Prupe.4G017200_v2.0.a1

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000301
Physical Location & Seq
Forward (+)
809253 .. 809935
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G017200.1

Sequence Viewer

Length: 486 bp
ATGAAATCGCTCAAGTTTTTCTTTGTGCTAGCGTTTCTGGTTGCTCTATCAGCTGTCCATACTCTCTCAGCAGCATCATACGAATTCGAAGAATCATTCTTCAACGATGTCGTCGAGGAAGACAACAATAATGTTACAAATGAAACCTTTGACGACCTCCCAGTTATGGCCGCACAAGGACAAGAAAAAACTTCTCTTAGGGGAAGAAGCCGCTTTCTTGCTTCTCATTGGGCCATGGCTGCGACATGCGACAAAAACCCTAAGGTGTGTAAAGCCACGCATGCACATTGCTGCCACAACAAATGTGTTGATTTGAAGACAGACAAACTCAACTGTGGAAAGTGTGGGGTGAAAAGCCATCACGCACAGATATGTTGCAAAGGTCATCTTGTGAACCCAATGTCTGACAAGACACACTGTGGAGGCTGCGACAACCATTGCAAGAAAGGCGGTTCATGTGCGTTTGGGATGTGCAGCTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

162

Amino Acids

17.63

Weight (kDa)

7.92

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 171, 211, 450
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 2 cut(s) 103, 316
AluBI AGCT 2 cut(s) 53, 477
AluI AGCT 2 cut(s) 53, 477
AoxI GGCC 2 cut(s) 168, 231
ApeKI GCWGC 5 cut(s) 71, 239, 291, 426, 474
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 1 cut(s) 87
AsuNHI GCTAGC 1 cut(s) 28
AxyI CCTNAGG 1 cut(s) 261
BbsI GAAGAC 2 cut(s) 126, 323
BbvI GCAGC 4 cut(s) 83, 226, 278, 413
BccI CCATC 1 cut(s) 366
BfaI CTAG 1 cut(s) 29
BisI GCNGC 7 cut(s) 72, 171, 211, 240, 292, 427, 475
BlsI GCNGC 7 cut(s) 73, 172, 212, 241, 293, 428, 476
BmgT120I GGNCC 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 83
BmtI GCTAGC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 155
BpiI GAAGAC 2 cut(s) 126, 323
Bpu14I TTCGAA 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 161
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 2 cut(s) 286, 436
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 2 cut(s) 286, 436
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 4 cut(s) 83, 226, 278, 413
BshFI GGCC 2 cut(s) 170, 233
BslI CCNNNNNNNGG 1 cut(s) 166
BsnI GGCC 2 cut(s) 170, 233
Bsp119I TTCGAA 1 cut(s) 87
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 171, 211, 450
BspANI GGCC 2 cut(s) 170, 233
BspCNI CTCAG 1 cut(s) 80
BspOI GCTAGC 1 cut(s) 32
BspT104I TTCGAA 1 cut(s) 87
BsrDI GCAATG 2 cut(s) 286, 436
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 335, 419
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 30, 282
BstDEI CTNAG 4 cut(s) 67, 197, 261, 483
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 474
BstMWI GCNNNNNNNGC 4 cut(s) 50, 239, 281, 447
BstNSI RCATGY 2 cut(s) 249, 284
BstV1I GCAGC 4 cut(s) 83, 226, 278, 413
BstV2I GAAGAC 2 cut(s) 126, 323
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 2 cut(s) 170, 233
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 1 cut(s) 474
BtsIMutI CAGTG 1 cut(s) 415
Cac8I GCNNGC 2 cut(s) 30, 282
Cfr13I GGNCC 1 cut(s) 231
CviAII CATG 4 cut(s) 235, 246, 281, 456
CviJI RGCY 9 cut(s) 53, 170, 210, 233, 239, 275, 357, 426, 477
CviKI_1 RGCY 9 cut(s) 53, 170, 210, 233, 239, 275, 357, 426, 477
DdeI CTNAG 4 cut(s) 67, 197, 261, 483
DraIII CACNNNGTG 1 cut(s) 419
EaeI YGGCCR 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 4 cut(s) 238, 249, 284, 459
FaiI YATR 9 cut(s) 60, 79, 167, 236, 247, 282, 373, 457, 480
FalI AAGNNNNNCTT 3 cut(s) 37, 372, 404
FatI CATG 4 cut(s) 234, 245, 280, 455
Fnu4HI GCNGC 7 cut(s) 72, 171, 211, 240, 292, 427, 475
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 7 cut(s) 72, 171, 211, 240, 292, 427, 475
FspBI CTAG 1 cut(s) 29
GluI GCNGC 7 cut(s) 72, 171, 211, 240, 292, 427, 475
HaeIII GGCC 2 cut(s) 170, 233
Hin1II CATG 4 cut(s) 238, 249, 284, 459
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 335, 419
HpyCH4V TGCA 4 cut(s) 284, 378, 441, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 239, 281, 447
HpyF3I CTNAG 4 cut(s) 67, 197, 261, 483
Hsp92II CATG 4 cut(s) 238, 249, 284, 459
LpnPI CCDG 2 cut(s) 23, 174
Lsp1109I GCAGC 4 cut(s) 83, 226, 278, 413
LweI GCATC 1 cut(s) 83
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 5 cut(s) 91, 101, 131, 216, 328
MluCI AATT 1 cut(s) 83
MnlI CCTC 3 cut(s) 109, 167, 416
MslI CAYNNNNRTG 1 cut(s) 370
MspA1I CMGCKG 1 cut(s) 53
MwoI GCNNNNNNNGC 4 cut(s) 50, 239, 281, 447
NcoI CCATGG 1 cut(s) 234
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 238, 249, 284, 459
NspI RCATGY 2 cut(s) 249, 284
NspV TTCGAA 1 cut(s) 87
PaeI GCATGC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 7 cut(s) 73, 172, 212, 241, 293, 428, 476
PspPI GGNCC 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 370
SatI GCNGC 7 cut(s) 72, 171, 211, 240, 292, 427, 475
Sau96I GGNCC 1 cut(s) 231
SetI ASST 6 cut(s) 55, 149, 159, 267, 385, 479
SfaNI GCATC 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 370
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 1 cut(s) 284
Sse9I AATT 1 cut(s) 83
SsiI CCGC 3 cut(s) 171, 211, 450
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 2 cut(s) 335, 419
TaqI TCGA 2 cut(s) 87, 114
TasI AATT 1 cut(s) 83
TauI GCSGC 2 cut(s) 173, 213
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 422
TseI GCWGC 5 cut(s) 71, 239, 291, 426, 474
TspDTI ATGAA 3 cut(s) 17, 156, 444
TspRI CASTG 1 cut(s) 422
XapI RAATTY 1 cut(s) 83
XceI RCATGY 2 cut(s) 249, 284
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.