Prupe.4G020300_v2.0.a1

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000301
Physical Location & Seq
Reverse (-)
951850 .. 952260
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G020300.1

Sequence Viewer

Length: 411 bp
ATGCTAATAGCTTCAGCCATCACTACTCTCTCTGCAATACCAGACGAAGAAGAATCATTTTTCAACGAGGAAAACAATACTTATGCAAATGACGAAACCAAAAACCAGTTTGGAAAAAGCACTTCTCTAAGAAGCCGCTTCCTTGCCTCCCGGCCGACTGCCATGACTTGCGACAAAAACCCTAAGGTTTGTCAGGCGTCGGGCAGCGCAGGGCCGGATTGCTGCAACAAGAAATGCGTGGACAGAAACACAGACACAGCGAACTGCGGCAGGTGTGGGAGGAAATGCAATTACGCAGAGATTTGCTGCGAAGGTAACTGTGTGAATCCGATGTCGGACAAGGAAAACTGCGGCAGCTGCAACAACACGTGCACGAAAAGAAAGGAATGTGCAGCTATGCATGAACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

137

Amino Acids

14.86

Weight (kDa)

6.12

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 261
AciI CCGC 3 cut(s) 136, 267, 351
AcoI YGGCCR 1 cut(s) 152
AcvI CACGTG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 197
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 3 cut(s) 11, 357, 395
AluI AGCT 3 cut(s) 11, 357, 395
Alw21I GWGCWC 1 cut(s) 374
Alw44I GTGCAC 1 cut(s) 370
AoxI GGCC 2 cut(s) 152, 212
ApaLI GTGCAC 1 cut(s) 370
ApeKI GCWGC 6 cut(s) 204, 222, 306, 354, 357, 392
AspLEI GCGC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 374
BbrPI CACGTG 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 374
BbvI GCAGC 6 cut(s) 209, 216, 293, 344, 366, 404
BccI CCATC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 261
BisI GCNGC 9 cut(s) 136, 205, 223, 268, 307, 352, 355, 358, 393
BlsI GCNGC 9 cut(s) 137, 206, 224, 269, 308, 353, 356, 359, 394
Bme1390I CCNGG 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 151
BpuMI CCSGG 1 cut(s) 151
BsaAI YACGTR 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 106
Bse21I CCTNAGG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 374
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 6 cut(s) 209, 216, 293, 344, 366, 404
BsgI GTGCAG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 2 cut(s) 154, 214
BsiEI CGRYCG 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 374
BsiSI CCGG 2 cut(s) 151, 215
BsnI GGCC 2 cut(s) 154, 214
Bsp1286I GDGCHC 1 cut(s) 374
BspACI CCGC 3 cut(s) 136, 267, 351
BspANI GGCC 2 cut(s) 154, 214
BspMI ACCTGC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 320
BstACI GRCGYC 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 128, 183
BstHHI GCGC 1 cut(s) 209
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstSCI CCNGG 1 cut(s) 149
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 6 cut(s) 209, 216, 293, 344, 366, 404
BstZI CGGCCG 1 cut(s) 152
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 2 cut(s) 154, 214
BveI ACCTGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 212
CseI GACGC 1 cut(s) 186
CviAII CATG 2 cut(s) 163, 401
CviJI RGCY 7 cut(s) 11, 17, 135, 154, 214, 357, 395
CviKI_1 RGCY 7 cut(s) 11, 17, 135, 154, 214, 357, 395
DdeI CTNAG 2 cut(s) 128, 183
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
EclXI CGGCCG 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 152
Eco72I CACGTG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 402
FaeI CATG 2 cut(s) 166, 404
FaiI YATR 4 cut(s) 84, 164, 398, 402
FatI CATG 2 cut(s) 162, 400
Fnu4HI GCNGC 9 cut(s) 136, 205, 223, 268, 307, 352, 355, 358, 393
Fsp4HI GCNGC 9 cut(s) 136, 205, 223, 268, 307, 352, 355, 358, 393
GlaI GCGC 1 cut(s) 208
GluI GCNGC 9 cut(s) 136, 205, 223, 268, 307, 352, 355, 358, 393
HaeIII GGCC 2 cut(s) 154, 214
HapII CCGG 2 cut(s) 151, 215
HgaI GACGC 1 cut(s) 186
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 2 cut(s) 166, 404
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 2 cut(s) 53, 325
HpaII CCGG 2 cut(s) 151, 215
Hpy166II GTNNAC 2 cut(s) 241, 372
Hpy188I TCNGA 2 cut(s) 330, 337
Hpy8I GTNNAC 2 cut(s) 241, 372
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 8 cut(s) 35, 86, 225, 288, 360, 372, 392, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 128, 183
HpySE526I ACGT 1 cut(s) 368
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 166, 404
HspAI GCGC 1 cut(s) 207
LpnPI CCDG 7 cut(s) 54, 119, 164, 179, 195, 228, 256
Lsp1109I GCAGC 6 cut(s) 209, 216, 293, 344, 366, 404
MaeII ACGT 1 cut(s) 368
MaeIII GTNAC 1 cut(s) 314
MboII GAAGA 2 cut(s) 59, 62
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 3 cut(s) 61, 157, 273
Mph1103I ATGCAT 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 357
MspI CCGG 2 cut(s) 151, 215
MspR9I CCNGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 151
NlaIII CATG 2 cut(s) 166, 404
NsiI ATGCAT 1 cut(s) 402
PaqCI CACCTGC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 53, 325
PkrI GCNGC 9 cut(s) 137, 206, 224, 269, 308, 353, 356, 359, 394
PmaCI CACGTG 1 cut(s) 369
PmlI CACGTG 1 cut(s) 369
Ppu21I YACGTR 1 cut(s) 369
PspCI CACGTG 1 cut(s) 369
PspPI GGNCC 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 357
SatI GCNGC 9 cut(s) 136, 205, 223, 268, 307, 352, 355, 358, 393
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 151
SduI GDGCHC 1 cut(s) 374
SetI ASST 7 cut(s) 13, 189, 275, 316, 359, 371, 397
Sse9I AATT 1 cut(s) 289
SsiI CCGC 3 cut(s) 136, 267, 351
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 371
TasI AATT 1 cut(s) 289
TauI GCSGC 3 cut(s) 138, 270, 354
TfiI GAWTC 2 cut(s) 53, 325
TseI GCWGC 6 cut(s) 204, 222, 306, 354, 357, 392
VneI GTGCAC 1 cut(s) 370
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.