FvH4_3g01670

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000301
Physical Location & Seq
Forward (+)
861992 .. 863872
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01670.t1

Sequence Viewer

Length: 858 bp
ATGGCTTTTGCCGCCATTACTCTTTCTGCATCAACTCCAGAAGAAGATAGAGATCAGGAATGGTTTTCTAACGAGGAAAATGATACTCCAAATGAACCATCTGATGATCTTCCTGATACCTTAAGCCAAACGAAAACTTCTCTTAGGGGAGCAAGCCGCTTCCTTGCCACTCGGGCTACCGCGACTACCTGTGACAAAAACCCTAAGGTTTGCAAGGCTGCAGGCAGCGCGGGGCGAGATTGCTGCAAGAAGAAGTGCGTGGATTTGAGGACTGACAGAGTTAACTGCGGCAAGTGTGGGAAGAAATGCAAGTACTCGGAGATATGCTGCAAAGGGAAGTGTCTGAATCCAATGTCTGACAAGAAAAACTGTGGGAGCTGCAACAACAAATGCAAGAAAGTGGTAGCGACATTGATGGCTTTAGCCGTTACTCTCTCTGCAACACTAATAGAAGAAGAACTATTTCTAAATGAGAAAACCAAGGCTACAAAAAATCACGAAACATTAGATGATGAGCTTCTAATGGATGCCAAAAACCAGGAGAAAACCTCCCTGAGGGGAACAAGCAGCATCTTCCTTGGTCCGAGGGCTGTGACGACATCATCATGTGACAAGAACCCTAAGGTTTGTAGAGCCGCCGCATACGGCTCAAGATCACATTGCTGTCACAACAAGTGTGTGGATGTGAAGACGGACACACTCAACTGTGGGAAATGTGGGGTGAAATGCAAGCAAGGAGAGATATGCTGCAACGGCCATGTTGTGCGCACAATGTCCGACAAAAAACACTGCGGGAGATGCGACAACCATTGCAAGAAGGGTGGTTCTTGTGCGTTTGGGATGTGTAGCTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

286

Amino Acids

30.93

Weight (kDa)

