Rmu_sc0000131.1_g000011

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000131.1
OG0000301
Physical Location & Seq
Forward (+)
33767 .. 34198
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000131.1_g000011.1.cds

Sequence Viewer

Length: 432 bp
atgttgatggcttttgccgttactctctctgcaacactagtcgaagaagaactattttccaacaaggaaaccaaggctgcaaatgatcacgaaacctttgatgccaaaagccaagggaaaacctctttgaggggaacaagcagcgtcttccttggttctagggaagtgacgacatcatcatgcgacaaaaaccctaaggtttgtagagccgccgcaaacagcccaaaatcacattgctgctacaacaagtgtgtggacgtgaagacggacagactcaactgcgggaaatgtggggtgaaatgcaagcacgcagagatatgctgcaacggtcatgttgtgcacacaatgtccgacaagaaacactgcgggagctgcgacaaccattgcaagagagatggttcttgtgcgtttgggatgtgcagctatgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

143

Amino Acids

15.46

Weight (kDa)

8.49

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 210, 213, 282, 366
AfiI CCNNNNNNNGG 1 cut(s) 129
AhlI ACTAGT 1 cut(s) 37
AjiI CACGTC 1 cut(s) 259
AluBI AGCT 2 cut(s) 372, 423
AluI AGCT 2 cut(s) 372, 423
Alw21I GWGCWC 1 cut(s) 342
Alw44I GTGCAC 1 cut(s) 338
ApaLI GTGCAC 1 cut(s) 338
ApeKI GCWGC 6 cut(s) 77, 141, 237, 321, 372, 420
AsuHPI GGTGA 1 cut(s) 307
AxyI CCTNAGG 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 139, 269
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 5 cut(s) 64, 153, 224, 308, 359
BccI CCATC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 2
BclI TGATCA 1 cut(s) 85
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 159
BisI GCNGC 8 cut(s) 78, 142, 210, 213, 238, 322, 373, 421
BlsI GCNGC 8 cut(s) 79, 143, 211, 214, 239, 323, 374, 422
BmgBI CACGTC 1 cut(s) 259
BmsI GCATC 1 cut(s) 91
BpiI GAAGAC 2 cut(s) 139, 269
BsaJI CCNNGG 3 cut(s) 72, 112, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 232, 382
BseDI CCNNGG 3 cut(s) 72, 112, 151
BseGI GGATG 1 cut(s) 420
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 2 cut(s) 232, 382
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 5 cut(s) 64, 153, 224, 308, 359
BsiHKAI GWGCWC 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 4 cut(s) 210, 213, 282, 366
BsrDI GCAATG 2 cut(s) 232, 382
BssECI CCNNGG 3 cut(s) 72, 112, 151
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 3 cut(s) 72, 112, 151
Bst4CI ACNGT 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 305, 309
BstDEI CTNAG 2 cut(s) 195, 429
BstENI CCTNNNNNAGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 420
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 342
BstV1I GCAGC 5 cut(s) 64, 153, 224, 308, 359
BstV2I GAAGAC 2 cut(s) 139, 269
Bsu36I CCTNAGG 1 cut(s) 195
BtrI CACGTC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 420
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 305, 309
CseI GACGC 1 cut(s) 133
CviAII CATG 2 cut(s) 180, 332
CviJI RGCY 7 cut(s) 11, 77, 111, 209, 222, 372, 423
CviKI_1 RGCY 7 cut(s) 11, 77, 111, 209, 222, 372, 423
DdeI CTNAG 2 cut(s) 195, 429
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco130I CCWWGG 3 cut(s) 72, 112, 151
Eco81I CCTNAGG 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 127
EcoT14I CCWWGG 3 cut(s) 72, 112, 151
ErhI CCWWGG 3 cut(s) 72, 112, 151
FaeI CATG 2 cut(s) 183, 335
FaiI YATR 4 cut(s) 181, 319, 333, 426
FatI CATG 2 cut(s) 179, 331
FauI CCCGC 2 cut(s) 275, 359
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 8 cut(s) 78, 142, 210, 213, 238, 322, 373, 421
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 8 cut(s) 78, 142, 210, 213, 238, 322, 373, 421
FspBI CTAG 2 cut(s) 38, 159
GluI GCNGC 8 cut(s) 78, 142, 210, 213, 238, 322, 373, 421
HgaI GACGC 1 cut(s) 133
Hin1II CATG 2 cut(s) 183, 335
HinfI GANTC 1 cut(s) 273
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 256, 340
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 256, 340
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 7 cut(s) 32, 80, 303, 324, 340, 387, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 372
HpyF3I CTNAG 2 cut(s) 195, 429
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 2 cut(s) 183, 335
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 369
Lsp1109I GCAGC 5 cut(s) 64, 153, 224, 308, 359
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 38, 159
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 2 cut(s) 19, 166
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 4 cut(s) 56, 59, 139, 274
MhlI GDGCHC 1 cut(s) 342
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 2 cut(s) 84, 375
MnlI CCTC 2 cut(s) 123, 133
MslI CAYNNNNRTG 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 372
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 183, 335
NmuCI GTSAC 1 cut(s) 166
PkrI GCNGC 8 cut(s) 79, 143, 211, 214, 239, 323, 374, 422
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 178
SatI GCNGC 8 cut(s) 78, 142, 210, 213, 238, 322, 373, 421
Sau3AI GATC 1 cut(s) 85
SchI GAGTC 1 cut(s) 267
SduI GDGCHC 1 cut(s) 342
SetI ASST 6 cut(s) 98, 125, 201, 261, 374, 425
SfaNI GCATC 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 178
SpeI ACTAGT 1 cut(s) 37
SsiI CCGC 4 cut(s) 210, 213, 282, 366
SspMI CTAG 2 cut(s) 38, 159
StyI CCWWGG 3 cut(s) 72, 112, 151
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 42
TauI GCSGC 2 cut(s) 212, 215
TscAI CASTG 1 cut(s) 368
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 6 cut(s) 77, 141, 237, 321, 372, 420
Tsp45I GTSAC 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 1 cut(s) 368
VneI GTGCAC 1 cut(s) 338
XagI CCTNNNNNAGG 1 cut(s) 127
XspI CTAG 2 cut(s) 38, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.