RLG00000006956

stigma-specific Stig1 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000301
Physical Location & Seq
Forward (+)
12151201 .. 12151650
450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006956

Sequence Viewer

Length: 450 bp
ATGTTGATGGCTTTAGCCGTTACTCTCTCTGCAACACTAGTCGAAGAAGAACTATTTTCCAACAAGGAAACCAAGGCTGCAAATGATCACGAAACCTTTGATGGTGATCTTCCATTGGATGCCAAAAGCCAAGGGAAAACCTCTTTGAGGGGAACAAGCAGCGTCTTCCTTGGTTCTAGGGAAGTGACGACATCATCATGCGACAAAAACCCTAAGGTTTGTAGAGCCGCCGCAAACAGCCCAAAATCACATTGCTGCCACAACAAGTGTGTGGACGTGAAGACGGACAGACTCAACTGCGGGAAATGTGGGGTGAAATGCAAGCACGCAGAGATATGCTGCAACGGTCATGTTGTGCACACAATGTCCGACAAGAAACACTGCGGGAGCTGCGACAACCATTGCAAGAGAGGTGGTTCTTGTGCGTTTGGGATGTGCAGCTATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Stig1

Protein Analysis

150

Amino Acids

15.95

Weight (kDa)

8.35

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stig1 PF04885 65 - 149 1.1e-25 Stigma-specific STIG1-like protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000301)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11925
fragaria_vesca FvH4_2g01120 FvH4_3g01640 FvH4_3g01660 FvH4_3g01670 FvH4_3g01672 FvH4_3g18030
malus_domestica MD05G1350300.v1.1 MD05G1350400.v1.1 MD05G1350500.v1.1 MD07G1060200.v1.1 MD07G1060300.v1.1 MD10G1325000.v1.1 MD10G1325100.v1.1 MD10G1325200.v1.1 MD10G1325300.v1.1 MD11G1212900.v1.1
prunus_persica Prupe.4G016900_v2.0.a1 Prupe.4G017000_v2.0.a1 Prupe.4G017100_v2.0.a1 Prupe.4G017200_v2.0.a1 Prupe.4G020300_v2.0.a1 Prupe.4G218500_v2.0.a1 Prupe.4G218600_v2.0.a1
pyrus_communis pycom05g31780 pycom05g31790
rosa_chinensis RchiOBHm_Chr4g0430681 RchiOBHm_Chr4g0430691 RchiOBHm_Chr5g0002431 RchiOBHm_Chr5g0002441 RchiOBHm_Chr5g0002451 RchiOBHm_Chr5g0002461 RchiOBHm_Chr5g0002511 RchiOBHm_Chr5g0002521 RchiOBHm_Chr5g0030071 RchiOBHm_Chr5g0040841
rosa_laevigata RLG00000006955 RLG00000006956 RLG00000031032 RLG00000031033 RLG00000031035 RLG00000031036
rosa_multiflora Rmu_co8168770.1_g000001 Rmu_co8419035.1_g000001 Rmu_co8421345.1_g000001 Rmu_sc0000131.1_g000010 Rmu_sc0000131.1_g000011 Rmu_sc0000140.1_g000002 Rmu_sc0001717.1_g000006 Rmu_sc0001717.1_g000007 Rmu_sc0001717.1_g000008 Rmu_sc0001717.1_g000012 Rmu_sc0003568.1_g000001 Rmu_sc0013444.1_g000002 Rmu_sc0039536.1_g000001
rosa_roxburghii Rroxscaffold_1G00039860 Rroxscaffold_1G00049920 Rroxscaffold_1G00049960 Rroxscaffold_1G00073380 Rroxscaffold_1G00073390 Rroxscaffold_1G00073410 Rroxscaffold_1G00073420 Rroxscaffold_5G00372420 Rroxscaffold_5G00372430
rosa_rugosa Rorug04G0245100 Rorug04G0245200 Rorug04G0396600 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug04G0396700 Rorug05G0116800 Rorug05G0188100 Rorug05G0220100
rosa_samantha Rh4BG308400 Rh4BG308500 Rh4BG308800 Rh4BG308900 Rh4BG309100 Rh4BG309200 Rh4CG325600 Rh4CG325700 Rh4DG306000 Rh4DG306100 Rh5AG019100 Rh5AG019200 Rh5AG019300 Rh5AG019600 Rh5AG019700 Rh5AG020000 Rh5BG022000 Rh5BG022100 Rh5BG022300 Rh5BG022400 Rh5BG022700 Rh5CG021000 Rh5CG021100 Rh5CG021200 Rh5CG021500 Rh5CG021600 Rh5CG022000 Rh5CG232500 Rh5CG310700 Rh5DG020100 Rh5DG020300 Rh5DG020400 Rh5DG020600 Rh5DG020800 Rh5DG021100 Rh5DG213100 Rh5DG286900
rosa_wichuraiana Rw4G026160 Rw4G026170 Rw5G001790 Rw5G001800 Rw5G001810 Rw5G001820 Rw5G001840 Rw5G019110 Rw5G025720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 228, 231, 300, 384
AfiI CCNNNNNNNGG 1 cut(s) 147
AhlI ACTAGT 1 cut(s) 37
AjiI CACGTC 1 cut(s) 277
AluBI AGCT 2 cut(s) 390, 441
AluI AGCT 2 cut(s) 390, 441
Alw21I GWGCWC 1 cut(s) 360
Alw44I GTGCAC 1 cut(s) 356
ApaLI GTGCAC 1 cut(s) 356
ApeKI GCWGC 6 cut(s) 77, 159, 255, 339, 390, 438
AsuHPI GGTGA 2 cut(s) 116, 325
AxyI CCTNAGG 1 cut(s) 213
BaeGI GKGCMC 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 157, 287
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 5 cut(s) 64, 171, 242, 326, 377
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 2
BclI TGATCA 1 cut(s) 85
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 177
BisI GCNGC 8 cut(s) 78, 160, 228, 231, 256, 340, 391, 439
BlsI GCNGC 8 cut(s) 79, 161, 229, 232, 257, 341, 392, 440
BmgBI CACGTC 1 cut(s) 277
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 2 cut(s) 157, 287
