Prupe.4G017000_v2.0.a1

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000301
Physical Location & Seq
Forward (+)
805096 .. 805848
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G017000.1

Sequence Viewer

Length: 456 bp
ATGAAATCCTTCATGCTTTTCCTAATGCTTGCCATGCTAATGGCTTCAGCCATCACTACTCTTTCTGCGATACCTGACGAAGAAGAATCATTCTTCAACGAGGAAAACAATAATGATGCAAATGACGAAACCAAAAGCCAGTTGGAAAAAAGTACTTCTCTGAGGGGAAGAAGCCGCTTCCTTGCCTCCCGGCCTCCTGCAATGACTTGCGACAGATACCCTAAGGTTTGTCGGGCTTCGGGCAGCGCAGGGCCAGATTGCTGCAAGAAGAAATGTGTGGACAGGAACACAGACAGAGCAAACTGTGGCAAGTGTGGGAGGAAATGCAAGTACGCAGAGATATGCTGCAAAGGTAAGTGCGTGAATCCGAGGTCGGACAAGAAAAACTGCGGCAGCTGCAACAACAAGTGCAAGAAAGGCAGCTCATGTGCGTATGGGATGTGCAGCTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

152

Amino Acids

16.62

Weight (kDa)

9.01

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 175, 390
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 2 cut(s) 154, 332
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 3 cut(s) 396, 423, 447
AluI AGCT 3 cut(s) 396, 423, 447
AoxI GGCC 2 cut(s) 191, 251
ApeKI GCWGC 7 cut(s) 243, 261, 345, 393, 396, 420, 444
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 190
AxyI CCTNAGG 1 cut(s) 222
BbvI GCAGC 6 cut(s) 248, 255, 332, 383, 405, 432
BccI CCATC 1 cut(s) 59
BcnI CCSGG 1 cut(s) 190
BisI GCNGC 9 cut(s) 175, 244, 262, 346, 391, 394, 397, 421, 445
BlsI GCNGC 9 cut(s) 176, 245, 263, 347, 392, 395, 398, 422, 446
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 444
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 6 cut(s) 248, 255, 332, 383, 405, 432
BshFI GGCC 2 cut(s) 193, 253
BsiSI CCGG 1 cut(s) 190
BsnI GGCC 2 cut(s) 193, 253
BspACI CCGC 2 cut(s) 175, 390
BspANI GGCC 2 cut(s) 193, 253
BspCNI CTCAG 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 161, 222
BstF5I GGATG 1 cut(s) 444
BstHHI GCGC 1 cut(s) 248
BstMWI GCNNNNNNNGC 3 cut(s) 34, 396, 417
BstSCI CCNGG 1 cut(s) 188
BstV1I GCAGC 6 cut(s) 248, 255, 332, 383, 405, 432
BstXI CCANNNNNNTGG 1 cut(s) 40
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 2 cut(s) 193, 253
BtsCI GGATG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 153, 331
CviAII CATG 4 cut(s) 13, 34, 426, 453
CviQI GTAC 2 cut(s) 153, 331
DdeI CTNAG 2 cut(s) 161, 222
Eco57I CTGAAG 1 cut(s) 30
Eco81I CCTNAGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 454
FaeI CATG 4 cut(s) 16, 37, 429, 456
FaiI YATR 7 cut(s) 14, 35, 343, 427, 435, 450, 454
FatI CATG 4 cut(s) 12, 33, 425, 452
Fnu4HI GCNGC 9 cut(s) 175, 244, 262, 346, 391, 394, 397, 421, 445
FokI GGATG 1 cut(s) 451
Fsp4HI GCNGC 9 cut(s) 175, 244, 262, 346, 391, 394, 397, 421, 445
GlaI GCGC 1 cut(s) 247
GluI GCNGC 9 cut(s) 175, 244, 262, 346, 391, 394, 397, 421, 445
HaeIII GGCC 2 cut(s) 193, 253
HapII CCGG 1 cut(s) 190
HhaI GCGC 1 cut(s) 248
Hin1II CATG 4 cut(s) 16, 37, 429, 456
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 86, 364
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 3 cut(s) 162, 369, 376
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 9 cut(s) 119, 200, 264, 327, 348, 399, 411, 444, 452
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 396, 417
HpyF3I CTNAG 2 cut(s) 161, 222
Hsp92II CATG 4 cut(s) 16, 37, 429, 456
HspAI GCGC 1 cut(s) 246
LpnPI CCDG 7 cut(s) 87, 152, 203, 210, 234, 267, 268
Lsp1109I GCAGC 6 cut(s) 248, 255, 332, 383, 405, 432
LweI GCATC 1 cut(s) 106
MboII GAAGA 5 cut(s) 85, 92, 95, 180, 280
MmeI TCCRAC 2 cut(s) 123, 354
MnlI CCTC 6 cut(s) 94, 156, 196, 204, 312, 363
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 34, 396, 417
NciI CCSGG 1 cut(s) 190
NlaIII CATG 4 cut(s) 16, 37, 429, 456
NsiI ATGCAT 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 86, 364
PkrI GCNGC 9 cut(s) 176, 245, 263, 347, 392, 395, 398, 422, 446
PspPI GGNCC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 396
RsaI GTAC 2 cut(s) 154, 332
RsaNI GTAC 2 cut(s) 153, 331
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 9 cut(s) 175, 244, 262, 346, 391, 394, 397, 421, 445
Sau96I GGNCC 1 cut(s) 251
ScaI AGTACT 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 190
SetI ASST 7 cut(s) 76, 228, 355, 374, 398, 425, 449
SfaNI GCATC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 38
SsiI CCGC 2 cut(s) 175, 390
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 305
TatI WGTACW 1 cut(s) 152
TauI GCSGC 2 cut(s) 177, 393
TfiI GAWTC 2 cut(s) 86, 364
TseI GCWGC 7 cut(s) 243, 261, 345, 393, 396, 420, 444
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.