RchiOBHm_Chr5g0040841

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000301
Physical Location & Seq
Reverse (-)
35463301 .. 35463780
480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31931

Sequence Viewer

Length: 480 bp
ATGAAGCTCAGCATTACTAATTGTTTCCTCATTTCTATTCTCCTCTTTAGTATTTTACTAATGAATATCGAAGCAAAGCCCACTGTACAGGAAGAGAAAGATGATCATCAAGAAGTCGCCATTGATGATTCTCTGAACTCTCCTGACAATGAAACTGAATCAAACTCCTTCTTCCACAGAAATGACCGCTCTCTGAGGCAAAAGATGAGAACACATACGGTGCGGTTGACCTGTAACAAGTTCCCCAGGATATGTTATACTAAGGGAAGCCCAGGACCTCATTGCTGCAAGAAGAAGTGTGTTAATGTTTTAACAGACAAGCTTAATTGTGGGAAATGTGGGAAGAAATGCAAGTACAGTGAGGTTTGCTGCAAAGGGAAATGTGTGAATCCATCTTTCAACCGGACTCATTGTGGTGGATGTAACAATAGGTGCAAAGATGGAGGGTTTTGTGCATTCGGCATATGCAATTATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

159

Amino Acids

17.9

Weight (kDa)

8.9

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 77 - 159 1.6e-29 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 2 cut(s) 187, 223
AfaI GTAC 2 cut(s) 87, 356
AgsI TTSAA 1 cut(s) 400
AjnI CCWGG 2 cut(s) 245, 271
AluBI AGCT 2 cut(s) 7, 322
AluI AGCT 2 cut(s) 7, 322
ApeKI GCWGC 2 cut(s) 285, 369
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BbvI GCAGC 2 cut(s) 272, 356
BccI CCATC 2 cut(s) 400, 434
BciT130I CCWGG 2 cut(s) 247, 273
BclI TGATCA 1 cut(s) 103
BisI GCNGC 2 cut(s) 286, 370
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 2 cut(s) 287, 371
Bme1390I CCNGG 2 cut(s) 247, 273
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 2 cut(s) 247, 273
Bpu1102I GCTNAGC 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 245, 271
BsaWI WCCGGW 1 cut(s) 402
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 247, 273
BseDI CCNNGG 2 cut(s) 245, 271
BseGI GGATG 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 105
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 22, 185
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 272, 356
BsiSI CCGG 1 cut(s) 403
BsmI GAATGC 1 cut(s) 455
Bsp1407I TGTACA 1 cut(s) 85
Bsp143I GATC 1 cut(s) 103
Bsp1720I GCTNAGC 1 cut(s) 8
BspACI CCGC 2 cut(s) 187, 223
BspCNI CTCAG 2 cut(s) 21, 186
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 245, 271
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 247, 273
Bst4CI ACNGT 3 cut(s) 85, 220, 359
Bst6I CTCTTC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 8, 194, 261
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 247, 273
BstSCI CCNGG 2 cut(s) 245, 271
BstV1I GCAGC 2 cut(s) 272, 356
BtsCI GGATG 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 81, 364
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 86, 355
CviJI RGCY 4 cut(s) 7, 79, 270, 322
CviKI_1 RGCY 4 cut(s) 7, 79, 270, 322
CviQI GTAC 2 cut(s) 86, 355
DdeI CTNAG 3 cut(s) 8, 194, 261
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 245, 271
EcoT22I ATGCAT 1 cut(s) 478
FaiI YATR 7 cut(s) 216, 253, 258, 464, 466, 474, 478
FauNDI CATATG 1 cut(s) 464
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 286, 370
FokI GGATG 1 cut(s) 432
Fsp4HI GCNGC 2 cut(s) 286, 370
GluI GCNGC 2 cut(s) 286, 370
HapII CCGG 1 cut(s) 403
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 4 cut(s) 128, 158, 388, 406
HpaII CCGG 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 135, 195
Hpy188III TCNNGA 2 cut(s) 110, 143
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 85, 220, 359
HpyCH4V TGCA 7 cut(s) 288, 351, 372, 435, 455, 468, 476
HpyF3I CTNAG 3 cut(s) 8, 194, 261
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 8 cut(s) 74, 156, 232, 244, 258, 259, 285, 416
Lsp1109I GCAGC 2 cut(s) 272, 356
MaeIII GTNAC 2 cut(s) 233, 422
MalI GATC 1 cut(s) 105
MbiI CCGCTC 1 cut(s) 189
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 104, 163, 304, 355
MluCI AATT 3 cut(s) 19, 325, 469
MlyI GAGTC 1 cut(s) 400
MnlI CCTC 6 cut(s) 38, 53, 189, 288, 355, 437
Mph1103I ATGCAT 1 cut(s) 478
MseI TTAA 3 cut(s) 303, 311, 324
MslI CAYNNNNRTG 2 cut(s) 180, 414
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 2 cut(s) 247, 273
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 2 cut(s) 247, 273
NdeI CATATG 1 cut(s) 464
NdeII GATC 1 cut(s) 103
NsiI ATGCAT 1 cut(s) 478
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 3 cut(s) 128, 158, 388
PkrI GCNGC 2 cut(s) 287, 371
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 245, 271
PspGI CCWGG 2 cut(s) 245, 271
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
RsaI GTAC 2 cut(s) 87, 356
RsaNI GTAC 2 cut(s) 86, 355
RseI CAYNNNNRTG 2 cut(s) 180, 414
SaqAI TTAA 3 cut(s) 303, 311, 324
SatI GCNGC 2 cut(s) 286, 370
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 400
ScrFI CCNGG 2 cut(s) 247, 273
SetI ASST 6 cut(s) 9, 233, 280, 324, 366, 434
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 180, 414
Sse9I AATT 3 cut(s) 19, 325, 469
SsiI CCGC 2 cut(s) 187, 223
StyD4I CCNGG 2 cut(s) 245, 271
TaaI ACNGT 3 cut(s) 85, 220, 359
TaqI TCGA 1 cut(s) 69
TasI AATT 3 cut(s) 19, 325, 469
TatI WGTACW 2 cut(s) 85, 354
TfiI GAWTC 3 cut(s) 128, 158, 388
Tru1I TTAA 3 cut(s) 303, 311, 324
Tru9I TTAA 3 cut(s) 303, 311, 324
TscAI CASTG 2 cut(s) 88, 364
TseI GCWGC 2 cut(s) 285, 369
TspDTI ATGAA 3 cut(s) 17, 77, 165
TspRI CASTG 2 cut(s) 88, 364
VpaK11BI GGWCC 1 cut(s) 275
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.