sequence Viewer

Length: 318 bp
ATGGCATCTCTGCGAGGGATTGGTGGCCGGTTCCTTGCGGAGCAAGTACGAGCCACACTGACCACATGTGACAAGAATCCGACAGTCTGTAAGAGCAAGGGCAGCGCAGGGCCTAACTGCTGCAGCAAAAATTGCGTCAATGTAACGACGGATACAAACAATTGCGGGCGATGTGGAGTGAAGTGTAAGTACTCGGAACTCTGCTGCAACGGTGTTTGTGTGAATCCGTCTGTCAATGGCAAACATTGTGGCAAGTGCGGCAACAAGTGTGGAAAAGGAAGCTCATGCTTGTATGGCCTGTGCAGCTATGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

105

Amino Acids

10.87

Weight (kDa)

8.99

Isoelectric Point (pI)

14.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 21 - 104 1.2e-28 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 38, 165, 258
AcoI YGGCCR 1 cut(s) 25
AfaI GTAC 2 cut(s) 48, 191
AflIII ACRYGT 1 cut(s) 65
AluBI AGCT 2 cut(s) 282, 306
AluI AGCT 2 cut(s) 282, 306
AoxI GGCC 3 cut(s) 25, 110, 295
ApeKI GCWGC 5 cut(s) 102, 120, 123, 204, 303
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 110
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbvI GCAGC 4 cut(s) 107, 114, 135, 191
BciVI GTATCC 1 cut(s) 145
BfmI CTRYAG 1 cut(s) 121
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 6 cut(s) 103, 121, 124, 205, 259, 304
BlsI GCNGC 6 cut(s) 104, 122, 125, 206, 260, 305
BmcAI AGTACT 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 32
BmsI GCATC 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 27
BseXI GCAGC 4 cut(s) 107, 114, 135, 191
BshFI GGCC 3 cut(s) 27, 112, 297
BsiSI CCGG 1 cut(s) 28
BsnI GGCC 3 cut(s) 27, 112, 297
BspACI CCGC 3 cut(s) 38, 165, 258
BspANI GGCC 3 cut(s) 27, 112, 297
BspLI GGNNCC 1 cut(s) 32
BspMAI CTGCAG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 85, 212
BstAPI GCANNNNNTGC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 167
BstHHI GCGC 1 cut(s) 107
BstMWI GCNNNNNNNGC 5 cut(s) 102, 132, 258, 294, 303
BstNSI RCATGY 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 121
BstV1I GCAGC 4 cut(s) 107, 114, 135, 191
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 3 cut(s) 27, 112, 297
BtgZI GCGATG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 167
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 110
CseI GACGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 47, 190
CspCI CAANNNNNGTGG 4 cut(s) 229, 250, 264, 285
CviAII CATG 2 cut(s) 66, 285
CviJI RGCY 6 cut(s) 27, 53, 112, 282, 297, 306
CviKI_1 RGCY 6 cut(s) 27, 53, 112, 282, 297, 306
CviQI GTAC 2 cut(s) 47, 190
EaeI YGGCCR 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 110
FaeI CATG 2 cut(s) 69, 288
FaiI YATR 4 cut(s) 67, 286, 294, 309
FatI CATG 2 cut(s) 65, 284
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 6 cut(s) 103, 121, 124, 205, 259, 304
Fsp4HI GCNGC 6 cut(s) 103, 121, 124, 205, 259, 304
GlaI GCGC 1 cut(s) 106
GluI GCNGC 6 cut(s) 103, 121, 124, 205, 259, 304
HaeIII GGCC 3 cut(s) 27, 112, 297
HapII CCGG 1 cut(s) 28
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 69, 288
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HinfI GANTC 2 cut(s) 76, 223
HpaII CCGG 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 81, 196
Hpy99I CGWCG 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 85, 212
HpyCH4V TGCA 3 cut(s) 123, 207, 303
HpyF10VI GCNNNNNNNGC 5 cut(s) 102, 132, 258, 294, 303
Hsp92II CATG 2 cut(s) 69, 288
HspAI GCGC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 41, 93, 311
Lsp1109I GCAGC 4 cut(s) 107, 114, 135, 191
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 68, 142
MfeI CAATTG 1 cut(s) 160
MluCI AATT 3 cut(s) 130, 160, 313
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 1 cut(s) 8
MspI CCGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 160
MwoI GCNNNNNNNGC 5 cut(s) 102, 132, 258, 294, 303
NlaIII CATG 2 cut(s) 69, 288
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 68
NspI RCATGY 1 cut(s) 69
PciI ACATGT 1 cut(s) 65
PfeI GAWTC 2 cut(s) 76, 223
PkrI GCNGC 6 cut(s) 104, 122, 125, 206, 260, 305
PscI ACATGT 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 1 cut(s) 110
PstI CTGCAG 1 cut(s) 125
RsaI GTAC 2 cut(s) 48, 191
RsaNI GTAC 2 cut(s) 47, 190
SatI GCNGC 6 cut(s) 103, 121, 124, 205, 259, 304
Sau96I GGNCC 1 cut(s) 110
ScaI AGTACT 1 cut(s) 191
SetI ASST 2 cut(s) 284, 308
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 121
Sse9I AATT 3 cut(s) 130, 160, 313
SsiI CCGC 3 cut(s) 38, 165, 258
TaaI ACNGT 2 cut(s) 85, 212
TasI AATT 3 cut(s) 130, 160, 313
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 2 cut(s) 76, 223
TscAI CASTG 1 cut(s) 63
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 5 cut(s) 102, 120, 123, 204, 303
Tsp45I GTSAC 1 cut(s) 68
TspGWI ACGGA 2 cut(s) 164, 216
TspRI CASTG 1 cut(s) 63
XceI RCATGY 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.