RLG00000031032

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000301
Physical Location & Seq
Forward (+)
1484646 .. 1485301
656 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031032

Sequence Viewer

Length: 621 bp
ATGAAGTTTCTCCACATCTTTGCACTCCTAGCAACAATGGCTGTTGTTTCAGCTGCATTTGATCTGGAAGATTACAATGAAGAACCGGAAGTGCAGAGTAATGAATCAACGGTGACTAAATCTGAAATGCAAGAAGCGACTACTTCTTTGAGAGGAGTGAGCCGCTTTCTGACTTCCCAGCAGAACCTGTTAGGAAACTTGACCTGCAACAAGTTTCCTAGGGTTTGTCGTCTGAAGAAGAGCCCAGGGCCCGACTGCTGCAAGAAGAAGTGTGTCAATGTGAAGACGGATAAATTGAACTGCGGGTTCTGCGGGCGCAAGTGCAAGCAAACTGAGATTTGTTGCAAGGGGACGTGCGTCAATGTGAAGACGGATAAATTGAACTGCGGGGTCTGCGGTTACAAATGCAAGTACCCTGAGATTTGTTGCAAGGGAAAGTGCGTCAATGTGAAGACGAATAAATTAAACTGCGGGATCTGCGGTTACAAGTGCAAGTACCCTGAGATTTGTTGCAAGGGGAAGTGCGTCAATCCAACTTGTGACAAAAAGAATTGCGGTGGATGCAACAAGAAGTGCAAGAGAGGGGAGTTATGTGTTTATGGGATGTGCAATTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

207

Amino Acids

22.79

Weight (kDa)

