FvH4_2g01120

Stigma-specific protein, Stig1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000301
Physical Location & Seq
Forward (+)
1059722 .. 1060788
1067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01120.t1

Sequence Viewer

Length: 453 bp
ATGAAAGGCTCCATCCAAGTCTTATTTCTGCTAGCCATGCTAATGGCTTTAGCCGCCATTACTCTTTCTGCATCAGCCCCAGAAGAAGATAGAGAGGAATGGTTTTCTGACGAGGACAATGATCTCCCTGCGACCTTAAGCCAAATGAAAACTTCTCTCAGGGGAGCAAGCCGCTTCCTTGCCACTCGGGCTACCACGACTACCTGTGACAAAAACCCTAAGGTTTGCAAGGCTGCAGGCAGCGTGGGGCGAGATTGCTGCAAGAAGAAGTGCGTGGATTTGAAGACGGACAGAGTTAACTGCGGCAAGTGTGGGAAGAAATGCAAGTACTCGGAGATATGCTGCAAAGGGAAGTGTCTGAAATCAATGTCTGACAAGAAAAACTGTGGGAGCTGCAACAACAAATGCAAGAAAGGAAGCTCGTGTGTGTATGGAATGTGTAGCTATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

151

Amino Acids

16.25

Weight (kDa)

9.06

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 67 - 150 1.6e-28 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 54, 172, 303
AfaI GTAC 1 cut(s) 329
AflII CTTAAG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 3 cut(s) 393, 420, 444
AluI AGCT 3 cut(s) 393, 420, 444
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 5 cut(s) 233, 240, 258, 342, 393
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 219
BauI CACGAG 1 cut(s) 421
BbsI GAAGAC 1 cut(s) 290
BbvI GCAGC 5 cut(s) 220, 245, 252, 329, 380
BccI CCATC 1 cut(s) 20
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 234
BfrI CTTAAG 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 8 cut(s) 54, 172, 234, 241, 259, 304, 343, 394
BlsI GCNGC 8 cut(s) 55, 173, 235, 242, 260, 305, 344, 395
BmcAI AGTACT 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 1 cut(s) 80
BmtI GCTAGC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 290
Bse21I CCTNAGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 172
BseXI GCAGC 5 cut(s) 220, 245, 252, 329, 380
BsiHKCI CYCGRG 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 3 cut(s) 54, 172, 303
BspCNI CTCAG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 238
BspOI GCTAGC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 136
BssMI GATC 1 cut(s) 121
BssSI CACGAG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 33, 169, 238
BstDEI CTNAG 2 cut(s) 158, 219
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 37, 53, 188
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 5 cut(s) 220, 245, 252, 329, 380
BstV2I GAAGAC 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 3 cut(s) 33, 169, 238
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 37
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 158, 219
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco81I CCTNAGG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 186
FaeI CATG 1 cut(s) 40
FaiI YATR 4 cut(s) 38, 340, 432, 447
FatI CATG 1 cut(s) 36
Fnu4HI GCNGC 8 cut(s) 54, 172, 234, 241, 259, 304, 343, 394
Fsp4HI GCNGC 8 cut(s) 54, 172, 234, 241, 259, 304, 343, 394
FspBI CTAG 1 cut(s) 32
GluI GCNGC 8 cut(s) 54, 172, 234, 241, 259, 304, 343, 394
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HpaI GTTAAC 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 4 cut(s) 109, 334, 360, 373
Hpy8I GTNNAC 1 cut(s) 298
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 8 cut(s) 71, 228, 236, 261, 324, 345, 396, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 53, 188
HpyF3I CTNAG 2 cut(s) 158, 219
Hsp92II CATG 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 3 cut(s) 14, 164, 390
LpnPI CCDG 5 cut(s) 93, 141, 145, 217, 222
Lsp1109I GCAGC 5 cut(s) 220, 245, 252, 329, 380
LweI GCATC 1 cut(s) 80
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 5 cut(s) 95, 98, 277, 295, 328
MnlI CCTC 2 cut(s) 88, 106
MseI TTAA 2 cut(s) 137, 297
MslI CAYNNNNRTG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 136
MwoI GCNNNNNNNGC 3 cut(s) 37, 53, 188
NdeII GATC 1 cut(s) 121
NheI GCTAGC 1 cut(s) 31
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 206
PkrI GCNGC 8 cut(s) 55, 173, 235, 242, 260, 305, 344, 395
PspN4I GGNNCC 1 cut(s) 10
PstI CTGCAG 1 cut(s) 238
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 137, 297
SatI GCNGC 8 cut(s) 54, 172, 234, 241, 259, 304, 343, 394
Sau3AI GATC 1 cut(s) 121
ScaI AGTACT 1 cut(s) 329
SetI ASST 6 cut(s) 137, 206, 225, 395, 422, 446
SfaNI GCATC 1 cut(s) 80
SfcI CTRYAG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
SsiI CCGC 3 cut(s) 54, 172, 303
SspMI CTAG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 386
TatI WGTACW 1 cut(s) 327
TauI GCSGC 3 cut(s) 56, 174, 306
Tru1I TTAA 2 cut(s) 137, 297
Tru9I TTAA 2 cut(s) 137, 297
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 5 cut(s) 233, 240, 258, 342, 393
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 17, 161
TspGWI ACGGA 1 cut(s) 302
Vha464I CTTAAG 1 cut(s) 136
XspI CTAG 1 cut(s) 32
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.