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 72, 130, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 2 cut(s) 250, 400
Bse8I GATNNNNATC 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 72, 130, 169
BseGI GGATG 2 cut(s) 124, 438
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 2 cut(s) 250, 400
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 5 cut(s) 64, 171, 242, 326, 377
BsiHKAI GWGCWC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 85, 106
BspACI CCGC 4 cut(s) 228, 231, 300, 384
BsrDI GCAATG 2 cut(s) 250, 400
BssECI CCNNGG 3 cut(s) 72, 130, 169
BssMI GATC 2 cut(s) 85, 106
BssT1I CCWWGG 3 cut(s) 72, 130, 169
Bst4CI ACNGT 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 323, 327
BstDEI CTNAG 2 cut(s) 213, 447
BstENI CCTNNNNNAGG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 124, 438
BstKTI GATC 2 cut(s) 88, 109
BstMBI GATC 2 cut(s) 85, 106
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstSLI GKGCMC 1 cut(s) 360
BstV1I GCAGC 5 cut(s) 64, 171, 242, 326, 377
BstV2I GAAGAC 2 cut(s) 157, 287
Bsu36I CCTNAGG 1 cut(s) 213
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 2 cut(s) 124, 438
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 323, 327
CseI GACGC 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 198, 350
CviJI RGCY 8 cut(s) 11, 17, 77, 129, 227, 240, 390, 441
CviKI_1 RGCY 8 cut(s) 11, 17, 77, 129, 227, 240, 390, 441
DdeI CTNAG 2 cut(s) 213, 447
DpnI GATC 2 cut(s) 87, 108
DpnII GATC 2 cut(s) 85, 106
Eco130I CCWWGG 3 cut(s) 72, 130, 169
Eco81I CCTNAGG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoT14I CCWWGG 3 cut(s) 72, 130, 169
ErhI CCWWGG 3 cut(s) 72, 130, 169
FaeI CATG 2 cut(s) 201, 353
FaiI YATR 4 cut(s) 199, 337, 351, 444
FatI CATG 2 cut(s) 197, 349
FauI CCCGC 2 cut(s) 293, 377
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 8 cut(s) 78, 160, 228, 231, 256, 340, 391, 439
FokI GGATG 2 cut(s) 131, 445
Fsp4HI GCNGC 8 cut(s) 78, 160, 228, 231, 256, 340, 391, 439
FspBI CTAG 2 cut(s) 38, 177
GluI GCNGC 8 cut(s) 78, 160, 228, 231, 256, 340, 391, 439
HgaI GACGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 201, 353
HinfI GANTC 1 cut(s) 291
HphI GGTGA 2 cut(s) 116, 325
Hpy166II GTNNAC 2 cut(s) 274, 358
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 274, 358
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 7 cut(s) 32, 80, 321, 342, 358, 405, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 2 cut(s) 213, 447
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 2 cut(s) 201, 353
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 2 cut(s) 85, 106
LmnI GCTCC 1 cut(s) 387
Lsp1109I GCAGC 5 cut(s) 64, 171, 242, 326, 377
LweI GCATC 1 cut(s) 109
MaeI CTAG 2 cut(s) 38, 177
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 19, 184
MalI GATC 2 cut(s) 87, 108
MboI GATC 2 cut(s) 85, 106
MboII GAAGA 5 cut(s) 56, 59, 101, 157, 292
MhlI GDGCHC 1 cut(s) 360
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 2 cut(s) 84, 393
MnlI CCTC 3 cut(s) 141, 151, 404
MslI CAYNNNNRTG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 390
NdeII GATC 2 cut(s) 85, 106
NlaIII CATG 2 cut(s) 201, 353
NmuCI GTSAC 1 cut(s) 184
PkrI GCNGC 8 cut(s) 79, 161, 229, 232, 257, 341, 392, 440
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 196
SatI GCNGC 8 cut(s) 78, 160, 228, 231, 256, 340, 391, 439
Sau3AI GATC 2 cut(s) 85, 106
SchI GAGTC 1 cut(s) 285
SduI GDGCHC 1 cut(s) 360
SetI ASST 7 cut(s) 98, 143, 219, 279, 392, 415, 443
SfaNI GCATC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 37
SsiI CCGC 4 cut(s) 228, 231, 300, 384
SspMI CTAG 2 cut(s) 38, 177
StyI CCWWGG 3 cut(s) 72, 130, 169
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 279
TaqI TCGA 1 cut(s) 42
TauI GCSGC 2 cut(s) 230, 233
TscAI CASTG 1 cut(s) 386
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 6 cut(s) 77, 159, 255, 339, 390, 438
Tsp45I GTSAC 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 386
VneI GTGCAC 1 cut(s) 356
XagI CCTNNNNNAGG 1 cut(s) 145
XspI CTAG 2 cut(s) 38, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.