9.01

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 68 - 142 1.9e-20 Stigma-specific STIG1-like protein family
Stig1 PF04885 140 - 206 3.1e-21 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
AciI CCGC 8 cut(s) 163, 303, 312, 387, 396, 471, 480, 555
AclWI GGATC 1 cut(s) 482
AcuI CTGAAG 1 cut(s) 254
AfaI GTAC 2 cut(s) 413, 497
AgsI TTSAA 2 cut(s) 298, 382
AjiI CACGTC 1 cut(s) 354
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 187
AoxI GGCC 1 cut(s) 248
ApaI GGGCCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 53, 258
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspA2I CCTAGG 1 cut(s) 218
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 248, 249
AsuHPI GGTGA 1 cut(s) 124
AvrII CCTAGG 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 252
BanII GRGCYC 2 cut(s) 245, 252
BbsI GAAGAC 3 cut(s) 290, 374, 458
BbvI GCAGC 2 cut(s) 40, 245
BciT130I CCWGG 1 cut(s) 246
BfaI CTAG 2 cut(s) 29, 219
BfuAI ACCTGC 1 cut(s) 212
BisI GCNGC 3 cut(s) 54, 163, 259
BlnI CCTAGG 1 cut(s) 218
BlsI GCNGC 3 cut(s) 55, 164, 260
Bme1390I CCNGG 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 2 cut(s) 248, 249
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 356
BpiI GAAGAC 3 cut(s) 290, 374, 458
BsaJI CCNNGG 3 cut(s) 218, 244, 245
BsaWI WCCGGW 1 cut(s) 85
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 3 cut(s) 218, 244, 245
BseGI GGATG 2 cut(s) 566, 609
BseMII CTCAG 3 cut(s) 324, 408, 492
BseRI GAGGAG 1 cut(s) 168
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 2 cut(s) 40, 245
BseYI CCCAGC 1 cut(s) 177
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 250
Bsp120I GGGCCC 1 cut(s) 248
Bsp1286I GDGCHC 2 cut(s) 245, 252
Bsp143I GATC 2 cut(s) 61, 474
BspACI CCGC 8 cut(s) 163, 303, 312, 387, 396, 471, 480, 555
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 3 cut(s) 325, 409, 493
BspLI GGNNCC 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 1 cut(s) 482
BspQI GCTCTTC 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 218, 244, 245
BssMI GATC 2 cut(s) 61, 474
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 314, 326
BstDEI CTNAG 3 cut(s) 333, 417, 501
BstF5I GGATG 2 cut(s) 566, 609
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 2 cut(s) 64, 477
BstMBI GATC 2 cut(s) 61, 474
BstMWI GCNNNNNNNGC 6 cut(s) 29, 38, 309, 393, 477, 561
BstNI CCWGG 1 cut(s) 246
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 40, 245
BstV2I GAAGAC 3 cut(s) 290, 374, 458
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
BsuRI GGCC 1 cut(s) 250
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 2 cut(s) 566, 609
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 314, 326
CaiI CAGNNNCTG 1 cut(s) 187
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 248, 249
CseI GACGC 3 cut(s) 346, 430, 514
Csp6I GTAC 2 cut(s) 412, 496
CviAII CATG 1 cut(s) 618
CviJI RGCY 5 cut(s) 41, 53, 162, 243, 250
CviKI_1 RGCY 5 cut(s) 41, 53, 162, 243, 250
CviQI GTAC 2 cut(s) 412, 496
DdeI CTNAG 3 cut(s) 333, 417, 501
DpnI GATC 2 cut(s) 63, 476
DpnII GATC 2 cut(s) 61, 474
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 245, 252
Eco57I CTGAAG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 2 cut(s) 245, 252
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 1 cut(s) 621
FaiI YATR 4 cut(s) 592, 600, 615, 619
FaqI GGGAC 1 cut(s) 364
FatI CATG 1 cut(s) 617
FauI CCCGC 4 cut(s) 296, 305, 380, 464
Fnu4HI GCNGC 3 cut(s) 54, 163, 259
FokI GGATG 2 cut(s) 573, 616
FriOI GRGCYC 2 cut(s) 245, 252
Fsp4HI GCNGC 3 cut(s) 54, 163, 259
FspBI CTAG 2 cut(s) 29, 219
GlaI GCGC 1 cut(s) 317
GluI GCNGC 3 cut(s) 54, 163, 259
GsaI CCCAGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 250
HapII CCGG 1 cut(s) 86
HgaI GACGC 3 cut(s) 346, 430, 514
HhaI GCGC 1 cut(s) 318
Hin1II CATG 1 cut(s) 621
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 124, 171, 234
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 38, 309, 393, 477, 561
HpyF3I CTNAG 3 cut(s) 333, 417, 501
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 1 cut(s) 621
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 2 cut(s) 61, 474
LguI GCTCTTC 1 cut(s) 233
LpnPI CCDG 9 cut(s) 50, 99, 191, 200, 217, 231, 258, 429, 513
Lsp1109I GCAGC 2 cut(s) 40, 245
LweI GCATC 1 cut(s) 551
MaeI CTAG 2 cut(s) 29, 219
MaeII ACGT 1 cut(s) 353
MaeIII GTNAC 4 cut(s) 112, 398, 482, 539
MalI GATC 2 cut(s) 63, 476
MboI GATC 2 cut(s) 61, 474
MboII GAAGA 8 cut(s) 80, 92, 247, 250, 277, 295, 379, 463
MflI RGATCY 1 cut(s) 474
MhlI GDGCHC 2 cut(s) 245, 252
MluCI AATT 5 cut(s) 293, 377, 461, 550, 610
MmeI TCCRAC 1 cut(s) 557
MnlI CCTC 2 cut(s) 146, 575
Mph1103I ATGCAT 1 cut(s) 619
MseI TTAA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 6 cut(s) 29, 38, 309, 393, 477, 561
NdeII GATC 2 cut(s) 61, 474
NlaIII CATG 1 cut(s) 621
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 112, 539
NsiI ATGCAT 1 cut(s) 619
PasI CCCWGGG 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 55, 164, 260
PshAI GACNNNNGTC 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 250
PspOMI GGGCCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 248, 249
PstNI CAGNNNCTG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 474
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 413, 497
RsaNI GTAC 2 cut(s) 412, 496
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 3 cut(s) 54, 163, 259
Sau3AI GATC 2 cut(s) 61, 474
Sau96I GGNCC 2 cut(s) 248, 249
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 2 cut(s) 245, 252
SetI ASST 4 cut(s) 55, 189, 206, 356
SfaNI GCATC 1 cut(s) 551
Sse9I AATT 5 cut(s) 293, 377, 461, 550, 610
SsiI CCGC 8 cut(s) 163, 303, 312, 387, 396, 471, 480, 555
SspMI CTAG 2 cut(s) 29, 219
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 356
TasI AATT 5 cut(s) 293, 377, 461, 550, 610
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TseFI GTSAC 2 cut(s) 112, 539
TseI GCWGC 2 cut(s) 53, 258
Tsp45I GTSAC 2 cut(s) 112, 539
TspDTI ATGAA 3 cut(s) 17, 93, 117
TspGWI ACGGA 2 cut(s) 302, 386
XmaJI CCTAGG 1 cut(s) 218
XspI CTAG 2 cut(s) 29, 219
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.