Rorug05G0220100

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000301
Physical Location & Seq
Reverse (-)
22677793 .. 22682013
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0220100.1

Sequence Viewer

Length: 1173 bp
ATGCCGTTGTTTCACCTGAGATTGTCTGCTCCATATTCAACCCTTGATCATGTTCCGCTGTTTGGTTATGTGGCGGAAGCCAATCACTTTCCACAGAACATGGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGTCTCCCTCGTTTGCCTCTATCTGTTCTTTCCCTCAACTTCATTACATTGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCTAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAACGTAAGAAAGGAGGTTCAGTTAATTGGTCAGAATGACTCTACAGTAAGTATTAGCAACGAAGATTACAAGGAAAGAGAAAGACGAAAGAAAATAGGACTAGCCAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACATAGTGCAGAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGTCCTCGTTCTCATAGTGTGGAGTCCAAGGCAAAAATGAGTTCTTCACTTAGACGGCTTTGGGGAAGGCGTCTAAAATGGAAACGGTCAAGGGAGAAACTCTTCCTGTCATGGGTAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAGGAGTTAAATTGGGATAGCTATGAGAATATAAAGGAAGAATTATATCTCCAACAGCTTGAGCAGGCTGCAGAAAAGAAAAAGGCAAGGGAACGGGCAAAGATGGGAGCCAAGGAAGCAGCAGCACGAGCTAAAGTTAAAAAGAAGGCAAGGCGTGCTGTTGAAAGGAGAGTAGATAGTGAGACTAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGCTTGACAGAGAGACTTCCACAAATGATCAAGTTGCTAGTCGAAGGGACATAGTTAAATCGCAATTGCATATCTCAGCTTTGGAGAAATTGGATGCAGAGCTTATAAAGAGAGAAAAATTGCGAGCAGAAGTTTCATTTGCAGACCAGATAAGAGCTGCCAAAAACAGAAAAATGGAACAAGCTTTGGCAGCCCCATCTGTTGGGGTAGTAAACAAGAAACCAGGGATGCATACCCATACACTTCTGCAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

390

Amino Acids

44.87

Weight (kDa)

