Prupe.4G017100_v2.0.a1

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000301
Physical Location & Seq
Forward (+)
806440 .. 808058
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G017100.1

Sequence Viewer

Length: 354 bp
ATGTCACAGAGAATTCAGCTTCAAAGCAATACGGCTCAAGCAATACTTGGAAAAAGCACTTCTCTAAGAAGCCGCTTCCTTGCCTCCCGGCCGCCTGCCATAACTTGCGACAAAAACCCTAAGCTTTGTCAGGTGTATGGCAGCGCAGGGCCGGATTGCTGCAACAAGAAATGTGTGGACAGAAACACAGACACAGCAAACTGCGGCAAGTGTGGGAGGAAATGCAATTACGCAGAGATTTGCTGCGAAGGTAAGTGTGTGAATCCGAACTCGGACAATGAAAACTGCGGCAGCTGCAACAACACGTGCAAGAAAGGCACTTCATGTGCGTTTGGGATGTGCAGCTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

118

Amino Acids

12.53

Weight (kDa)

8.8

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 73, 92, 204, 288
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 1 cut(s) 12
AcvI CACGTG 1 cut(s) 306
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 4 cut(s) 19, 124, 294, 345
AluI AGCT 4 cut(s) 19, 124, 294, 345
AoxI GGCC 2 cut(s) 89, 149
ApeKI GCWGC 6 cut(s) 141, 159, 243, 291, 294, 342
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 88
BbrPI CACGTG 1 cut(s) 306
BbvI GCAGC 5 cut(s) 146, 153, 230, 281, 303
BceAI ACGGC 1 cut(s) 48
BcnI CCSGG 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 21
BpuMI CCSGG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 306
BseGI GGATG 1 cut(s) 342
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 5 cut(s) 146, 153, 230, 281, 303
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 91, 151
BsiEI CGRYCG 1 cut(s) 92
BsiSI CCGG 2 cut(s) 88, 152
BsnI GGCC 2 cut(s) 91, 151
BspACI CCGC 4 cut(s) 73, 92, 204, 288
BspANI GGCC 2 cut(s) 91, 151
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 65, 120
BstF5I GGATG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 146
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 294, 315
BstSCI CCNGG 1 cut(s) 86
BstV1I GCAGC 5 cut(s) 146, 153, 230, 281, 303
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 91, 151
BtsCI GGATG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 149
CviAII CATG 2 cut(s) 324, 351
CviJI RGCY 8 cut(s) 19, 35, 72, 91, 124, 151, 294, 345
CviKI_1 RGCY 8 cut(s) 19, 35, 72, 91, 124, 151, 294, 345
DdeI CTNAG 2 cut(s) 65, 120
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 89
Eco52I CGGCCG 1 cut(s) 89
Eco72I CACGTG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 352
FaeI CATG 2 cut(s) 327, 354
FaiI YATR 5 cut(s) 101, 138, 325, 348, 352
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 2 cut(s) 323, 350
FokI GGATG 1 cut(s) 349
GlaI GCGC 1 cut(s) 145
HaeIII GGCC 2 cut(s) 91, 151
HapII CCGG 2 cut(s) 88, 152
HhaI GCGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 327, 354
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 262
HpaII CCGG 2 cut(s) 88, 152
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 267, 274
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 6 cut(s) 162, 225, 297, 309, 342, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 315
HpyF3I CTNAG 2 cut(s) 65, 120
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 2 cut(s) 327, 354
HspAI GCGC 1 cut(s) 144
LpnPI CCDG 5 cut(s) 101, 108, 116, 132, 165
Lsp1109I GCAGC 5 cut(s) 146, 153, 230, 281, 303
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 3
MluCI AATT 2 cut(s) 12, 226
MnlI CCTC 2 cut(s) 94, 210
Mph1103I ATGCAT 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 2 cut(s) 88, 152
MspR9I CCNGG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 294, 315
NciI CCSGG 1 cut(s) 88
NlaIII CATG 2 cut(s) 327, 354
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 352
PfeI GAWTC 1 cut(s) 262
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 306
PspCI CACGTG 1 cut(s) 306
PspPI GGNCC 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 88
SetI ASST 7 cut(s) 21, 126, 135, 253, 296, 308, 347
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 2 cut(s) 12, 226
SsiI CCGC 4 cut(s) 73, 92, 204, 288
StyD4I CCNGG 1 cut(s) 86
TaiI ACGT 1 cut(s) 308
TasI AATT 2 cut(s) 12, 226
TauI GCSGC 4 cut(s) 75, 94, 207, 291
TfiI GAWTC 1 cut(s) 262
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 6 cut(s) 141, 159, 243, 291, 294, 342
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 294, 312
XapI RAATTY 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.