Prupe.4G218600_v2.0.a1

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000301
Physical Location & Seq
Reverse (-)
13754910 .. 13755368
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G218600.1

Sequence Viewer

Length: 459 bp
ATGAAGCTGATACAGCATTTCTTGATATTTCTTCTCCTCTTGGCTCTTGTTCTAACCAACATTGAAGCAAACCCCAATGCAGAGGAGGAGGAACATGAAACCAATATTAATGATTCTTTGAACTCTCTGGTAAACGAAACTGAAGAACAATCTTCAACCATACATGGAATTGGCCGTTTTCTCTTGAGCAAACGCCGGCGGCGATTGACTTGTAACAAGTTCCCCAGGATATGCCGTGCTAAGGGAAGCCCGGGGCCTTCTTGCTGCAAGAAGAAGTGTGTTAATGTGTTGACAGACCGCCTCAACTGTGGAAGATGTGGAAAGAAGTGTAGGTACAATGAGATATGCTGCAAGGGAAAATGTGTAAATCCATCTTTCAATAAGGGGCATTGTGGTGGCTGCAAAAATAGGTGCAGAGATGGGGGGTTTTGTGCATTTGGCCTATGCAACTATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

153

Amino Acids

17.02

Weight (kDa)

9.13

Isoelectric Point (pI)

55.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 199, 298
AcoI YGGCCR 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 65, 121, 156, 379
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 3 cut(s) 172, 254, 439
ApeKI GCWGC 3 cut(s) 264, 348, 399
AseI ATTAAT 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 2 cut(s) 251, 252
AvaI CYCGRG 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbvI GCAGC 3 cut(s) 251, 335, 386
BccI CCATC 2 cut(s) 379, 413
BceAI ACGGC 2 cut(s) 159, 219
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 2 cut(s) 251, 252
BisI GCNGC 4 cut(s) 200, 265, 349, 400
BlsI GCNGC 4 cut(s) 201, 266, 350, 401
Bme1390I CCNGG 3 cut(s) 226, 251, 252
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 3 cut(s) 226, 251, 252
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 205
BpuMI CCSGG 2 cut(s) 251, 252
BsaJI CCNNGG 3 cut(s) 224, 250, 251
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 195
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 3 cut(s) 224, 250, 251
BseLI CCNNNNNNNGG 1 cut(s) 241
BseRI GAGGAG 3 cut(s) 26, 98, 101
BseXI GCAGC 3 cut(s) 251, 335, 386
BsgI GTGCAG 1 cut(s) 433
BshFI GGCC 3 cut(s) 174, 256, 441
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 2 cut(s) 196, 251
BslI CCNNNNNNNGG 1 cut(s) 241
BsnI GGCC 3 cut(s) 174, 256, 441
BsoBI CYCGRG 1 cut(s) 250
BspACI CCGC 2 cut(s) 199, 298
BspANI GGCC 3 cut(s) 174, 256, 441
BspLI GGNNCC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 195
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 3 cut(s) 224, 250, 251
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 224, 249, 250
BstV1I GCAGC 3 cut(s) 251, 335, 386
BsuRI GGCC 3 cut(s) 174, 256, 441
Cac8I GCNNGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 254
Cfr9I CCCGGG 1 cut(s) 250
Csp6I GTAC 1 cut(s) 334
CviAII CATG 2 cut(s) 95, 164
CviJI RGCY 7 cut(s) 7, 44, 174, 249, 256, 399, 441
CviKI_1 RGCY 7 cut(s) 7, 44, 174, 249, 256, 399, 441
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 457
FaeI CATG 2 cut(s) 98, 167
FaiI YATR 8 cut(s) 96, 161, 165, 232, 346, 445, 453, 457
FatI CATG 2 cut(s) 94, 163
Fnu4HI GCNGC 4 cut(s) 200, 265, 349, 400
Fsp4HI GCNGC 4 cut(s) 200, 265, 349, 400
GluI GCNGC 4 cut(s) 200, 265, 349, 400
HaeIII GGCC 3 cut(s) 174, 256, 441
HapII CCGG 2 cut(s) 196, 251
Hin1II CATG 2 cut(s) 98, 167
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 1 cut(s) 113
HpaII CCGG 2 cut(s) 196, 251
Hpy166II GTNNAC 2 cut(s) 133, 291
Hpy188III TCNNGA 2 cut(s) 22, 184
Hpy8I GTNNAC 2 cut(s) 133, 291
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 8 cut(s) 80, 267, 351, 402, 414, 434, 447, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 2 cut(s) 98, 167
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
LpnPI CCDG 5 cut(s) 113, 209, 211, 238, 264
Lsp1109I GCAGC 3 cut(s) 251, 335, 386
MaeIII GTNAC 1 cut(s) 212
MboII GAAGA 5 cut(s) 23, 144, 155, 283, 324
MluCI AATT 1 cut(s) 168
MnlI CCTC 5 cut(s) 47, 76, 79, 82, 311
Mph1103I ATGCAT 1 cut(s) 457
MreI CGCCGGCG 1 cut(s) 195
MroNI GCCGGC 1 cut(s) 195
MseI TTAA 2 cut(s) 108, 282
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 2 cut(s) 196, 251
MspR9I CCNGG 3 cut(s) 226, 251, 252
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 13
NaeI GCCGGC 1 cut(s) 197
NciI CCSGG 2 cut(s) 251, 252
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 2 cut(s) 98, 167
NlaIV GGNNCC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 4 cut(s) 201, 266, 350, 401
PshBI ATTAAT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 254
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 2 cut(s) 108, 282
SatI GCNGC 4 cut(s) 200, 265, 349, 400
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 3 cut(s) 226, 251, 252
SetI ASST 3 cut(s) 9, 335, 413
SgrAI CRCCGGYG 1 cut(s) 195
SmaI CCCGGG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 168
SsiI CCGC 2 cut(s) 199, 298
SspI AATATT 1 cut(s) 106
StyD4I CCNGG 3 cut(s) 224, 249, 250
TaaI ACNGT 1 cut(s) 308
TasI AATT 1 cut(s) 168
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 108, 282
Tru9I TTAA 2 cut(s) 108, 282
TseI GCWGC 3 cut(s) 264, 348, 399
TspDTI ATGAA 2 cut(s) 17, 111
TspMI CCCGGG 1 cut(s) 250
VspI ATTAAT 1 cut(s) 108
XmaI CCCGGG 1 cut(s) 250
Zsp2I ATGCAT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.