10.11

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 121 - 149 1.2e-06 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 1115
AciI CCGC 3 cut(s) 56, 74, 641
AcyI GRCGYC 1 cut(s) 577
AfiI CCNNNNNNNGG 3 cut(s) 62, 619, 1115
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 3 cut(s) 39, 112, 830
AjnI CCWGG 1 cut(s) 1135
AluBI AGCT 9 cut(s) 194, 687, 724, 797, 916, 992, 1015, 1070, 1097
AluI AGCT 9 cut(s) 194, 687, 724, 797, 916, 992, 1015, 1070, 1097
Alw26I GTCTC 4 cut(s) 147, 428, 842, 920
AoxI GGCC 1 cut(s) 468
ApeKI GCWGC 6 cut(s) 277, 734, 785, 788, 1070, 1103
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 5
BauI CACGAG 2 cut(s) 270, 792
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 6 cut(s) 289, 721, 797, 800, 1057, 1115
BccI CCATC 2 cut(s) 763, 1117
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 1137
BclI TGATCA 2 cut(s) 46, 940
BcoDI GTCTC 4 cut(s) 147, 428, 842, 920
BfaI CTAG 2 cut(s) 383, 951
BfmI CTRYAG 4 cut(s) 252, 324, 735, 1160
BisI GCNGC 7 cut(s) 278, 642, 735, 786, 789, 1071, 1104
BlsI GCNGC 7 cut(s) 279, 643, 736, 787, 790, 1072, 1105
Bme1390I CCNGG 1 cut(s) 1137
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 775
BmrFI CCNGG 1 cut(s) 1137
BmsI GCATC 3 cut(s) 456, 997, 1131
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 746
BsaAI YACGTR 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 5 cut(s) 404, 483, 534, 777, 1136
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 619, 1115
BseBI CCWGG 1 cut(s) 1137
BseDI CCNNGG 5 cut(s) 404, 483, 534, 777, 1136
BseGI GGATG 3 cut(s) 223, 1012, 1146
BseLI CCNNNNNNNGG 3 cut(s) 62, 619, 1115
BseMII CTCAG 4 cut(s) 8, 122, 256, 1002
BseXI GCAGC 6 cut(s) 289, 721, 797, 800, 1057, 1115
BseYI CCCAGC 1 cut(s) 504
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 1 cut(s) 470
BslFI GGGAC 2 cut(s) 487, 974
BslI CCNNNNNNNGG 3 cut(s) 62, 619, 1115
BsmAI GTCTC 4 cut(s) 147, 428, 842, 920
BsmFI GGGAC 2 cut(s) 487, 974
BsnI GGCC 1 cut(s) 470
Bso31I GGTCTC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 46, 201, 905, 940
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 3 cut(s) 56, 74, 641
BspANI GGCC 1 cut(s) 470
BspCNI CTCAG 4 cut(s) 9, 123, 255, 1001
BspLI GGNNCC 1 cut(s) 775
BspMAI CTGCAG 2 cut(s) 739, 1164
BspTNI GGTCTC 1 cut(s) 147
BssECI CCNNGG 5 cut(s) 404, 483, 534, 777, 1136
BssMI GATC 4 cut(s) 46, 201, 905, 940
BssNI GRCGYC 1 cut(s) 577
BssSI CACGAG 2 cut(s) 270, 792
BssT1I CCWWGG 4 cut(s) 404, 483, 534, 777
Bst2BI CACGAG 2 cut(s) 270, 792
Bst2UI CCWGG 1 cut(s) 1137
Bst4CI ACNGT 2 cut(s) 328, 594
Bst6I CTCTTC 2 cut(s) 614, 861
BstACI GRCGYC 1 cut(s) 577
BstAPI GCANNNNNTGC 1 cut(s) 821
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 732, 822, 1038
BstDEI CTNAG 7 cut(s) 17, 131, 242, 557, 645, 988, 1167
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 3 cut(s) 223, 1012, 1146
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 4 cut(s) 49, 204, 908, 943
BstMAI GTCTC 4 cut(s) 147, 428, 842, 920
BstMBI GATC 4 cut(s) 46, 201, 905, 940
BstMWI GCNNNNNNNGC 7 cut(s) 274, 451, 641, 782, 794, 821, 1103
BstNI CCWGG 1 cut(s) 1137
BstSCI CCNGG 1 cut(s) 1135
BstSFI CTRYAG 4 cut(s) 252, 324, 735, 1160
BstV1I GCAGC 6 cut(s) 289, 721, 797, 800, 1057, 1115
BsuRI GGCC 1 cut(s) 470
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 3 cut(s) 223, 1012, 1146
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 732, 822, 1038
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 2 cut(s) 497, 566
CviAII CATG 5 cut(s) 50, 100, 214, 405, 618
DdeI CTNAG 7 cut(s) 17, 131, 242, 557, 645, 988, 1167
DpnI GATC 4 cut(s) 48, 203, 907, 942
DpnII GATC 4 cut(s) 46, 201, 905, 940
Eam1104I CTCTTC 2 cut(s) 614, 861
EarI CTCTTC 2 cut(s) 614, 861
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 4 cut(s) 404, 483, 534, 777
Eco31I GGTCTC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 1135
EcoT14I CCWWGG 4 cut(s) 404, 483, 534, 777
EcoT22I ATGCAT 1 cut(s) 1146
