Rmu_co8168770.1_g000001

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8168770.1
OG0000301
Physical Location & Seq
Forward (+)
1 .. 435
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8168770.1_g000001.1.cds

Sequence Viewer

Length: 435 bp
gaagaactattttccgacaagggaaccgaggctacaaatgatcgcgaaacctttgatggtgatcttccaatggatgccaaaagccaagggaaaacctctctgaggagaacaagtagcgtcttccttggttctacttctagggcagtgaacacatcaacatgcgacaaaaactctaaggtttgtagggccgctgcaaacagcccaaaatcacattgctgccacaacaagtgtgtggatgtgaagacggacaaactcaactgcgggaaatgtggggtgaaatgcaagcacgcagagatatgctgcaacggtcatgttgcatgtgcacacaatgtccgacaagaaacactgcgggagctgcgacaaccattgcaaacgaggtggttcttgtgcgtttgggatgtgcagctatgcttaggaattacgaagctagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

8.72

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 3 cut(s) 189, 261, 349
AfiI CCNNNNNNNGG 1 cut(s) 102
AluBI AGCT 3 cut(s) 355, 406, 427
AluI AGCT 3 cut(s) 355, 406, 427
Alw21I GWGCWC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 321
AoxI GGCC 1 cut(s) 186
ApaLI GTGCAC 1 cut(s) 321
ApeKI GCWGC 5 cut(s) 191, 216, 300, 355, 403
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 71, 286
BaeGI GKGCMC 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 112, 248
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 5 cut(s) 178, 203, 287, 342, 415
BccI CCATC 1 cut(s) 50
BfaI CTAG 2 cut(s) 138, 428
BisI GCNGC 6 cut(s) 189, 192, 217, 301, 356, 404
BlsI GCNGC 6 cut(s) 190, 193, 218, 302, 357, 405
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 2 cut(s) 112, 248
Bpu10I CCTNAGC 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 3 cut(s) 27, 85, 124
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 211, 365
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 3 cut(s) 27, 85, 124
BseGI GGATG 3 cut(s) 79, 241, 403
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 2 cut(s) 211, 365
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 5 cut(s) 178, 203, 287, 342, 415
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 102
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 40, 61
Bsp68I TCGCGA 1 cut(s) 45
BspACI CCGC 3 cut(s) 189, 261, 349
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 211, 365
BssECI CCNNGG 3 cut(s) 27, 85, 124
BssMI GATC 2 cut(s) 40, 61
BssT1I CCWWGG 2 cut(s) 85, 124
Bst4CI ACNGT 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 284, 288
BstDEI CTNAG 3 cut(s) 101, 174, 412
BstENI CCTNNNNNAGG 1 cut(s) 100
BstF5I GGATG 3 cut(s) 79, 241, 403
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 2 cut(s) 43, 64
BstMBI GATC 2 cut(s) 40, 61
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstNSI RCATGY 2 cut(s) 162, 321
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 5 cut(s) 178, 203, 287, 342, 415
BstV2I GAAGAC 2 cut(s) 112, 248
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 79, 241, 403
BtsI GCAGTG 2 cut(s) 150, 344
BtsIMutI CAGTG 2 cut(s) 150, 344
BtuMI TCGCGA 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 284, 288
Cfr13I GGNCC 1 cut(s) 186
CseI GACGC 1 cut(s) 106
CspCI CAANNNNNGTGG 2 cut(s) 359, 394
CviAII CATG 3 cut(s) 159, 311, 318
CviJI RGCY 7 cut(s) 32, 84, 188, 201, 355, 406, 427
CviKI_1 RGCY 7 cut(s) 32, 84, 188, 201, 355, 406, 427
DdeI CTNAG 3 cut(s) 101, 174, 412
DpnI GATC 2 cut(s) 42, 63
DpnII GATC 2 cut(s) 40, 61
Eco130I CCWWGG 2 cut(s) 85, 124
EcoNI CCTNNNNNAGG 1 cut(s) 100
EcoT14I CCWWGG 2 cut(s) 85, 124
ErhI CCWWGG 2 cut(s) 85, 124
FaeI CATG 3 cut(s) 162, 314, 321
FaiI YATR 5 cut(s) 160, 298, 312, 319, 409
FatI CATG 3 cut(s) 158, 310, 317
FauI CCCGC 2 cut(s) 254, 342
Fnu4HI GCNGC 6 cut(s) 189, 192, 217, 301, 356, 404
FokI GGATG 3 cut(s) 86, 248, 410
Fsp4HI GCNGC 6 cut(s) 189, 192, 217, 301, 356, 404
FspBI CTAG 2 cut(s) 138, 428
GluI GCNGC 6 cut(s) 189, 192, 217, 301, 356, 404
HaeIII GGCC 1 cut(s) 188
HgaI GACGC 1 cut(s) 106
Hin1II CATG 3 cut(s) 162, 314, 321
HphI GGTGA 2 cut(s) 71, 286
Hpy166II GTNNAC 2 cut(s) 148, 323
Hpy188I TCNGA 3 cut(s) 16, 102, 335
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 148, 323
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 7 cut(s) 194, 282, 303, 317, 323, 370, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
HpyF3I CTNAG 3 cut(s) 101, 174, 412
Hsp92II CATG 3 cut(s) 162, 314, 321
Kzo9I GATC 2 cut(s) 40, 61
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 5 cut(s) 178, 203, 287, 342, 415
LweI GCATC 1 cut(s) 64
MaeI CTAG 2 cut(s) 138, 428
MalI GATC 2 cut(s) 42, 63
MboI GATC 2 cut(s) 40, 61
MboII GAAGA 4 cut(s) 14, 56, 112, 253
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 1 cut(s) 417
MmeI TCCRAC 2 cut(s) 39, 358
MnlI CCTC 4 cut(s) 22, 96, 106, 369
MslI CAYNNNNRTG 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 191
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 355
NdeII GATC 2 cut(s) 40, 61
NlaIII CATG 3 cut(s) 162, 314, 321
NlaIV GGNNCC 1 cut(s) 25
NruI TCGCGA 1 cut(s) 45
NspI RCATGY 2 cut(s) 162, 321
PkrI GCNGC 6 cut(s) 190, 193, 218, 302, 357, 405
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 186
PsrI GAACNNNNNNTAC 2 cut(s) 16, 48
RruI TCGCGA 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 157
SatI GCNGC 6 cut(s) 189, 192, 217, 301, 356, 404
Sau3AI GATC 2 cut(s) 40, 61
Sau96I GGNCC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 325
SetI ASST 7 cut(s) 53, 98, 180, 357, 380, 408, 429
SfaNI GCATC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 1 cut(s) 417
SsiI CCGC 3 cut(s) 189, 261, 349
SspMI CTAG 2 cut(s) 138, 428
StyI CCWWGG 2 cut(s) 85, 124
TaaI ACNGT 1 cut(s) 308
TasI AATT 1 cut(s) 417
TauI GCSGC 1 cut(s) 191
TscAI CASTG 2 cut(s) 150, 351
TseI GCWGC 5 cut(s) 191, 216, 300, 355, 403
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 150, 351
VneI GTGCAC 1 cut(s) 321
XagI CCTNNNNNAGG 1 cut(s) 100
XceI RCATGY 2 cut(s) 162, 321
XspI CTAG 2 cut(s) 138, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.