8.73

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 62 - 135 1.2e-23 Stigma-specific STIG1-like protein family
Stig1 PF04885 201 - 285 5.5e-24 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 767
AccII CGCG 2 cut(s) 182, 230
AciI CCGC 8 cut(s) 12, 157, 180, 230, 288, 636, 639, 792
AcoI YGGCCR 1 cut(s) 754
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 555
AflII CTTAAG 1 cut(s) 121
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 3 cut(s) 378, 517, 849
AluI AGCT 3 cut(s) 378, 517, 849
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 1 cut(s) 754
ApeKI GCWGC 7 cut(s) 218, 225, 243, 327, 378, 567, 747
Asp700I GAANNNNTTC 1 cut(s) 462
AspLEI GCGC 2 cut(s) 230, 768
AspS9I GGNCC 1 cut(s) 581
AsuHPI GGTGA 1 cut(s) 733
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 581
AxyI CCTNAGG 3 cut(s) 204, 554, 621
BbsI GAAGAC 1 cut(s) 695
BbvI GCAGC 7 cut(s) 205, 230, 237, 314, 365, 579, 734
BccI CCATC 2 cut(s) 106, 409
BceAI ACGGC 3 cut(s) 410, 661, 769
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 173
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 581
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 4 cut(s) 38, 517, 579, 788
BpiI GAAGAC 1 cut(s) 695
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 480, 577, 584
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse21I CCTNAGG 3 cut(s) 204, 554, 621
Bse3DI GCAATG 2 cut(s) 658, 808
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 3 cut(s) 480, 577, 584
BseGI GGATG 3 cut(s) 532, 688, 846
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 2 cut(s) 658, 808
BseMII CTCAG 1 cut(s) 545
BseXI GCAGC 7 cut(s) 205, 230, 237, 314, 365, 579, 734
Bsh1236I CGCG 2 cut(s) 182, 230
BshFI GGCC 1 cut(s) 756
BsiHKCI CYCGRG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 555
BsnI GGCC 1 cut(s) 756
BsoBI CYCGRG 1 cut(s) 171
Bsp143I GATC 3 cut(s) 52, 106, 653
BspACI CCGC 8 cut(s) 12, 157, 180, 230, 288, 636, 639, 792
BspANI GGCC 1 cut(s) 756
BspCNI CTCAG 1 cut(s) 546
BspFNI CGCG 2 cut(s) 182, 230
BspMAI CTGCAG 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 121
BsrDI GCAATG 2 cut(s) 658, 808
BssECI CCNNGG 3 cut(s) 480, 577, 584
BssMI GATC 3 cut(s) 52, 106, 653
BssT1I CCWWGG 2 cut(s) 480, 577
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 371, 707
BstAFI CTTAAG 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 154, 223, 731
BstDEI CTNAG 4 cut(s) 143, 204, 554, 621
BstENI CCTNNNNNAGG 1 cut(s) 553
BstF5I GGATG 3 cut(s) 532, 688, 846
BstFNI CGCG 2 cut(s) 182, 230
BstHHI GCGC 2 cut(s) 230, 768
BstKTI GATC 3 cut(s) 55, 109, 656
BstMBI GATC 3 cut(s) 52, 106, 653
BstMWI GCNNNNNNNGC 5 cut(s) 11, 173, 227, 753, 798
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 2 cut(s) 182, 230
BstV1I GCAGC 7 cut(s) 205, 230, 237, 314, 365, 579, 734
BstV2I GAAGAC 1 cut(s) 695
Bsu36I CCTNAGG 3 cut(s) 204, 554, 621
BsuRI GGCC 1 cut(s) 756
BtsCI GGATG 3 cut(s) 532, 688, 846
BtsI GCAGTG 1 cut(s) 787
BtsIMutI CAGTG 1 cut(s) 787
Cac8I GCNNGC 3 cut(s) 154, 223, 731
CfoI GCGC 2 cut(s) 230, 768
Cfr13I GGNCC 1 cut(s) 581
Csp6I GTAC 1 cut(s) 313
CspCI CAANNNNNGTGG 2 cut(s) 802, 837
CviAII CATG 2 cut(s) 606, 758
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 4 cut(s) 143, 204, 554, 621
DpnI GATC 3 cut(s) 54, 108, 655
DpnII GATC 3 cut(s) 52, 106, 653
EaeI YGGCCR 1 cut(s) 754
Eco130I CCWWGG 2 cut(s) 480, 577
Eco47I GGWCC 1 cut(s) 581
Eco81I CCTNAGG 3 cut(s) 204, 554, 621
Eco88I CYCGRG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 480, 577
ErhI CCWWGG 2 cut(s) 480, 577
FaeI CATG 2 cut(s) 609, 761
FaiI YATR 6 cut(s) 325, 607, 643, 745, 759, 852
FatI CATG 2 cut(s) 605, 757
FauI CCCGC 2 cut(s) 223, 785
FokI GGATG 3 cut(s) 539, 695, 853
FspAI RTGCGCAY 1 cut(s) 767
FspI TGCGCA 1 cut(s) 767
GlaI GCGC 2 cut(s) 229, 767
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 756
HhaI GCGC 2 cut(s) 230, 768
Hin1II CATG 2 cut(s) 609, 761
Hin6I GCGC 2 cut(s) 228, 766
HinP1I GCGC 2 cut(s) 228, 766
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 1 cut(s) 346
HpaI GTTAAC 1 cut(s) 283
HphI GGTGA 1 cut(s) 733
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 6 cut(s) 103, 319, 345, 358, 585, 778
Hpy188III TCNNGA 5 cut(s) 38, 56, 113, 497, 651
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 1 cut(s) 811
HpyCH4III ACNGT 2 cut(s) 371, 707
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 173, 227, 753, 798
HpyF3I CTNAG 4 cut(s) 143, 204, 554, 621
Hsp92II CATG 2 cut(s) 609, 761
HspAI GCGC 2 cut(s) 228, 766
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 52, 106, 653
LmnI GCTCC 2 cut(s) 149, 375
LpnPI CCDG 8 cut(s) 41, 51, 126, 202, 207, 524, 551, 566
Lsp1109I GCAGC 7 cut(s) 205, 230, 237, 314, 365, 579, 734
LweI GCATC 4 cut(s) 38, 517, 579, 788
MaeIII GTNAC 5 cut(s) 191, 427, 592, 608, 665
MalI GATC 3 cut(s) 54, 108, 655
MboI GATC 3 cut(s) 52, 106, 653
MboII GAAGA 9 cut(s) 53, 56, 101, 262, 313, 464, 467, 565, 700
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 5 cut(s) 67, 261, 549, 559, 579
MroXI GAANNNNTTC 1 cut(s) 462
MseI TTAA 3 cut(s) 122, 282, 856
MslI CAYNNNNRTG 1 cut(s) 604
MspCI CTTAAG 1 cut(s) 121
MspR9I CCNGG 1 cut(s) 539
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 2 cut(s) 182, 230
MwoI GCNNNNNNNGC 5 cut(s) 11, 173, 227, 753, 798
NdeII GATC 3 cut(s) 52, 106, 653
NlaIII CATG 2 cut(s) 609, 761
NmuCI GTSAC 4 cut(s) 191, 592, 608, 665
NsbI TGCGCA 1 cut(s) 767
PdmI GAANNNNTTC 1 cut(s) 462
PfeI GAWTC 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspPI GGNCC 1 cut(s) 581
PstI CTGCAG 1 cut(s) 223
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 1 cut(s) 604
SaqAI TTAA 3 cut(s) 122, 282, 856
Sau3AI GATC 3 cut(s) 52, 106, 653
Sau96I GGNCC 1 cut(s) 581
ScaI AGTACT 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 539
SetI ASST 8 cut(s) 122, 191, 210, 380, 519, 551, 627, 851
SfaNI GCATC 4 cut(s) 38, 517, 579, 788
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 121, 649
SmoI CTYRAG 2 cut(s) 121, 649
SsiI CCGC 8 cut(s) 12, 157, 180, 230, 288, 636, 639, 792
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 2 cut(s) 480, 577
TaaI ACNGT 2 cut(s) 371, 707
TatI WGTACW 1 cut(s) 312
TauI GCSGC 5 cut(s) 14, 159, 291, 638, 641
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 122, 282, 856
Tru9I TTAA 3 cut(s) 122, 282, 856
TscAI CASTG 1 cut(s) 794
TseFI GTSAC 4 cut(s) 191, 592, 608, 665
TseI GCWGC 7 cut(s) 218, 225, 243, 327, 378, 567, 747
Tsp45I GTSAC 4 cut(s) 191, 592, 608, 665
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 1 cut(s) 794
Vha464I CTTAAG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 581
XagI CCTNNNNNAGG 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 462
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.