ErhI CCWWGG 4 cut(s) 404, 483, 534, 777
FaeI CATG 5 cut(s) 53, 103, 217, 408, 621
FaqI GGGAC 2 cut(s) 487, 974
FatI CATG 5 cut(s) 49, 99, 213, 404, 617
FbaI TGATCA 2 cut(s) 46, 940
Fnu4HI GCNGC 7 cut(s) 278, 642, 735, 786, 789, 1071, 1104
FokI GGATG 3 cut(s) 230, 1019, 1153
Fsp4HI GCNGC 7 cut(s) 278, 642, 735, 786, 789, 1071, 1104
FspBI CTAG 2 cut(s) 383, 951
GlaI GCGC 1 cut(s) 446
GluI GCNGC 7 cut(s) 278, 642, 735, 786, 789, 1071, 1104
GsaI CCCAGC 1 cut(s) 508
HaeIII GGCC 1 cut(s) 470
HgaI GACGC 2 cut(s) 497, 566
HhaI GCGC 1 cut(s) 447
Hin1I GRCGYC 1 cut(s) 577
Hin1II CATG 5 cut(s) 53, 103, 217, 408, 621
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 1 cut(s) 873
HindII GTYRAC 1 cut(s) 873
HindIII AAGCTT 2 cut(s) 914, 1095
HinfI GANTC 3 cut(s) 136, 320, 530
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 3 cut(s) 662, 873, 1126
Hpy188I TCNGA 3 cut(s) 132, 315, 882
Hpy8I GTNNAC 3 cut(s) 662, 873, 1126
HpyAV CCTTC 3 cut(s) 567, 805, 951
HpyCH4III ACNGT 2 cut(s) 328, 594
HpyCH4IV ACGT 2 cut(s) 124, 285
HpyCH4V TGCA 8 cut(s) 199, 431, 737, 982, 1010, 1055, 1144, 1162
HpyF10VI GCNNNNNNNGC 7 cut(s) 274, 451, 641, 782, 794, 821, 1103
HpyF3I CTNAG 7 cut(s) 17, 131, 242, 557, 645, 988, 1167
HpySE526I ACGT 2 cut(s) 124, 285
Hsp92I GRCGYC 1 cut(s) 577
Hsp92II CATG 5 cut(s) 53, 103, 217, 408, 621
HspAI GCGC 1 cut(s) 445
Ksp22I TGATCA 2 cut(s) 46, 940
Kzo9I GATC 4 cut(s) 46, 201, 905, 940
LmnI GCTCC 4 cut(s) 34, 103, 191, 773
Lsp1109I GCAGC 6 cut(s) 289, 721, 797, 800, 1057, 1115
LweI GCATC 3 cut(s) 456, 997, 1131
MaeI CTAG 2 cut(s) 383, 951
MaeII ACGT 2 cut(s) 124, 285
MalI GATC 4 cut(s) 48, 203, 907, 942
MboI GATC 4 cut(s) 46, 201, 905, 940
MboII GAAGA 6 cut(s) 356, 508, 543, 601, 716, 878
MfeI CAATTG 1 cut(s) 977
MluCI AATT 7 cut(s) 112, 306, 676, 707, 977, 1001, 1031
MlyI GAGTC 2 cut(s) 314, 539
MmeI TCCRAC 1 cut(s) 742
MnlI CCTC 9 cut(s) 126, 157, 166, 183, 251, 289, 460, 522, 631
Mph1103I ATGCAT 1 cut(s) 1146
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 5 cut(s) 305, 674, 804, 897, 969
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 1137
MunI CAATTG 1 cut(s) 977
MvaI CCWGG 1 cut(s) 1137
MwoI GCNNNNNNNGC 7 cut(s) 274, 451, 641, 782, 794, 821, 1103
NcoI CCATGG 1 cut(s) 404
NdeII GATC 4 cut(s) 46, 201, 905, 940
NlaIII CATG 5 cut(s) 53, 103, 217, 408, 621
NlaIV GGNNCC 1 cut(s) 775
NsiI ATGCAT 1 cut(s) 1146
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 1115
PkrI GCNGC 7 cut(s) 279, 643, 736, 787, 790, 1072, 1105
PleI GAGTC 2 cut(s) 314, 538
PpsI GAGTC 2 cut(s) 314, 538
Ppu21I YACGTR 1 cut(s) 125
PsiI TTATAA 1 cut(s) 1019
Psp6I CCWGG 1 cut(s) 1135
PspFI CCCAGC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 1135
PspN4I GGNNCC 1 cut(s) 775
PspPI GGNCC 1 cut(s) 469
PstI CTGCAG 2 cut(s) 739, 1164
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 5 cut(s) 305, 674, 804, 897, 969
SatI GCNGC 7 cut(s) 278, 642, 735, 786, 789, 1071, 1104
Sau3AI GATC 4 cut(s) 46, 201, 905, 940
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 2 cut(s) 314, 539
ScrFI CCNGG 1 cut(s) 1137
SfaNI GCATC 3 cut(s) 456, 997, 1131
SfcI CTRYAG 4 cut(s) 252, 324, 735, 1160
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 7 cut(s) 112, 306, 676, 707, 977, 1001, 1031
SsiI CCGC 3 cut(s) 56, 74, 641
SspMI CTAG 2 cut(s) 383, 951
StyD4I CCNGG 1 cut(s) 1135
StyI CCWWGG 4 cut(s) 404, 483, 534, 777
TaaI ACNGT 2 cut(s) 328, 594
TaiI ACGT 2 cut(s) 127, 288
TaqI TCGA 1 cut(s) 955
TaqII GACCGA 1 cut(s) 129
TasI AATT 7 cut(s) 112, 306, 676, 707, 977, 1001, 1031
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 5 cut(s) 305, 674, 804, 897, 969
Tru9I TTAA 5 cut(s) 305, 674, 804, 897, 969
TscAI CASTG 1 cut(s) 211
TseI GCWGC 6 cut(s) 277, 734, 785, 788, 1070, 1103
TspDTI ATGAA 3 cut(s) 170, 879, 1038
TspRI CASTG 1 cut(s) 211
Van91I CCANNNNNTGG 1 cut(s) 1115
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 2 cut(s) 383, 951
Zsp2I ATGCAT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.